Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02737 and MPMX19_02738 are separated by 155 nucleotides MPMX19_02738 and MPMX19_02739 are separated by 52 nucleotides
MPMX19_02736: MPMX19_02736 - Tryptophan synthase beta chain, at 2,880,445 to 2,881,662
_02736
MPMX19_02737: MPMX19_02737 - Tryptophan synthase alpha chain, at 2,881,659 to 2,882,504
_02737
MPMX19_02738: MPMX19_02738 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic, at 2,882,660 to 2,883,706
_02738
MPMX19_02739: MPMX19_02739 - Dihydrofolate synthase/folylpolyglutamate synthase, at 2,883,759 to 2,885,129
_02739
Position (kb)
2882
2883
2884 Strain fitness (log2 ratio)
-2
-1
0
1 at 2881.983 kb on + strand, within MPMX19_02737 at 2881.983 kb on + strand, within MPMX19_02737 at 2881.983 kb on + strand, within MPMX19_02737 at 2881.984 kb on - strand, within MPMX19_02737 at 2882.004 kb on + strand, within MPMX19_02737 at 2882.005 kb on - strand, within MPMX19_02737 at 2882.005 kb on - strand, within MPMX19_02737 at 2882.005 kb on - strand, within MPMX19_02737 at 2882.202 kb on + strand, within MPMX19_02737 at 2882.202 kb on + strand, within MPMX19_02737 at 2882.202 kb on + strand, within MPMX19_02737 at 2882.203 kb on - strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.205 kb on + strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.206 kb on - strand, within MPMX19_02737 at 2882.518 kb on + strand at 2882.518 kb on + strand at 2882.518 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2882.539 kb on + strand at 2883.714 kb on + strand at 2883.714 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,881,983 + MPMX19_02737 0.38 -1.7 2,881,983 + MPMX19_02737 0.38 -0.1 2,881,983 + MPMX19_02737 0.38 -2.7 2,881,984 - MPMX19_02737 0.38 -2.0 2,882,004 + MPMX19_02737 0.41 -0.6 2,882,005 - MPMX19_02737 0.41 -0.4 2,882,005 - MPMX19_02737 0.41 -0.7 2,882,005 - MPMX19_02737 0.41 -0.6 2,882,202 + MPMX19_02737 0.64 -2.1 2,882,202 + MPMX19_02737 0.64 -0.2 2,882,202 + MPMX19_02737 0.64 -0.1 2,882,203 - MPMX19_02737 0.64 -1.7 2,882,205 + MPMX19_02737 0.65 -1.0 2,882,205 + MPMX19_02737 0.65 -1.5 2,882,205 + MPMX19_02737 0.65 -0.4 2,882,205 + MPMX19_02737 0.65 +0.5 2,882,205 + MPMX19_02737 0.65 -2.1 2,882,205 + MPMX19_02737 0.65 -0.8 2,882,205 + MPMX19_02737 0.65 -2.6 2,882,205 + MPMX19_02737 0.65 -0.9 2,882,205 + MPMX19_02737 0.65 -1.2 2,882,205 + MPMX19_02737 0.65 -1.8 2,882,206 - MPMX19_02737 0.65 -0.8 2,882,206 - MPMX19_02737 0.65 +0.0 2,882,206 - MPMX19_02737 0.65 -1.3 2,882,206 - MPMX19_02737 0.65 -2.1 2,882,206 - MPMX19_02737 0.65 +0.3 2,882,206 - MPMX19_02737 0.65 -0.8 2,882,206 - MPMX19_02737 0.65 -0.3 2,882,206 - MPMX19_02737 0.65 -0.4 2,882,206 - MPMX19_02737 0.65 -1.1 2,882,206 - MPMX19_02737 0.65 -1.0 2,882,518 + -2.2 2,882,518 + -0.1 2,882,518 + +0.7 2,882,539 + +0.3 2,882,539 + +1.2 2,882,539 + -1.6 2,882,539 + +1.2 2,882,539 + -1.3 2,882,539 + -1.5 2,882,539 + +0.1 2,883,714 + -1.1 2,883,714 + -0.0
Or see this region's nucleotide sequence