Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02484 and MPMX19_02485 are separated by 51 nucleotides MPMX19_02485 and MPMX19_02486 are separated by 159 nucleotides MPMX19_02486 and MPMX19_02487 are separated by 16 nucleotides
MPMX19_02484: MPMX19_02484 - Heat-inducible transcription repressor HrcA, at 2,604,959 to 2,605,999
_02484
MPMX19_02485: MPMX19_02485 - Protein GrpE, at 2,606,051 to 2,606,647
_02485
MPMX19_02486: MPMX19_02486 - Chemotaxis protein CheY, at 2,606,807 to 2,607,172
_02486
MPMX19_02487: MPMX19_02487 - hypothetical protein, at 2,607,189 to 2,608,058
_02487
Position (kb)
2606
2607 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2605.133 kb on + strand, within MPMX19_02484 at 2605.133 kb on + strand, within MPMX19_02484 at 2605.133 kb on + strand, within MPMX19_02484 at 2605.133 kb on + strand, within MPMX19_02484 at 2605.133 kb on + strand, within MPMX19_02484 at 2605.133 kb on + strand, within MPMX19_02484 at 2605.133 kb on + strand, within MPMX19_02484 at 2605.937 kb on + strand at 2605.937 kb on + strand at 2605.937 kb on + strand at 2605.937 kb on + strand at 2605.937 kb on + strand at 2605.938 kb on - strand at 2605.965 kb on - strand at 2605.965 kb on - strand at 2606.635 kb on + strand at 2606.635 kb on + strand at 2606.635 kb on + strand at 2606.635 kb on + strand at 2606.645 kb on + strand at 2606.645 kb on + strand at 2606.645 kb on + strand at 2606.645 kb on + strand at 2606.646 kb on - strand at 2606.646 kb on - strand at 2606.646 kb on - strand at 2606.646 kb on - strand at 2606.651 kb on + strand at 2606.651 kb on + strand at 2606.651 kb on + strand at 2606.651 kb on + strand at 2606.651 kb on + strand at 2606.651 kb on + strand at 2606.651 kb on + strand at 2606.651 kb on + strand at 2606.651 kb on + strand at 2606.651 kb on + strand at 2606.651 kb on + strand at 2606.651 kb on + strand at 2606.652 kb on - strand at 2606.652 kb on - strand at 2606.652 kb on - strand at 2606.652 kb on - strand at 2606.720 kb on + strand at 2606.720 kb on + strand at 2606.721 kb on - strand at 2606.721 kb on - strand at 2606.721 kb on - strand at 2606.721 kb on - strand at 2606.721 kb on - strand at 2606.721 kb on - strand at 2606.725 kb on + strand at 2606.725 kb on + strand at 2606.725 kb on + strand at 2606.725 kb on + strand at 2606.726 kb on - strand at 2606.726 kb on - strand at 2606.726 kb on - strand at 2606.726 kb on - strand at 2606.726 kb on - strand at 2606.759 kb on + strand at 2606.759 kb on + strand at 2606.760 kb on - strand at 2606.760 kb on - strand at 2606.760 kb on - strand at 2606.760 kb on - strand at 2606.772 kb on + strand at 2606.772 kb on + strand at 2606.773 kb on - strand at 2606.773 kb on - strand at 2606.773 kb on - strand at 2606.773 kb on - strand at 2606.773 kb on - strand at 2606.885 kb on + strand, within MPMX19_02486 at 2606.885 kb on + strand, within MPMX19_02486 at 2606.885 kb on + strand, within MPMX19_02486 at 2606.885 kb on + strand, within MPMX19_02486 at 2606.885 kb on + strand, within MPMX19_02486 at 2606.886 kb on - strand, within MPMX19_02486 at 2606.886 kb on - strand, within MPMX19_02486 at 2606.886 kb on - strand, within MPMX19_02486 at 2606.886 kb on - strand, within MPMX19_02486 at 2606.960 kb on - strand, within MPMX19_02486 at 2607.170 kb on + strand at 2607.170 kb on + strand at 2607.170 kb on + strand at 2607.171 kb on - strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.268 kb on + strand at 2607.269 kb on - strand at 2607.269 kb on - strand at 2607.269 kb on - strand at 2607.269 kb on - strand at 2607.269 kb on - strand at 2607.269 kb on - strand at 2607.269 kb on - strand at 2607.269 kb on - strand at 2607.269 kb on - strand at 2607.269 kb on - strand at 2607.269 kb on - strand at 2607.274 kb on + strand at 2607.274 kb on + strand at 2607.274 kb on + strand at 2607.274 kb on + strand at 2607.274 kb on + strand at 2607.274 kb on + strand at 2607.274 kb on + strand at 2607.274 kb on + strand at 2607.275 kb on - strand at 2607.275 kb on - strand at 2607.275 kb on - strand at 2607.275 kb on - strand at 2607.275 kb on - strand at 2607.275 kb on - strand at 2607.275 kb on - strand at 2607.275 kb on - strand at 2607.301 kb on + strand, within MPMX19_02487 at 2607.301 kb on + strand, within MPMX19_02487 at 2607.301 kb on + strand, within MPMX19_02487 at 2607.301 kb on + strand, within MPMX19_02487 at 2607.301 kb on + strand, within MPMX19_02487 at 2607.301 kb on + strand, within MPMX19_02487 at 2607.301 kb on + strand, within MPMX19_02487 at 2607.301 kb on + strand, within MPMX19_02487 at 2607.301 kb on + strand, within MPMX19_02487 at 2607.302 kb on - strand, within MPMX19_02487 at 2607.302 kb on - strand, within MPMX19_02487 at 2607.302 kb on - strand, within MPMX19_02487 at 2607.302 kb on - strand, within MPMX19_02487 at 2607.302 kb on - strand, within MPMX19_02487 at 2607.435 kb on - strand, within MPMX19_02487 at 2607.587 kb on - strand, within MPMX19_02487
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,605,133 + MPMX19_02484 0.17 +0.2 2,605,133 + MPMX19_02484 0.17 +0.1 2,605,133 + MPMX19_02484 0.17 -0.9 2,605,133 + MPMX19_02484 0.17 -1.3 2,605,133 + MPMX19_02484 0.17 -0.9 2,605,133 + MPMX19_02484 0.17 -0.9 2,605,133 + MPMX19_02484 0.17 +0.1 2,605,937 + +0.4 2,605,937 + +0.3 2,605,937 + +0.5 2,605,937 + +1.1 2,605,937 + +0.4 2,605,938 - -0.1 2,605,965 - +1.1 2,605,965 - +0.9 2,606,635 + -0.3 2,606,635 + -0.3 2,606,635 + -1.7 2,606,635 + -0.1 2,606,645 + -0.6 2,606,645 + +1.1 2,606,645 + -0.9 2,606,645 + -0.4 2,606,646 - +0.7 2,606,646 - +1.0 2,606,646 - +0.2 2,606,646 - +0.5 2,606,651 + -1.9 2,606,651 + +1.1 2,606,651 + -1.4 2,606,651 + +0.7 2,606,651 + -0.6 2,606,651 + +0.3 2,606,651 + -1.0 2,606,651 + +1.1 2,606,651 + -0.3 2,606,651 + -0.5 2,606,651 + +0.9 2,606,651 + -0.5 2,606,652 - +0.1 2,606,652 - +0.2 2,606,652 - -1.3 2,606,652 - +0.6 2,606,720 + +0.1 2,606,720 + +0.2 2,606,721 - -0.0 2,606,721 - +0.2 2,606,721 - +0.1 2,606,721 - +0.1 2,606,721 - +0.9 2,606,721 - -0.3 2,606,725 + -0.4 2,606,725 + -1.6 2,606,725 + +0.6 2,606,725 + -0.7 2,606,726 - -0.6 2,606,726 - +0.7 2,606,726 - -0.3 2,606,726 - -0.6 2,606,726 - -0.3 2,606,759 + +0.7 2,606,759 + -1.2 2,606,760 - +0.6 2,606,760 - +0.1 2,606,760 - -0.4 2,606,760 - -0.2 2,606,772 + -0.3 2,606,772 + -1.4 2,606,773 - -1.0 2,606,773 - +0.4 2,606,773 - -1.1 2,606,773 - -0.4 2,606,773 - -0.5 2,606,885 + MPMX19_02486 0.21 -0.3 2,606,885 + MPMX19_02486 0.21 -0.9 2,606,885 + MPMX19_02486 0.21 -0.5 2,606,885 + MPMX19_02486 0.21 -0.4 2,606,885 + MPMX19_02486 0.21 -2.4 2,606,886 - MPMX19_02486 0.22 +0.9 2,606,886 - MPMX19_02486 0.22 +0.5 2,606,886 - MPMX19_02486 0.22 -0.9 2,606,886 - MPMX19_02486 0.22 -1.1 2,606,960 - MPMX19_02486 0.42 -0.7 2,607,170 + +0.7 2,607,170 + -0.4 2,607,170 + +0.6 2,607,171 - -0.5 2,607,268 + -1.2 2,607,268 + -0.7 2,607,268 + -0.6 2,607,268 + +0.1 2,607,268 + +0.4 2,607,268 + +1.7 2,607,268 + -0.7 2,607,268 + +0.2 2,607,268 + -0.4 2,607,268 + -0.2 2,607,268 + +0.1 2,607,268 + +0.2 2,607,268 + +0.4 2,607,268 + +0.1 2,607,268 + -0.6 2,607,268 + -0.7 2,607,268 + +0.6 2,607,268 + +0.9 2,607,268 + +0.9 2,607,268 + -0.1 2,607,269 - +0.4 2,607,269 - +0.1 2,607,269 - +1.5 2,607,269 - +0.5 2,607,269 - -1.3 2,607,269 - +0.1 2,607,269 - +0.7 2,607,269 - +0.9 2,607,269 - -0.7 2,607,269 - -1.6 2,607,269 - -0.1 2,607,274 + +0.1 2,607,274 + +0.4 2,607,274 + +0.5 2,607,274 + -0.1 2,607,274 + +0.1 2,607,274 + +0.7 2,607,274 + -0.9 2,607,274 + +0.3 2,607,275 - -1.6 2,607,275 - -0.4 2,607,275 - -0.4 2,607,275 - -0.3 2,607,275 - -0.2 2,607,275 - -0.6 2,607,275 - +0.5 2,607,275 - -1.0 2,607,301 + MPMX19_02487 0.13 +0.1 2,607,301 + MPMX19_02487 0.13 -2.4 2,607,301 + MPMX19_02487 0.13 -0.8 2,607,301 + MPMX19_02487 0.13 +0.0 2,607,301 + MPMX19_02487 0.13 +0.4 2,607,301 + MPMX19_02487 0.13 +0.4 2,607,301 + MPMX19_02487 0.13 -0.4 2,607,301 + MPMX19_02487 0.13 -0.3 2,607,301 + MPMX19_02487 0.13 -1.4 2,607,302 - MPMX19_02487 0.13 +0.0 2,607,302 - MPMX19_02487 0.13 +1.9 2,607,302 - MPMX19_02487 0.13 +0.8 2,607,302 - MPMX19_02487 0.13 -0.9 2,607,302 - MPMX19_02487 0.13 -1.3 2,607,435 - MPMX19_02487 0.28 -0.9 2,607,587 - MPMX19_02487 0.46 +0.4
Or see this region's nucleotide sequence