Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02560

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02558 and MPMX19_02559 overlap by 4 nucleotidesMPMX19_02559 and MPMX19_02560 overlap by 4 nucleotidesMPMX19_02560 and MPMX19_02561 are separated by 10 nucleotidesMPMX19_02561 and MPMX19_02562 overlap by 8 nucleotides MPMX19_02558: MPMX19_02558 - Putative pyruvate, phosphate dikinase regulatory protein, at 2,674,734 to 2,675,573 _02558 MPMX19_02559: MPMX19_02559 - 7-methyl-GTP pyrophosphatase, at 2,675,570 to 2,676,175 _02559 MPMX19_02560: MPMX19_02560 - Shikimate dehydrogenase (NADP(+)), at 2,676,172 to 2,677,044 _02560 MPMX19_02561: MPMX19_02561 - Dephospho-CoA kinase, at 2,677,055 to 2,677,714 _02561 MPMX19_02562: MPMX19_02562 - DNA polymerase III subunit epsilon, at 2,677,707 to 2,678,390 _02562 Position (kb) 2676 2677 2678Strain fitness (log2 ratio) -1 0 1at 2675.214 kb on + strand, within MPMX19_02558at 2675.214 kb on + strand, within MPMX19_02558at 2675.214 kb on + strand, within MPMX19_02558at 2675.214 kb on + strand, within MPMX19_02558at 2675.214 kb on + strand, within MPMX19_02558at 2676.005 kb on + strand, within MPMX19_02559at 2676.005 kb on + strand, within MPMX19_02559at 2676.005 kb on + strand, within MPMX19_02559at 2676.005 kb on + strand, within MPMX19_02559at 2676.005 kb on + strand, within MPMX19_02559at 2676.005 kb on + strand, within MPMX19_02559at 2676.050 kb on + strand, within MPMX19_02559at 2676.050 kb on + strand, within MPMX19_02559at 2676.050 kb on + strand, within MPMX19_02559at 2677.685 kb on + strandat 2677.685 kb on + strandat 2677.686 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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2,675,214 + MPMX19_02558 0.57 -0.3
2,675,214 + MPMX19_02558 0.57 +0.5
2,675,214 + MPMX19_02558 0.57 +0.5
2,675,214 + MPMX19_02558 0.57 +1.4
2,675,214 + MPMX19_02558 0.57 -1.3
2,676,005 + MPMX19_02559 0.72 -0.8
2,676,005 + MPMX19_02559 0.72 +0.6
2,676,005 + MPMX19_02559 0.72 -0.8
2,676,005 + MPMX19_02559 0.72 -1.7
2,676,005 + MPMX19_02559 0.72 -1.7
2,676,005 + MPMX19_02559 0.72 -0.3
2,676,050 + MPMX19_02559 0.79 +0.7
2,676,050 + MPMX19_02559 0.79 -0.3
2,676,050 + MPMX19_02559 0.79 -0.6
2,677,685 + +0.3
2,677,685 + +0.1
2,677,686 - +0.7

Or see this region's nucleotide sequence