Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02739 and MPMX19_02740 are separated by 164 nucleotides MPMX19_02740 and MPMX19_02741 are separated by 305 nucleotides MPMX19_02741 and MPMX19_02742 are separated by 2 nucleotides MPMX19_02742 and MPMX19_02743 are separated by 1 nucleotides MPMX19_02743 and MPMX19_02744 overlap by 4 nucleotides
MPMX19_02739: MPMX19_02739 - Dihydrofolate synthase/folylpolyglutamate synthase, at 2,883,759 to 2,885,129
_02739
MPMX19_02740: MPMX19_02740 - tRNA-Ala, at 2,885,294 to 2,885,369
_02740
MPMX19_02741: MPMX19_02741 - hypothetical protein, at 2,885,675 to 2,885,959
_02741
MPMX19_02742: MPMX19_02742 - hypothetical protein, at 2,885,962 to 2,886,315
_02742
MPMX19_02743: MPMX19_02743 - Bifunctional protein FolD protein, at 2,886,317 to 2,887,222
_02743
MPMX19_02744: MPMX19_02744 - Magnesium transport protein CorA, at 2,887,219 to 2,888,214
_02744
Position (kb)
2885
2886
2887 Strain fitness (log2 ratio)
-2
-1
0
1 at 2885.259 kb on - strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.517 kb on + strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.518 kb on - strand at 2885.587 kb on + strand at 2885.587 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.593 kb on + strand at 2885.942 kb on + strand at 2885.942 kb on + strand at 2886.152 kb on + strand, within MPMX19_02742 at 2886.152 kb on + strand, within MPMX19_02742 at 2886.152 kb on + strand, within MPMX19_02742 at 2886.152 kb on + strand, within MPMX19_02742 at 2886.152 kb on + strand, within MPMX19_02742 at 2886.152 kb on + strand, within MPMX19_02742 at 2886.313 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,885,259 - -1.4 2,885,517 + -0.1 2,885,517 + +0.4 2,885,517 + +0.8 2,885,517 + +1.0 2,885,517 + +0.4 2,885,517 + +0.7 2,885,517 + -1.4 2,885,517 + -0.4 2,885,518 - -2.0 2,885,518 - +0.4 2,885,518 - -1.7 2,885,518 - +0.9 2,885,518 - -2.3 2,885,518 - -1.3 2,885,518 - -1.3 2,885,518 - -1.4 2,885,587 + -0.3 2,885,587 + +0.1 2,885,593 + +1.5 2,885,593 + -0.6 2,885,593 + -0.1 2,885,593 + -0.8 2,885,593 + -1.1 2,885,593 + -1.5 2,885,593 + -1.1 2,885,942 + -0.1 2,885,942 + -0.2 2,886,152 + MPMX19_02742 0.54 -0.2 2,886,152 + MPMX19_02742 0.54 -1.4 2,886,152 + MPMX19_02742 0.54 -2.5 2,886,152 + MPMX19_02742 0.54 -1.3 2,886,152 + MPMX19_02742 0.54 +0.3 2,886,152 + MPMX19_02742 0.54 +0.0 2,886,313 + -0.0
Or see this region's nucleotide sequence