Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02450 and MPMX19_02451 are separated by 224 nucleotides MPMX19_02451 and MPMX19_02452 are separated by 85 nucleotides MPMX19_02452 and MPMX19_02453 are separated by 150 nucleotides
MPMX19_02450: MPMX19_02450 - hypothetical protein, at 2,571,471 to 2,572,727
_02450
MPMX19_02451: MPMX19_02451 - tRNA-Met, at 2,572,952 to 2,573,028
_02451
MPMX19_02452: MPMX19_02452 - 5S ribosomal RNA, at 2,573,114 to 2,573,224
_02452
MPMX19_02453: MPMX19_02453 - 23S ribosomal RNA, at 2,573,375 to 2,576,108
_02453
Position (kb)
2572
2573
2574 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2571.986 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.082 kb on + strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.083 kb on - strand, within MPMX19_02450 at 2572.887 kb on + strand at 2572.887 kb on + strand at 2572.887 kb on + strand at 2572.887 kb on + strand at 2572.888 kb on - strand at 2572.888 kb on - strand at 2572.888 kb on - strand at 2572.888 kb on - strand at 2572.888 kb on - strand at 2573.267 kb on - strand at 2573.267 kb on - strand at 2573.267 kb on - strand at 2573.267 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,571,986 + MPMX19_02450 0.41 +1.7 2,572,082 + MPMX19_02450 0.49 -0.6 2,572,082 + MPMX19_02450 0.49 +0.1 2,572,082 + MPMX19_02450 0.49 -1.4 2,572,082 + MPMX19_02450 0.49 -0.1 2,572,082 + MPMX19_02450 0.49 -1.2 2,572,082 + MPMX19_02450 0.49 +0.7 2,572,083 - MPMX19_02450 0.49 -0.3 2,572,083 - MPMX19_02450 0.49 +0.3 2,572,083 - MPMX19_02450 0.49 -0.8 2,572,083 - MPMX19_02450 0.49 -1.1 2,572,083 - MPMX19_02450 0.49 -2.8 2,572,083 - MPMX19_02450 0.49 -0.3 2,572,083 - MPMX19_02450 0.49 -0.6 2,572,887 + -0.0 2,572,887 + -1.2 2,572,887 + +0.2 2,572,887 + -0.2 2,572,888 - +0.3 2,572,888 - -0.9 2,572,888 - -1.1 2,572,888 - -0.5 2,572,888 - +0.6 2,573,267 - +0.5 2,573,267 - -1.9 2,573,267 - -0.0 2,573,267 - -0.7
Or see this region's nucleotide sequence