Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01538

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01537 and MPMX19_01538 are separated by 229 nucleotidesMPMX19_01538 and MPMX19_01539 are separated by 100 nucleotidesMPMX19_01539 and MPMX19_01540 are separated by 18 nucleotides MPMX19_01537: MPMX19_01537 - Elongation factor G, at 1,607,884 to 1,610,025 _01537 MPMX19_01538: MPMX19_01538 - 2-iminobutanoate/2-iminopropanoate deaminase, at 1,610,255 to 1,610,602 _01538 MPMX19_01539: MPMX19_01539 - hypothetical protein, at 1,610,703 to 1,611,548 _01539 MPMX19_01540: MPMX19_01540 - DNA topoisomerase 3, at 1,611,567 to 1,613,819 _01540 Position (kb) 1610 1611Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1610.045 kb on - strandat 1610.172 kb on - strandat 1610.172 kb on - strandat 1610.257 kb on - strandat 1610.257 kb on - strandat 1610.257 kb on - strandat 1610.257 kb on - strandat 1610.257 kb on - strandat 1610.257 kb on - strandat 1610.257 kb on - strandat 1610.257 kb on - strandat 1610.261 kb on - strandat 1610.290 kb on - strand, within MPMX19_01538at 1610.290 kb on - strand, within MPMX19_01538at 1610.290 kb on - strand, within MPMX19_01538at 1610.290 kb on - strand, within MPMX19_01538at 1610.290 kb on - strand, within MPMX19_01538at 1610.290 kb on - strand, within MPMX19_01538at 1610.290 kb on - strand, within MPMX19_01538at 1610.290 kb on - strand, within MPMX19_01538at 1610.290 kb on - strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.403 kb on + strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.404 kb on - strand, within MPMX19_01538at 1610.535 kb on + strand, within MPMX19_01538at 1610.535 kb on + strand, within MPMX19_01538at 1610.535 kb on + strand, within MPMX19_01538at 1610.535 kb on + strand, within MPMX19_01538at 1610.535 kb on + strand, within MPMX19_01538at 1610.535 kb on + strand, within MPMX19_01538at 1610.535 kb on + strand, within MPMX19_01538at 1610.536 kb on - strand, within MPMX19_01538at 1610.536 kb on - strand, within MPMX19_01538at 1610.536 kb on - strand, within MPMX19_01538at 1610.536 kb on - strand, within MPMX19_01538at 1610.536 kb on - strand, within MPMX19_01538at 1610.536 kb on - strand, within MPMX19_01538at 1610.536 kb on - strand, within MPMX19_01538at 1610.536 kb on - strand, within MPMX19_01538at 1610.640 kb on + strandat 1610.640 kb on + strandat 1610.640 kb on + strandat 1610.640 kb on + strandat 1610.640 kb on + strandat 1610.641 kb on - strandat 1610.641 kb on - strandat 1610.641 kb on - strandat 1610.641 kb on - strandat 1610.641 kb on - strandat 1610.641 kb on - strandat 1610.641 kb on - strandat 1610.641 kb on - strandat 1610.641 kb on - strandat 1610.641 kb on - strandat 1610.641 kb on - strandat 1610.650 kb on + strandat 1610.651 kb on - strandat 1610.651 kb on - strandat 1610.651 kb on - strandat 1610.656 kb on + strandat 1610.656 kb on + strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.657 kb on - strandat 1610.723 kb on + strandat 1610.862 kb on - strand, within MPMX19_01539at 1610.862 kb on - strand, within MPMX19_01539at 1611.010 kb on + strand, within MPMX19_01539at 1611.010 kb on + strand, within MPMX19_01539at 1611.011 kb on - strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.151 kb on + strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.152 kb on - strand, within MPMX19_01539at 1611.211 kb on + strand, within MPMX19_01539at 1611.211 kb on + strand, within MPMX19_01539at 1611.462 kb on + strand, within MPMX19_01539at 1611.462 kb on + strand, within MPMX19_01539at 1611.463 kb on - strand, within MPMX19_01539at 1611.463 kb on - strand, within MPMX19_01539at 1611.555 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,610,045 - +1.5
1,610,172 - -1.3
1,610,172 - +0.2
1,610,257 - +1.5
1,610,257 - +1.1
1,610,257 - -0.8
1,610,257 - +0.0
1,610,257 - +1.1
1,610,257 - -0.1
1,610,257 - -1.1
1,610,257 - -1.2
1,610,261 - -0.5
1,610,290 - MPMX19_01538 0.10 -1.9
1,610,290 - MPMX19_01538 0.10 +0.1
1,610,290 - MPMX19_01538 0.10 -0.1
1,610,290 - MPMX19_01538 0.10 -0.1
1,610,290 - MPMX19_01538 0.10 +0.7
1,610,290 - MPMX19_01538 0.10 +1.5
1,610,290 - MPMX19_01538 0.10 -0.5
1,610,290 - MPMX19_01538 0.10 +0.2
1,610,290 - MPMX19_01538 0.10 -0.1
1,610,403 + MPMX19_01538 0.43 +0.5
1,610,403 + MPMX19_01538 0.43 +2.5
1,610,403 + MPMX19_01538 0.43 -1.1
1,610,403 + MPMX19_01538 0.43 -0.5
1,610,403 + MPMX19_01538 0.43 -0.1
1,610,403 + MPMX19_01538 0.43 -0.1
1,610,403 + MPMX19_01538 0.43 +1.5
1,610,403 + MPMX19_01538 0.43 +1.1
1,610,403 + MPMX19_01538 0.43 +0.7
1,610,403 + MPMX19_01538 0.43 +0.3
1,610,403 + MPMX19_01538 0.43 +0.5
1,610,403 + MPMX19_01538 0.43 -0.1
1,610,403 + MPMX19_01538 0.43 +2.1
1,610,403 + MPMX19_01538 0.43 -0.5
1,610,403 + MPMX19_01538 0.43 -0.8
1,610,403 + MPMX19_01538 0.43 -0.8
1,610,403 + MPMX19_01538 0.43 -0.4
1,610,403 + MPMX19_01538 0.43 +0.3
1,610,403 + MPMX19_01538 0.43 -0.2
1,610,404 - MPMX19_01538 0.43 +0.1
1,610,404 - MPMX19_01538 0.43 +0.3
1,610,404 - MPMX19_01538 0.43 +1.5
1,610,404 - MPMX19_01538 0.43 -0.8
1,610,404 - MPMX19_01538 0.43 +0.4
1,610,404 - MPMX19_01538 0.43 +0.1
1,610,404 - MPMX19_01538 0.43 -0.2
1,610,404 - MPMX19_01538 0.43 -0.8
1,610,404 - MPMX19_01538 0.43 -0.1
1,610,404 - MPMX19_01538 0.43 +0.5
1,610,404 - MPMX19_01538 0.43 +0.6
1,610,404 - MPMX19_01538 0.43 +0.3
1,610,404 - MPMX19_01538 0.43 +0.6
1,610,404 - MPMX19_01538 0.43 -0.6
1,610,404 - MPMX19_01538 0.43 +1.1
1,610,404 - MPMX19_01538 0.43 -0.8
1,610,404 - MPMX19_01538 0.43 -0.1
1,610,404 - MPMX19_01538 0.43 +0.1
1,610,404 - MPMX19_01538 0.43 +0.9
1,610,404 - MPMX19_01538 0.43 +3.1
1,610,404 - MPMX19_01538 0.43 +0.6
1,610,404 - MPMX19_01538 0.43 -0.9
1,610,404 - MPMX19_01538 0.43 +1.1
1,610,404 - MPMX19_01538 0.43 +1.5
1,610,404 - MPMX19_01538 0.43 -0.2
1,610,404 - MPMX19_01538 0.43 +0.5
1,610,404 - MPMX19_01538 0.43 -1.5
1,610,404 - MPMX19_01538 0.43 +0.1
1,610,404 - MPMX19_01538 0.43 -0.6
1,610,404 - MPMX19_01538 0.43 -0.1
1,610,404 - MPMX19_01538 0.43 +1.5
1,610,404 - MPMX19_01538 0.43 -1.6
1,610,404 - MPMX19_01538 0.43 +0.4
1,610,404 - MPMX19_01538 0.43 -1.2
1,610,404 - MPMX19_01538 0.43 -0.9
1,610,404 - MPMX19_01538 0.43 +0.9
1,610,404 - MPMX19_01538 0.43 -0.3
1,610,535 + MPMX19_01538 0.80 +0.3
1,610,535 + MPMX19_01538 0.80 +0.2
1,610,535 + MPMX19_01538 0.80 +1.5
1,610,535 + MPMX19_01538 0.80 -0.1
1,610,535 + MPMX19_01538 0.80 +0.6
1,610,535 + MPMX19_01538 0.80 +1.3
1,610,535 + MPMX19_01538 0.80 +0.5
1,610,536 - MPMX19_01538 0.81 +0.7
1,610,536 - MPMX19_01538 0.81 -0.5
1,610,536 - MPMX19_01538 0.81 -0.9
1,610,536 - MPMX19_01538 0.81 +0.2
1,610,536 - MPMX19_01538 0.81 +0.8
1,610,536 - MPMX19_01538 0.81 -0.2
1,610,536 - MPMX19_01538 0.81 -1.1
1,610,536 - MPMX19_01538 0.81 +0.5
1,610,640 + -0.4
1,610,640 + -0.3
1,610,640 + +0.2
1,610,640 + -0.8
1,610,640 + -0.2
1,610,641 - -2.2
1,610,641 - +0.1
1,610,641 - +1.0
1,610,641 - -0.3
1,610,641 - +0.6
1,610,641 - +0.5
1,610,641 - +1.3
1,610,641 - -1.6
1,610,641 - -0.5
1,610,641 - -0.1
1,610,641 - -1.2
1,610,650 + -1.6
1,610,651 - +0.5
1,610,651 - -0.5
1,610,651 - -0.9
1,610,656 + -0.1
1,610,656 + -0.3
1,610,657 - +0.9
1,610,657 - -0.2
1,610,657 - -0.4
1,610,657 - -1.6
1,610,657 - -0.9
1,610,657 - -0.3
1,610,657 - -0.9
1,610,657 - -0.6
1,610,657 - +0.4
1,610,657 - +0.1
1,610,657 - +0.3
1,610,657 - +0.5
1,610,657 - -1.3
1,610,657 - +0.7
1,610,657 - -0.1
1,610,657 - -0.6
1,610,657 - -0.4
1,610,723 + +0.5
1,610,862 - MPMX19_01539 0.19 -0.1
1,610,862 - MPMX19_01539 0.19 -1.5
1,611,010 + MPMX19_01539 0.36 -0.9
1,611,010 + MPMX19_01539 0.36 -0.1
1,611,011 - MPMX19_01539 0.36 +1.0
1,611,151 + MPMX19_01539 0.53 -0.2
1,611,151 + MPMX19_01539 0.53 -1.4
1,611,151 + MPMX19_01539 0.53 +0.7
1,611,151 + MPMX19_01539 0.53 +0.2
1,611,151 + MPMX19_01539 0.53 +0.3
1,611,151 + MPMX19_01539 0.53 -0.0
1,611,151 + MPMX19_01539 0.53 -1.3
1,611,151 + MPMX19_01539 0.53 +0.2
1,611,151 + MPMX19_01539 0.53 +0.8
1,611,151 + MPMX19_01539 0.53 -0.4
1,611,151 + MPMX19_01539 0.53 +1.8
1,611,151 + MPMX19_01539 0.53 +0.4
1,611,151 + MPMX19_01539 0.53 +0.9
1,611,151 + MPMX19_01539 0.53 +0.3
1,611,151 + MPMX19_01539 0.53 +0.2
1,611,151 + MPMX19_01539 0.53 -0.7
1,611,151 + MPMX19_01539 0.53 -1.1
1,611,151 + MPMX19_01539 0.53 -1.2
1,611,151 + MPMX19_01539 0.53 -0.6
1,611,151 + MPMX19_01539 0.53 -0.4
1,611,152 - MPMX19_01539 0.53 -1.0
1,611,152 - MPMX19_01539 0.53 -0.1
1,611,152 - MPMX19_01539 0.53 -0.2
1,611,152 - MPMX19_01539 0.53 -0.2
1,611,152 - MPMX19_01539 0.53 -0.4
1,611,152 - MPMX19_01539 0.53 -0.8
1,611,152 - MPMX19_01539 0.53 -0.4
1,611,152 - MPMX19_01539 0.53 -0.4
1,611,152 - MPMX19_01539 0.53 -0.1
1,611,152 - MPMX19_01539 0.53 +0.7
1,611,152 - MPMX19_01539 0.53 -1.5
1,611,152 - MPMX19_01539 0.53 +0.1
1,611,152 - MPMX19_01539 0.53 -0.6
1,611,152 - MPMX19_01539 0.53 -1.1
1,611,152 - MPMX19_01539 0.53 +0.6
1,611,152 - MPMX19_01539 0.53 -0.7
1,611,152 - MPMX19_01539 0.53 -1.2
1,611,152 - MPMX19_01539 0.53 +0.5
1,611,152 - MPMX19_01539 0.53 -1.1
1,611,152 - MPMX19_01539 0.53 -0.3
1,611,152 - MPMX19_01539 0.53 -0.0
1,611,152 - MPMX19_01539 0.53 +0.2
1,611,152 - MPMX19_01539 0.53 +0.1
1,611,211 + MPMX19_01539 0.60 +0.1
1,611,211 + MPMX19_01539 0.60 +1.1
1,611,462 + MPMX19_01539 0.90 -0.1
1,611,462 + MPMX19_01539 0.90 -0.7
1,611,463 - MPMX19_01539 0.90 +1.1
1,611,463 - MPMX19_01539 0.90 -0.9
1,611,555 - -0.3

Or see this region's nucleotide sequence