Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02782 and MPMX19_02783 are separated by 103 nucleotides MPMX19_02783 and MPMX19_02784 are separated by 12 nucleotides MPMX19_02784 and MPMX19_02785 overlap by 4 nucleotides
MPMX19_02782: MPMX19_02782 - 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase LinX, at 15,585 to 16,349
_02782
MPMX19_02783: MPMX19_02783 - HTH-type transcriptional regulator DmlR, at 16,453 to 17,391
_02783
MPMX19_02784: MPMX19_02784 - phosphoglycerate mutase GpmB, at 17,404 to 18,117
_02784
MPMX19_02785: MPMX19_02785 - hypothetical protein, at 18,114 to 18,497
_02785
Position (kb)
16
17
18 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 15.472 kb on + strand at 15.472 kb on + strand at 15.494 kb on + strand at 15.495 kb on - strand at 15.724 kb on + strand, within MPMX19_02782 at 15.724 kb on + strand, within MPMX19_02782 at 15.724 kb on + strand, within MPMX19_02782 at 15.724 kb on + strand, within MPMX19_02782 at 15.724 kb on + strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.725 kb on - strand, within MPMX19_02782 at 15.889 kb on + strand, within MPMX19_02782 at 15.890 kb on - strand, within MPMX19_02782 at 15.890 kb on - strand, within MPMX19_02782 at 15.890 kb on - strand, within MPMX19_02782 at 15.890 kb on - strand, within MPMX19_02782 at 15.890 kb on - strand, within MPMX19_02782 at 16.027 kb on + strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.028 kb on - strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.084 kb on + strand, within MPMX19_02782 at 16.085 kb on - strand, within MPMX19_02782 at 16.085 kb on - strand, within MPMX19_02782 at 16.085 kb on - strand, within MPMX19_02782 at 16.085 kb on - strand, within MPMX19_02782 at 16.085 kb on - strand, within MPMX19_02782 at 16.126 kb on + strand, within MPMX19_02782 at 16.126 kb on + strand, within MPMX19_02782 at 16.127 kb on - strand, within MPMX19_02782 at 16.127 kb on - strand, within MPMX19_02782 at 16.246 kb on + strand, within MPMX19_02782 at 16.246 kb on + strand, within MPMX19_02782 at 16.246 kb on + strand, within MPMX19_02782 at 16.246 kb on + strand, within MPMX19_02782 at 16.246 kb on + strand, within MPMX19_02782 at 16.247 kb on - strand, within MPMX19_02782 at 16.392 kb on + strand at 16.392 kb on + strand at 16.392 kb on + strand at 16.393 kb on - strand at 16.393 kb on - strand at 16.393 kb on - strand at 16.418 kb on - strand at 16.678 kb on + strand, within MPMX19_02783 at 16.678 kb on + strand, within MPMX19_02783 at 16.678 kb on + strand, within MPMX19_02783 at 16.678 kb on + strand, within MPMX19_02783 at 16.678 kb on + strand, within MPMX19_02783 at 16.678 kb on + strand, within MPMX19_02783 at 16.679 kb on - strand, within MPMX19_02783 at 16.679 kb on - strand, within MPMX19_02783 at 16.972 kb on + strand, within MPMX19_02783 at 16.972 kb on + strand, within MPMX19_02783 at 16.972 kb on + strand, within MPMX19_02783 at 16.972 kb on + strand, within MPMX19_02783 at 16.972 kb on + strand, within MPMX19_02783 at 16.973 kb on - strand, within MPMX19_02783 at 16.973 kb on - strand, within MPMX19_02783 at 16.973 kb on - strand, within MPMX19_02783 at 16.973 kb on - strand, within MPMX19_02783 at 16.973 kb on - strand, within MPMX19_02783 at 17.035 kb on + strand, within MPMX19_02783 at 17.035 kb on + strand, within MPMX19_02783 at 17.035 kb on + strand, within MPMX19_02783 at 17.035 kb on + strand, within MPMX19_02783 at 17.035 kb on + strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.036 kb on - strand, within MPMX19_02783 at 17.041 kb on + strand, within MPMX19_02783 at 17.042 kb on - strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.274 kb on - strand, within MPMX19_02783 at 17.274 kb on - strand, within MPMX19_02783 at 17.312 kb on + strand at 17.312 kb on + strand at 17.385 kb on + strand at 17.389 kb on + strand at 17.389 kb on + strand at 17.390 kb on - strand at 17.390 kb on - strand at 17.390 kb on - strand at 17.390 kb on - strand at 17.561 kb on + strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.068 kb on + strand at 18.069 kb on - strand at 18.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 15,472 + +0.5 15,472 + -1.6 15,494 + +1.1 15,495 - +0.3 15,724 + MPMX19_02782 0.18 -0.2 15,724 + MPMX19_02782 0.18 +0.6 15,724 + MPMX19_02782 0.18 -0.2 15,724 + MPMX19_02782 0.18 -0.4 15,724 + MPMX19_02782 0.18 -0.1 15,725 - MPMX19_02782 0.18 -0.7 15,725 - MPMX19_02782 0.18 +0.6 15,725 - MPMX19_02782 0.18 -0.4 15,725 - MPMX19_02782 0.18 -0.7 15,725 - MPMX19_02782 0.18 +0.5 15,725 - MPMX19_02782 0.18 -0.1 15,889 + MPMX19_02782 0.40 -3.6 15,890 - MPMX19_02782 0.40 +0.5 15,890 - MPMX19_02782 0.40 +0.5 15,890 - MPMX19_02782 0.40 +0.8 15,890 - MPMX19_02782 0.40 +0.1 15,890 - MPMX19_02782 0.40 -0.9 16,027 + MPMX19_02782 0.58 -0.4 16,028 - MPMX19_02782 0.58 -0.5 16,028 - MPMX19_02782 0.58 +0.1 16,028 - MPMX19_02782 0.58 -0.3 16,028 - MPMX19_02782 0.58 -0.4 16,028 - MPMX19_02782 0.58 -0.1 16,028 - MPMX19_02782 0.58 -1.1 16,028 - MPMX19_02782 0.58 -1.3 16,084 + MPMX19_02782 0.65 -1.9 16,084 + MPMX19_02782 0.65 -0.0 16,084 + MPMX19_02782 0.65 +0.7 16,084 + MPMX19_02782 0.65 -3.0 16,084 + MPMX19_02782 0.65 -1.2 16,084 + MPMX19_02782 0.65 +0.0 16,084 + MPMX19_02782 0.65 +0.7 16,084 + MPMX19_02782 0.65 -0.1 16,084 + MPMX19_02782 0.65 -0.6 16,085 - MPMX19_02782 0.65 +0.0 16,085 - MPMX19_02782 0.65 +0.2 16,085 - MPMX19_02782 0.65 -2.2 16,085 - MPMX19_02782 0.65 -0.0 16,085 - MPMX19_02782 0.65 -0.4 16,126 + MPMX19_02782 0.71 -0.9 16,126 + MPMX19_02782 0.71 +0.8 16,127 - MPMX19_02782 0.71 -0.2 16,127 - MPMX19_02782 0.71 -2.0 16,246 + MPMX19_02782 0.86 -0.9 16,246 + MPMX19_02782 0.86 -0.3 16,246 + MPMX19_02782 0.86 -0.6 16,246 + MPMX19_02782 0.86 -1.0 16,246 + MPMX19_02782 0.86 -0.6 16,247 - MPMX19_02782 0.87 -0.3 16,392 + +1.6 16,392 + -1.4 16,392 + +1.6 16,393 - +0.4 16,393 - +0.0 16,393 - +0.3 16,418 - +1.0 16,678 + MPMX19_02783 0.24 -0.0 16,678 + MPMX19_02783 0.24 -0.3 16,678 + MPMX19_02783 0.24 -0.4 16,678 + MPMX19_02783 0.24 -0.6 16,678 + MPMX19_02783 0.24 +0.7 16,678 + MPMX19_02783 0.24 -1.3 16,679 - MPMX19_02783 0.24 +0.4 16,679 - MPMX19_02783 0.24 +2.6 16,972 + MPMX19_02783 0.55 +0.8 16,972 + MPMX19_02783 0.55 +0.1 16,972 + MPMX19_02783 0.55 -0.5 16,972 + MPMX19_02783 0.55 +0.9 16,972 + MPMX19_02783 0.55 +0.7 16,973 - MPMX19_02783 0.55 -0.7 16,973 - MPMX19_02783 0.55 +0.2 16,973 - MPMX19_02783 0.55 +0.0 16,973 - MPMX19_02783 0.55 +0.0 16,973 - MPMX19_02783 0.55 -0.6 17,035 + MPMX19_02783 0.62 -0.2 17,035 + MPMX19_02783 0.62 +0.3 17,035 + MPMX19_02783 0.62 +2.0 17,035 + MPMX19_02783 0.62 -0.7 17,035 + MPMX19_02783 0.62 -2.1 17,036 - MPMX19_02783 0.62 -0.1 17,036 - MPMX19_02783 0.62 +1.0 17,036 - MPMX19_02783 0.62 +0.0 17,036 - MPMX19_02783 0.62 -0.4 17,036 - MPMX19_02783 0.62 -1.7 17,036 - MPMX19_02783 0.62 +0.6 17,041 + MPMX19_02783 0.63 -0.5 17,042 - MPMX19_02783 0.63 -0.9 17,266 + MPMX19_02783 0.87 -0.7 17,266 + MPMX19_02783 0.87 +0.3 17,266 + MPMX19_02783 0.87 -0.0 17,266 + MPMX19_02783 0.87 -0.2 17,266 + MPMX19_02783 0.87 +0.5 17,267 - MPMX19_02783 0.87 -0.5 17,267 - MPMX19_02783 0.87 +0.4 17,267 - MPMX19_02783 0.87 -0.1 17,267 - MPMX19_02783 0.87 +1.0 17,267 - MPMX19_02783 0.87 -0.4 17,267 - MPMX19_02783 0.87 -1.7 17,267 - MPMX19_02783 0.87 +0.4 17,274 - MPMX19_02783 0.87 -0.3 17,274 - MPMX19_02783 0.87 +1.0 17,312 + -0.4 17,312 + -0.4 17,385 + -1.4 17,389 + +0.4 17,389 + -0.1 17,390 - -0.7 17,390 - +1.4 17,390 - -0.0 17,390 - -0.5 17,561 + MPMX19_02784 0.22 +0.0 17,775 - MPMX19_02784 0.52 +0.1 17,775 - MPMX19_02784 0.52 +0.2 17,775 - MPMX19_02784 0.52 -0.7 17,775 - MPMX19_02784 0.52 -0.4 17,775 - MPMX19_02784 0.52 +1.2 17,775 - MPMX19_02784 0.52 -0.7 17,780 + MPMX19_02784 0.53 -1.4 17,780 + MPMX19_02784 0.53 -1.6 17,780 + MPMX19_02784 0.53 +0.3 17,780 + MPMX19_02784 0.53 -0.1 17,780 + MPMX19_02784 0.53 -0.6 17,780 + MPMX19_02784 0.53 +0.0 17,780 + MPMX19_02784 0.53 -0.5 17,780 + MPMX19_02784 0.53 -0.8 17,780 + MPMX19_02784 0.53 -0.9 17,780 + MPMX19_02784 0.53 -0.2 17,780 + MPMX19_02784 0.53 +0.6 17,780 + MPMX19_02784 0.53 -0.2 17,780 + MPMX19_02784 0.53 -0.6 17,781 - MPMX19_02784 0.53 -1.0 17,781 - MPMX19_02784 0.53 -0.9 17,781 - MPMX19_02784 0.53 -0.2 17,781 - MPMX19_02784 0.53 +1.6 17,781 - MPMX19_02784 0.53 +1.2 17,781 - MPMX19_02784 0.53 +0.9 17,781 - MPMX19_02784 0.53 -1.9 17,781 - MPMX19_02784 0.53 +3.4 17,781 - MPMX19_02784 0.53 -2.1 18,038 + MPMX19_02784 0.89 +0.0 18,038 + MPMX19_02784 0.89 +0.9 18,038 + MPMX19_02784 0.89 +0.4 18,038 + MPMX19_02784 0.89 -0.1 18,038 + MPMX19_02784 0.89 -0.2 18,038 + MPMX19_02784 0.89 -0.4 18,038 + MPMX19_02784 0.89 -0.5 18,039 - MPMX19_02784 0.89 -0.1 18,039 - MPMX19_02784 0.89 -1.1 18,039 - MPMX19_02784 0.89 +0.6 18,039 - MPMX19_02784 0.89 +0.8 18,039 - MPMX19_02784 0.89 -2.0 18,039 - MPMX19_02784 0.89 +0.6 18,039 - MPMX19_02784 0.89 +0.8 18,068 + +0.9 18,069 - -0.4 18,069 - +0.6
Or see this region's nucleotide sequence