Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01642

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01641 and MPMX19_01642 are separated by 149 nucleotidesMPMX19_01642 and MPMX19_01643 are separated by 183 nucleotides MPMX19_01641: MPMX19_01641 - Ribosome-binding ATPase YchF, at 1,725,719 to 1,726,819 _01641 MPMX19_01642: MPMX19_01642 - hypothetical protein, at 1,726,969 to 1,728,639 _01642 MPMX19_01643: MPMX19_01643 - hypothetical protein, at 1,728,823 to 1,729,734 _01643 Position (kb) 1726 1727 1728 1729Strain fitness (log2 ratio) -2 -1 0 1 2at 1726.867 kb on - strandat 1726.887 kb on + strandat 1726.887 kb on + strandat 1726.887 kb on + strandat 1726.888 kb on - strandat 1726.888 kb on - strandat 1726.888 kb on - strandat 1726.895 kb on + strandat 1726.895 kb on + strandat 1726.896 kb on - strandat 1726.912 kb on + strandat 1726.912 kb on + strandat 1726.912 kb on + strandat 1726.912 kb on + strandat 1726.913 kb on - strandat 1726.913 kb on - strandat 1726.913 kb on - strandat 1726.923 kb on + strandat 1726.924 kb on - strandat 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.615 kb on + strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.616 kb on - strand, within MPMX19_01642at 1727.941 kb on + strand, within MPMX19_01642at 1727.941 kb on + strand, within MPMX19_01642at 1727.941 kb on + strand, within MPMX19_01642at 1727.941 kb on + strand, within MPMX19_01642at 1727.941 kb on + strand, within MPMX19_01642at 1727.941 kb on + strand, within MPMX19_01642at 1727.942 kb on - strand, within MPMX19_01642at 1727.942 kb on - strand, within MPMX19_01642at 1727.942 kb on - strand, within MPMX19_01642at 1727.942 kb on - strand, within MPMX19_01642at 1727.942 kb on - strand, within MPMX19_01642at 1727.942 kb on - strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.139 kb on + strand, within MPMX19_01642at 1728.140 kb on - strand, within MPMX19_01642at 1728.140 kb on - strand, within MPMX19_01642at 1728.140 kb on - strand, within MPMX19_01642at 1728.140 kb on - strand, within MPMX19_01642at 1728.140 kb on - strand, within MPMX19_01642at 1728.637 kb on + strandat 1728.637 kb on + strandat 1728.637 kb on + strandat 1728.637 kb on + strandat 1728.637 kb on + strandat 1728.637 kb on + strandat 1728.638 kb on - strandat 1728.638 kb on - strandat 1728.638 kb on - strandat 1728.760 kb on + strandat 1728.783 kb on + strandat 1728.783 kb on + strandat 1728.783 kb on + strandat 1728.784 kb on - strandat 1728.784 kb on - strandat 1728.784 kb on - strandat 1729.168 kb on + strand, within MPMX19_01643at 1729.169 kb on - strand, within MPMX19_01643at 1729.508 kb on + strand, within MPMX19_01643at 1729.509 kb on - strand, within MPMX19_01643at 1729.556 kb on + strand, within MPMX19_01643at 1729.556 kb on + strand, within MPMX19_01643at 1729.556 kb on + strand, within MPMX19_01643at 1729.579 kb on + strand, within MPMX19_01643at 1729.579 kb on + strand, within MPMX19_01643at 1729.579 kb on + strand, within MPMX19_01643at 1729.580 kb on - strand, within MPMX19_01643at 1729.580 kb on - strand, within MPMX19_01643at 1729.580 kb on - strand, within MPMX19_01643at 1729.580 kb on - strand, within MPMX19_01643at 1729.580 kb on - strand, within MPMX19_01643at 1729.580 kb on - strand, within MPMX19_01643at 1729.580 kb on - strand, within MPMX19_01643at 1729.591 kb on + strand, within MPMX19_01643at 1729.591 kb on + strand, within MPMX19_01643at 1729.592 kb on - strand, within MPMX19_01643at 1729.592 kb on - strand, within MPMX19_01643at 1729.615 kb on + strand, within MPMX19_01643at 1729.615 kb on + strand, within MPMX19_01643at 1729.615 kb on + strand, within MPMX19_01643at 1729.615 kb on + strand, within MPMX19_01643at 1729.615 kb on + strand, within MPMX19_01643at 1729.616 kb on - strand, within MPMX19_01643at 1729.616 kb on - strand, within MPMX19_01643at 1729.616 kb on - strand, within MPMX19_01643at 1729.616 kb on - strand, within MPMX19_01643at 1729.616 kb on - strand, within MPMX19_01643at 1729.616 kb on - strand, within MPMX19_01643at 1729.616 kb on - strand, within MPMX19_01643

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,726,867 - -1.0
1,726,887 + +0.2
1,726,887 + +0.2
1,726,887 + +0.4
1,726,888 - -0.4
1,726,888 - +0.5
1,726,888 - -0.6
1,726,895 + -0.6
1,726,895 + -0.4
1,726,896 - +1.5
1,726,912 + -0.3
1,726,912 + -0.8
1,726,912 + -0.5
1,726,912 + -0.5
1,726,913 - -0.8
1,726,913 - -0.5
1,726,913 - -0.0
1,726,923 + +0.1
1,726,924 - -0.3
1,727,615 + MPMX19_01642 0.39 +0.6
1,727,615 + MPMX19_01642 0.39 -1.0
1,727,615 + MPMX19_01642 0.39 +0.6
1,727,615 + MPMX19_01642 0.39 -0.0
1,727,615 + MPMX19_01642 0.39 -0.0
1,727,615 + MPMX19_01642 0.39 -0.2
1,727,615 + MPMX19_01642 0.39 +0.7
1,727,615 + MPMX19_01642 0.39 -0.4
1,727,615 + MPMX19_01642 0.39 +1.3
1,727,615 + MPMX19_01642 0.39 -0.3
1,727,615 + MPMX19_01642 0.39 -1.4
1,727,615 + MPMX19_01642 0.39 -0.0
1,727,615 + MPMX19_01642 0.39 -0.4
1,727,615 + MPMX19_01642 0.39 +2.5
1,727,616 - MPMX19_01642 0.39 +0.4
1,727,616 - MPMX19_01642 0.39 -0.3
1,727,616 - MPMX19_01642 0.39 -0.5
1,727,616 - MPMX19_01642 0.39 -0.6
1,727,616 - MPMX19_01642 0.39 -1.8
1,727,616 - MPMX19_01642 0.39 -0.0
1,727,616 - MPMX19_01642 0.39 -0.6
1,727,616 - MPMX19_01642 0.39 -1.5
1,727,616 - MPMX19_01642 0.39 -0.3
1,727,616 - MPMX19_01642 0.39 +1.1
1,727,616 - MPMX19_01642 0.39 -0.0
1,727,616 - MPMX19_01642 0.39 -0.0
1,727,941 + MPMX19_01642 0.58 +0.3
1,727,941 + MPMX19_01642 0.58 +0.2
1,727,941 + MPMX19_01642 0.58 +0.2
1,727,941 + MPMX19_01642 0.58 -1.0
1,727,941 + MPMX19_01642 0.58 +0.7
1,727,941 + MPMX19_01642 0.58 -0.0
1,727,942 - MPMX19_01642 0.58 -1.8
1,727,942 - MPMX19_01642 0.58 -0.8
1,727,942 - MPMX19_01642 0.58 +0.3
1,727,942 - MPMX19_01642 0.58 +0.0
1,727,942 - MPMX19_01642 0.58 -0.6
1,727,942 - MPMX19_01642 0.58 +1.1
1,728,139 + MPMX19_01642 0.70 -0.1
1,728,139 + MPMX19_01642 0.70 +0.7
1,728,139 + MPMX19_01642 0.70 -0.2
1,728,139 + MPMX19_01642 0.70 -1.9
1,728,139 + MPMX19_01642 0.70 +0.4
1,728,139 + MPMX19_01642 0.70 +0.2
1,728,139 + MPMX19_01642 0.70 +0.7
1,728,139 + MPMX19_01642 0.70 +0.8
1,728,139 + MPMX19_01642 0.70 -0.1
1,728,139 + MPMX19_01642 0.70 -1.2
1,728,139 + MPMX19_01642 0.70 +0.0
1,728,139 + MPMX19_01642 0.70 +0.4
1,728,139 + MPMX19_01642 0.70 +1.0
1,728,140 - MPMX19_01642 0.70 -0.1
1,728,140 - MPMX19_01642 0.70 +1.0
1,728,140 - MPMX19_01642 0.70 +1.0
1,728,140 - MPMX19_01642 0.70 +0.9
1,728,140 - MPMX19_01642 0.70 -0.5
1,728,637 + -0.9
1,728,637 + -0.0
1,728,637 + +0.9
1,728,637 + -1.2
1,728,637 + +1.2
1,728,637 + -0.2
1,728,638 - -0.8
1,728,638 - -0.5
1,728,638 - +0.1
1,728,760 + +1.1
1,728,783 + -1.0
1,728,783 + +0.5
1,728,783 + -0.9
1,728,784 - +1.5
1,728,784 - -0.3
1,728,784 - -2.2
1,729,168 + MPMX19_01643 0.38 +0.2
1,729,169 - MPMX19_01643 0.38 -1.0
1,729,508 + MPMX19_01643 0.75 -0.9
1,729,509 - MPMX19_01643 0.75 +0.4
1,729,556 + MPMX19_01643 0.80 +0.5
1,729,556 + MPMX19_01643 0.80 -0.6
1,729,556 + MPMX19_01643 0.80 -0.3
1,729,579 + MPMX19_01643 0.83 +0.3
1,729,579 + MPMX19_01643 0.83 -0.5
1,729,579 + MPMX19_01643 0.83 -0.5
1,729,580 - MPMX19_01643 0.83 +0.3
1,729,580 - MPMX19_01643 0.83 +2.7
1,729,580 - MPMX19_01643 0.83 +0.7
1,729,580 - MPMX19_01643 0.83 +0.8
1,729,580 - MPMX19_01643 0.83 -0.1
1,729,580 - MPMX19_01643 0.83 -0.8
1,729,580 - MPMX19_01643 0.83 +0.5
1,729,591 + MPMX19_01643 0.84 -1.9
1,729,591 + MPMX19_01643 0.84 +0.1
1,729,592 - MPMX19_01643 0.84 +0.3
1,729,592 - MPMX19_01643 0.84 +1.5
1,729,615 + MPMX19_01643 0.87 -0.8
1,729,615 + MPMX19_01643 0.87 -0.8
1,729,615 + MPMX19_01643 0.87 +0.5
1,729,615 + MPMX19_01643 0.87 -0.1
1,729,615 + MPMX19_01643 0.87 +1.3
1,729,616 - MPMX19_01643 0.87 -1.3
1,729,616 - MPMX19_01643 0.87 -1.9
1,729,616 - MPMX19_01643 0.87 -1.0
1,729,616 - MPMX19_01643 0.87 -0.7
1,729,616 - MPMX19_01643 0.87 -1.4
1,729,616 - MPMX19_01643 0.87 +0.7
1,729,616 - MPMX19_01643 0.87 +0.5

Or see this region's nucleotide sequence