Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02219 and MPMX19_02220 are separated by 443 nucleotides MPMX19_02220 and MPMX19_02221 are separated by 90 nucleotides MPMX19_02221 and MPMX19_02222 are separated by 95 nucleotides
MPMX19_02219: MPMX19_02219 - hypothetical protein, at 2,323,475 to 2,326,522
_02219
MPMX19_02220: MPMX19_02220 - hypothetical protein, at 2,326,966 to 2,328,093
_02220
MPMX19_02221: MPMX19_02221 - hypothetical protein, at 2,328,184 to 2,328,726
_02221
MPMX19_02222: MPMX19_02222 - hypothetical protein, at 2,328,822 to 2,329,679
_02222
Position (kb)
2326
2327
2328
2329 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2326.134 kb on + strand, within MPMX19_02219 at 2326.134 kb on + strand, within MPMX19_02219 at 2326.134 kb on + strand, within MPMX19_02219 at 2326.135 kb on - strand, within MPMX19_02219 at 2326.135 kb on - strand, within MPMX19_02219 at 2326.135 kb on - strand, within MPMX19_02219 at 2326.135 kb on - strand, within MPMX19_02219 at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.284 kb on + strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.285 kb on - strand at 2326.287 kb on + strand at 2326.287 kb on + strand at 2326.287 kb on + strand at 2326.287 kb on + strand at 2326.287 kb on + strand at 2326.287 kb on + strand at 2326.287 kb on + strand at 2326.287 kb on + strand at 2326.288 kb on - strand at 2326.288 kb on - strand at 2326.288 kb on - strand at 2326.288 kb on - strand at 2326.288 kb on - strand at 2326.288 kb on - strand at 2326.288 kb on - strand at 2326.288 kb on - strand at 2326.365 kb on + strand at 2326.365 kb on + strand at 2326.365 kb on + strand at 2326.365 kb on + strand at 2326.365 kb on + strand at 2326.365 kb on + strand at 2326.365 kb on + strand at 2326.365 kb on + strand at 2326.365 kb on + strand at 2326.366 kb on - strand at 2326.366 kb on - strand at 2326.366 kb on - strand at 2326.366 kb on - strand at 2326.366 kb on - strand at 2326.366 kb on - strand at 2326.366 kb on - strand at 2326.366 kb on - strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.377 kb on + strand at 2326.378 kb on - strand at 2326.378 kb on - strand at 2326.378 kb on - strand at 2326.378 kb on - strand at 2326.490 kb on + strand at 2326.490 kb on + strand at 2326.491 kb on - strand at 2326.590 kb on + strand at 2326.684 kb on - strand at 2326.742 kb on + strand at 2326.743 kb on - strand at 2326.828 kb on + strand at 2327.020 kb on + strand at 2327.020 kb on + strand at 2327.020 kb on + strand at 2327.020 kb on + strand at 2327.020 kb on + strand at 2327.020 kb on + strand at 2327.020 kb on + strand at 2327.020 kb on + strand at 2327.020 kb on + strand at 2327.020 kb on + strand at 2327.020 kb on + strand at 2327.020 kb on + strand at 2327.021 kb on - strand at 2327.021 kb on - strand at 2327.021 kb on - strand at 2327.021 kb on - strand at 2327.021 kb on - strand at 2327.021 kb on - strand at 2327.021 kb on - strand at 2327.021 kb on - strand at 2327.021 kb on - strand at 2327.021 kb on - strand at 2327.021 kb on - strand at 2327.022 kb on + strand at 2327.022 kb on + strand at 2327.022 kb on + strand at 2327.022 kb on + strand at 2327.022 kb on + strand at 2327.022 kb on + strand at 2327.022 kb on + strand at 2327.023 kb on - strand at 2327.023 kb on - strand at 2327.023 kb on - strand at 2327.023 kb on - strand at 2327.023 kb on - strand at 2327.023 kb on - strand at 2327.023 kb on - strand at 2327.023 kb on - strand at 2327.023 kb on - strand at 2327.023 kb on - strand at 2327.023 kb on - strand at 2327.239 kb on + strand, within MPMX19_02220 at 2327.239 kb on + strand, within MPMX19_02220 at 2327.239 kb on + strand, within MPMX19_02220 at 2327.239 kb on + strand, within MPMX19_02220 at 2327.239 kb on + strand, within MPMX19_02220 at 2327.240 kb on - strand, within MPMX19_02220 at 2327.240 kb on - strand, within MPMX19_02220 at 2327.240 kb on - strand, within MPMX19_02220 at 2327.605 kb on + strand, within MPMX19_02220 at 2327.605 kb on + strand, within MPMX19_02220 at 2327.605 kb on + strand, within MPMX19_02220 at 2327.605 kb on + strand, within MPMX19_02220 at 2327.605 kb on + strand, within MPMX19_02220 at 2327.605 kb on + strand, within MPMX19_02220 at 2327.606 kb on - strand, within MPMX19_02220 at 2327.606 kb on - strand, within MPMX19_02220 at 2327.606 kb on - strand, within MPMX19_02220 at 2328.010 kb on + strand at 2328.010 kb on + strand at 2328.010 kb on + strand at 2328.010 kb on + strand at 2328.010 kb on + strand at 2328.010 kb on + strand at 2328.011 kb on - strand at 2328.011 kb on - strand at 2328.011 kb on - strand at 2328.011 kb on - strand at 2328.011 kb on - strand at 2328.011 kb on - strand at 2328.011 kb on - strand at 2328.011 kb on - strand at 2328.011 kb on - strand at 2328.091 kb on + strand at 2328.092 kb on - strand at 2328.092 kb on - strand at 2328.128 kb on + strand at 2328.128 kb on + strand at 2328.128 kb on + strand at 2328.129 kb on - strand at 2328.129 kb on - strand at 2328.515 kb on + strand, within MPMX19_02221 at 2328.515 kb on + strand, within MPMX19_02221 at 2328.515 kb on + strand, within MPMX19_02221 at 2328.515 kb on + strand, within MPMX19_02221 at 2328.515 kb on + strand, within MPMX19_02221 at 2328.515 kb on + strand, within MPMX19_02221 at 2328.515 kb on + strand, within MPMX19_02221 at 2328.515 kb on + strand, within MPMX19_02221 at 2328.515 kb on + strand, within MPMX19_02221 at 2328.515 kb on + strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.516 kb on - strand, within MPMX19_02221 at 2328.652 kb on + strand, within MPMX19_02221 at 2328.652 kb on + strand, within MPMX19_02221 at 2328.652 kb on + strand, within MPMX19_02221 at 2328.653 kb on - strand, within MPMX19_02221 at 2328.653 kb on - strand, within MPMX19_02221 at 2328.653 kb on - strand, within MPMX19_02221 at 2328.653 kb on - strand, within MPMX19_02221 at 2328.653 kb on - strand, within MPMX19_02221 at 2328.653 kb on - strand, within MPMX19_02221 at 2328.753 kb on + strand at 2328.754 kb on - strand at 2328.773 kb on + strand at 2328.774 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 2,326,134 + MPMX19_02219 0.87 -1.0 2,326,134 + MPMX19_02219 0.87 +0.2 2,326,134 + MPMX19_02219 0.87 +0.2 2,326,135 - MPMX19_02219 0.87 -0.8 2,326,135 - MPMX19_02219 0.87 -0.4 2,326,135 - MPMX19_02219 0.87 -0.7 2,326,135 - MPMX19_02219 0.87 -0.0 2,326,284 + +2.2 2,326,284 + -1.1 2,326,284 + +1.2 2,326,284 + +0.6 2,326,284 + -0.8 2,326,284 + +0.8 2,326,284 + -0.0 2,326,284 + +0.1 2,326,284 + -0.7 2,326,284 + -2.0 2,326,284 + -0.6 2,326,284 + +0.7 2,326,284 + +0.8 2,326,284 + +0.7 2,326,284 + +1.0 2,326,284 + -0.0 2,326,284 + -0.4 2,326,284 + -0.5 2,326,284 + -0.4 2,326,284 + +0.7 2,326,284 + +1.0 2,326,284 + -0.8 2,326,284 + -0.4 2,326,285 - -1.2 2,326,285 - +0.7 2,326,285 - +0.5 2,326,285 - +0.4 2,326,285 - -1.8 2,326,285 - -1.5 2,326,285 - -0.0 2,326,285 - +0.5 2,326,285 - +2.2 2,326,285 - -1.0 2,326,285 - -1.3 2,326,285 - +0.6 2,326,285 - -0.4 2,326,285 - -0.3 2,326,285 - -1.4 2,326,285 - +0.1 2,326,285 - -0.4 2,326,285 - -1.0 2,326,285 - -0.3 2,326,285 - +0.1 2,326,287 + +0.2 2,326,287 + +0.1 2,326,287 + +0.9 2,326,287 + -0.0 2,326,287 + +1.1 2,326,287 + +0.7 2,326,287 + +0.4 2,326,287 + -0.1 2,326,288 - -0.7 2,326,288 - +0.3 2,326,288 - -1.1 2,326,288 - -1.5 2,326,288 - -2.3 2,326,288 - -0.7 2,326,288 - +0.7 2,326,288 - +0.8 2,326,365 + +0.7 2,326,365 + +0.2 2,326,365 + -0.1 2,326,365 + +0.4 2,326,365 + -0.3 2,326,365 + +0.5 2,326,365 + -0.1 2,326,365 + -0.5 2,326,365 + +0.7 2,326,366 - -0.3 2,326,366 - -0.5 2,326,366 - -1.5 2,326,366 - +0.8 2,326,366 - -0.2 2,326,366 - +1.0 2,326,366 - -0.5 2,326,366 - +0.6 2,326,377 + +0.2 2,326,377 + -1.0 2,326,377 + -0.8 2,326,377 + +0.2 2,326,377 + -1.6 2,326,377 + -1.1 2,326,377 + -0.4 2,326,377 + -0.6 2,326,377 + -0.4 2,326,377 + -0.6 2,326,377 + +0.8 2,326,377 + -1.1 2,326,377 + -0.7 2,326,377 + +1.1 2,326,377 + -1.7 2,326,378 - -0.6 2,326,378 - +0.1 2,326,378 - -1.3 2,326,378 - +1.5 2,326,490 + -0.2 2,326,490 + -0.0 2,326,491 - +1.5 2,326,590 + +0.9 2,326,684 - -1.0 2,326,742 + +0.2 2,326,743 - +0.2 2,326,828 + +0.4 2,327,020 + +0.0 2,327,020 + -0.0 2,327,020 + +0.7 2,327,020 + +0.1 2,327,020 + +0.4 2,327,020 + +0.9 2,327,020 + -0.3 2,327,020 + +0.1 2,327,020 + -0.2 2,327,020 + +1.7 2,327,020 + -1.3 2,327,020 + +0.4 2,327,021 - +0.1 2,327,021 - -0.5 2,327,021 - -0.3 2,327,021 - -2.4 2,327,021 - -0.0 2,327,021 - +0.1 2,327,021 - +1.0 2,327,021 - -1.8 2,327,021 - -0.6 2,327,021 - +0.1 2,327,021 - +0.2 2,327,022 + +0.4 2,327,022 + +0.0 2,327,022 + -1.9 2,327,022 + +2.2 2,327,022 + +1.0 2,327,022 + -1.1 2,327,022 + -0.7 2,327,023 - -1.6 2,327,023 - +0.3 2,327,023 - -2.3 2,327,023 - -0.3 2,327,023 - -0.6 2,327,023 - +0.3 2,327,023 - -1.7 2,327,023 - -0.3 2,327,023 - -0.9 2,327,023 - -0.0 2,327,023 - -1.1 2,327,239 + MPMX19_02220 0.24 -0.9 2,327,239 + MPMX19_02220 0.24 -0.7 2,327,239 + MPMX19_02220 0.24 +1.1 2,327,239 + MPMX19_02220 0.24 -0.2 2,327,239 + MPMX19_02220 0.24 -1.9 2,327,240 - MPMX19_02220 0.24 -0.1 2,327,240 - MPMX19_02220 0.24 +1.0 2,327,240 - MPMX19_02220 0.24 -0.8 2,327,605 + MPMX19_02220 0.57 -1.5 2,327,605 + MPMX19_02220 0.57 +0.9 2,327,605 + MPMX19_02220 0.57 +0.1 2,327,605 + MPMX19_02220 0.57 -1.1 2,327,605 + MPMX19_02220 0.57 -3.0 2,327,605 + MPMX19_02220 0.57 -0.9 2,327,606 - MPMX19_02220 0.57 +0.5 2,327,606 - MPMX19_02220 0.57 +0.1 2,327,606 - MPMX19_02220 0.57 -2.5 2,328,010 + +0.0 2,328,010 + -0.9 2,328,010 + -0.0 2,328,010 + -0.1 2,328,010 + -1.6 2,328,010 + -0.6 2,328,011 - -1.0 2,328,011 - -0.3 2,328,011 - -0.0 2,328,011 - -0.6 2,328,011 - +0.0 2,328,011 - +0.1 2,328,011 - -1.3 2,328,011 - +0.8 2,328,011 - -0.8 2,328,091 + -0.2 2,328,092 - -0.8 2,328,092 - -0.5 2,328,128 + +1.4 2,328,128 + -1.3 2,328,128 + +0.5 2,328,129 - -0.3 2,328,129 - -0.6 2,328,515 + MPMX19_02221 0.61 +0.0 2,328,515 + MPMX19_02221 0.61 -0.5 2,328,515 + MPMX19_02221 0.61 -1.6 2,328,515 + MPMX19_02221 0.61 -0.3 2,328,515 + MPMX19_02221 0.61 -0.8 2,328,515 + MPMX19_02221 0.61 -1.4 2,328,515 + MPMX19_02221 0.61 -0.1 2,328,515 + MPMX19_02221 0.61 -0.9 2,328,515 + MPMX19_02221 0.61 -1.1 2,328,515 + MPMX19_02221 0.61 -2.1 2,328,516 - MPMX19_02221 0.61 -0.4 2,328,516 - MPMX19_02221 0.61 -0.3 2,328,516 - MPMX19_02221 0.61 +0.4 2,328,516 - MPMX19_02221 0.61 +1.2 2,328,516 - MPMX19_02221 0.61 -1.0 2,328,516 - MPMX19_02221 0.61 -1.9 2,328,516 - MPMX19_02221 0.61 -0.6 2,328,516 - MPMX19_02221 0.61 -2.6 2,328,516 - MPMX19_02221 0.61 +0.2 2,328,516 - MPMX19_02221 0.61 +0.7 2,328,516 - MPMX19_02221 0.61 +0.1 2,328,516 - MPMX19_02221 0.61 -2.0 2,328,516 - MPMX19_02221 0.61 +0.2 2,328,516 - MPMX19_02221 0.61 -0.7 2,328,516 - MPMX19_02221 0.61 -0.3 2,328,516 - MPMX19_02221 0.61 -1.2 2,328,652 + MPMX19_02221 0.86 -0.7 2,328,652 + MPMX19_02221 0.86 -0.0 2,328,652 + MPMX19_02221 0.86 +0.4 2,328,653 - MPMX19_02221 0.86 -1.5 2,328,653 - MPMX19_02221 0.86 +0.4 2,328,653 - MPMX19_02221 0.86 -0.9 2,328,653 - MPMX19_02221 0.86 +0.0 2,328,653 - MPMX19_02221 0.86 +0.7 2,328,653 - MPMX19_02221 0.86 -0.2 2,328,753 + -0.2 2,328,754 - +0.5 2,328,773 + -2.0 2,328,774 - -1.3
Or see this region's nucleotide sequence