Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02738

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02737 and MPMX19_02738 are separated by 155 nucleotidesMPMX19_02738 and MPMX19_02739 are separated by 52 nucleotides MPMX19_02736: MPMX19_02736 - Tryptophan synthase beta chain, at 2,880,445 to 2,881,662 _02736 MPMX19_02737: MPMX19_02737 - Tryptophan synthase alpha chain, at 2,881,659 to 2,882,504 _02737 MPMX19_02738: MPMX19_02738 - Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic, at 2,882,660 to 2,883,706 _02738 MPMX19_02739: MPMX19_02739 - Dihydrofolate synthase/folylpolyglutamate synthase, at 2,883,759 to 2,885,129 _02739 Position (kb) 2882 2883 2884Strain fitness (log2 ratio) -2 -1 0 1at 2881.983 kb on + strand, within MPMX19_02737at 2881.983 kb on + strand, within MPMX19_02737at 2881.983 kb on + strand, within MPMX19_02737at 2881.984 kb on - strand, within MPMX19_02737at 2882.004 kb on + strand, within MPMX19_02737at 2882.005 kb on - strand, within MPMX19_02737at 2882.005 kb on - strand, within MPMX19_02737at 2882.005 kb on - strand, within MPMX19_02737at 2882.202 kb on + strand, within MPMX19_02737at 2882.202 kb on + strand, within MPMX19_02737at 2882.202 kb on + strand, within MPMX19_02737at 2882.203 kb on - strand, within MPMX19_02737at 2882.205 kb on + strand, within MPMX19_02737at 2882.205 kb on + strand, within MPMX19_02737at 2882.205 kb on + strand, within MPMX19_02737at 2882.205 kb on + strand, within MPMX19_02737at 2882.205 kb on + strand, within MPMX19_02737at 2882.205 kb on + strand, within MPMX19_02737at 2882.205 kb on + strand, within MPMX19_02737at 2882.205 kb on + strand, within MPMX19_02737at 2882.205 kb on + strand, within MPMX19_02737at 2882.205 kb on + strand, within MPMX19_02737at 2882.206 kb on - strand, within MPMX19_02737at 2882.206 kb on - strand, within MPMX19_02737at 2882.206 kb on - strand, within MPMX19_02737at 2882.206 kb on - strand, within MPMX19_02737at 2882.206 kb on - strand, within MPMX19_02737at 2882.206 kb on - strand, within MPMX19_02737at 2882.206 kb on - strand, within MPMX19_02737at 2882.206 kb on - strand, within MPMX19_02737at 2882.206 kb on - strand, within MPMX19_02737at 2882.206 kb on - strand, within MPMX19_02737at 2882.518 kb on + strandat 2882.518 kb on + strandat 2882.518 kb on + strandat 2882.539 kb on + strandat 2882.539 kb on + strandat 2882.539 kb on + strandat 2882.539 kb on + strandat 2882.539 kb on + strandat 2882.539 kb on + strandat 2882.539 kb on + strandat 2883.714 kb on + strandat 2883.714 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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2,881,983 + MPMX19_02737 0.38 -1.7
2,881,983 + MPMX19_02737 0.38 -0.1
2,881,983 + MPMX19_02737 0.38 -2.7
2,881,984 - MPMX19_02737 0.38 -2.0
2,882,004 + MPMX19_02737 0.41 -0.6
2,882,005 - MPMX19_02737 0.41 -0.4
2,882,005 - MPMX19_02737 0.41 -0.7
2,882,005 - MPMX19_02737 0.41 -0.6
2,882,202 + MPMX19_02737 0.64 -2.1
2,882,202 + MPMX19_02737 0.64 -0.2
2,882,202 + MPMX19_02737 0.64 -0.1
2,882,203 - MPMX19_02737 0.64 -1.7
2,882,205 + MPMX19_02737 0.65 -1.0
2,882,205 + MPMX19_02737 0.65 -1.5
2,882,205 + MPMX19_02737 0.65 -0.4
2,882,205 + MPMX19_02737 0.65 +0.5
2,882,205 + MPMX19_02737 0.65 -2.1
2,882,205 + MPMX19_02737 0.65 -0.8
2,882,205 + MPMX19_02737 0.65 -2.6
2,882,205 + MPMX19_02737 0.65 -0.9
2,882,205 + MPMX19_02737 0.65 -1.2
2,882,205 + MPMX19_02737 0.65 -1.8
2,882,206 - MPMX19_02737 0.65 -0.8
2,882,206 - MPMX19_02737 0.65 +0.0
2,882,206 - MPMX19_02737 0.65 -1.3
2,882,206 - MPMX19_02737 0.65 -2.1
2,882,206 - MPMX19_02737 0.65 +0.3
2,882,206 - MPMX19_02737 0.65 -0.8
2,882,206 - MPMX19_02737 0.65 -0.3
2,882,206 - MPMX19_02737 0.65 -0.4
2,882,206 - MPMX19_02737 0.65 -1.1
2,882,206 - MPMX19_02737 0.65 -1.0
2,882,518 + -2.2
2,882,518 + -0.1
2,882,518 + +0.7
2,882,539 + +0.3
2,882,539 + +1.2
2,882,539 + -1.6
2,882,539 + +1.2
2,882,539 + -1.3
2,882,539 + -1.5
2,882,539 + +0.1
2,883,714 + -1.1
2,883,714 + -0.0

Or see this region's nucleotide sequence