Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01468

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01467 and MPMX19_01468 are separated by 51 nucleotidesMPMX19_01468 and MPMX19_01469 are separated by 9 nucleotidesMPMX19_01469 and MPMX19_01470 overlap by 4 nucleotides MPMX19_01467: MPMX19_01467 - hypothetical protein, at 1,539,356 to 1,540,486 _01467 MPMX19_01468: MPMX19_01468 - Methionine--tRNA ligase, at 1,540,538 to 1,542,088 _01468 MPMX19_01469: MPMX19_01469 - putative metal-dependent hydrolase YcfH, at 1,542,098 to 1,542,892 _01469 MPMX19_01470: MPMX19_01470 - hypothetical protein, at 1,542,889 to 1,543,698 _01470 Position (kb) 1540 1541 1542 1543Strain fitness (log2 ratio) -2 -1 0 1at 1540.484 kb on + strandat 1540.484 kb on + strandat 1540.490 kb on + strandat 1540.490 kb on + strandat 1542.097 kb on + strandat 1542.097 kb on + strandat 1542.097 kb on + strandat 1542.097 kb on + strandat 1542.097 kb on + strandat 1542.097 kb on + strandat 1542.098 kb on - strandat 1542.098 kb on - strandat 1542.098 kb on - strandat 1542.098 kb on - strandat 1542.098 kb on - strandat 1542.098 kb on - strandat 1542.098 kb on - strandat 1542.098 kb on - strandat 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.212 kb on + strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.213 kb on - strand, within MPMX19_01469at 1542.254 kb on + strand, within MPMX19_01469at 1542.254 kb on + strand, within MPMX19_01469at 1542.254 kb on + strand, within MPMX19_01469at 1542.255 kb on - strand, within MPMX19_01469at 1542.255 kb on - strand, within MPMX19_01469at 1542.255 kb on - strand, within MPMX19_01469at 1542.255 kb on - strand, within MPMX19_01469at 1542.389 kb on + strand, within MPMX19_01469at 1542.389 kb on + strand, within MPMX19_01469at 1542.390 kb on - strand, within MPMX19_01469at 1542.390 kb on - strand, within MPMX19_01469at 1542.390 kb on - strand, within MPMX19_01469at 1542.390 kb on - strand, within MPMX19_01469at 1542.390 kb on - strand, within MPMX19_01469at 1542.390 kb on - strand, within MPMX19_01469at 1542.396 kb on - strand, within MPMX19_01469at 1542.605 kb on + strand, within MPMX19_01469at 1542.606 kb on - strand, within MPMX19_01469at 1542.606 kb on - strand, within MPMX19_01469at 1542.719 kb on + strand, within MPMX19_01469at 1542.719 kb on + strand, within MPMX19_01469at 1542.719 kb on + strand, within MPMX19_01469at 1542.720 kb on - strand, within MPMX19_01469at 1542.720 kb on - strand, within MPMX19_01469at 1542.764 kb on + strand, within MPMX19_01469at 1542.764 kb on + strand, within MPMX19_01469at 1542.764 kb on + strand, within MPMX19_01469at 1542.764 kb on + strand, within MPMX19_01469at 1542.764 kb on + strand, within MPMX19_01469at 1542.764 kb on + strand, within MPMX19_01469at 1542.764 kb on + strand, within MPMX19_01469at 1542.764 kb on + strand, within MPMX19_01469at 1542.764 kb on + strand, within MPMX19_01469at 1542.764 kb on + strand, within MPMX19_01469at 1542.764 kb on + strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1542.765 kb on - strand, within MPMX19_01469at 1543.080 kb on + strand, within MPMX19_01470at 1543.080 kb on + strand, within MPMX19_01470at 1543.080 kb on + strand, within MPMX19_01470at 1543.080 kb on + strand, within MPMX19_01470at 1543.080 kb on + strand, within MPMX19_01470at 1543.081 kb on - strand, within MPMX19_01470at 1543.081 kb on - strand, within MPMX19_01470at 1543.081 kb on - strand, within MPMX19_01470

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,540,484 + -1.3
1,540,484 + +0.2
1,540,490 + +1.5
1,540,490 + -1.9
1,542,097 + -0.3
1,542,097 + -1.1
1,542,097 + +0.8
1,542,097 + -0.2
1,542,097 + -0.5
1,542,097 + +1.3
1,542,098 - +1.1
1,542,098 - -0.3
1,542,098 - -0.3
1,542,098 - +0.9
1,542,098 - +0.2
1,542,098 - +0.3
1,542,098 - -2.7
1,542,098 - -1.5
1,542,212 + MPMX19_01469 0.14 -1.1
1,542,212 + MPMX19_01469 0.14 +1.2
1,542,212 + MPMX19_01469 0.14 -0.8
1,542,212 + MPMX19_01469 0.14 -1.5
1,542,212 + MPMX19_01469 0.14 -0.5
1,542,212 + MPMX19_01469 0.14 -0.7
1,542,212 + MPMX19_01469 0.14 -0.9
1,542,212 + MPMX19_01469 0.14 -0.9
1,542,212 + MPMX19_01469 0.14 +1.0
1,542,212 + MPMX19_01469 0.14 +0.4
1,542,212 + MPMX19_01469 0.14 -1.9
1,542,212 + MPMX19_01469 0.14 -1.1
1,542,212 + MPMX19_01469 0.14 -1.1
1,542,212 + MPMX19_01469 0.14 +0.2
1,542,212 + MPMX19_01469 0.14 -1.0
1,542,212 + MPMX19_01469 0.14 -0.6
1,542,212 + MPMX19_01469 0.14 -1.5
1,542,212 + MPMX19_01469 0.14 -2.2
1,542,213 - MPMX19_01469 0.14 -1.5
1,542,213 - MPMX19_01469 0.14 +1.2
1,542,213 - MPMX19_01469 0.14 -0.5
1,542,213 - MPMX19_01469 0.14 +0.9
1,542,213 - MPMX19_01469 0.14 -0.7
1,542,213 - MPMX19_01469 0.14 +0.6
1,542,213 - MPMX19_01469 0.14 +0.2
1,542,213 - MPMX19_01469 0.14 -0.5
1,542,213 - MPMX19_01469 0.14 -0.3
1,542,213 - MPMX19_01469 0.14 -0.9
1,542,213 - MPMX19_01469 0.14 -0.8
1,542,213 - MPMX19_01469 0.14 -1.1
1,542,213 - MPMX19_01469 0.14 -0.6
1,542,213 - MPMX19_01469 0.14 -2.1
1,542,213 - MPMX19_01469 0.14 -1.8
1,542,213 - MPMX19_01469 0.14 -0.9
1,542,254 + MPMX19_01469 0.20 -1.5
1,542,254 + MPMX19_01469 0.20 +0.7
1,542,254 + MPMX19_01469 0.20 -0.0
1,542,255 - MPMX19_01469 0.20 -0.4
1,542,255 - MPMX19_01469 0.20 +0.2
1,542,255 - MPMX19_01469 0.20 +0.1
1,542,255 - MPMX19_01469 0.20 -1.1
1,542,389 + MPMX19_01469 0.37 -2.2
1,542,389 + MPMX19_01469 0.37 -0.3
1,542,390 - MPMX19_01469 0.37 -2.1
1,542,390 - MPMX19_01469 0.37 +1.2
1,542,390 - MPMX19_01469 0.37 +0.4
1,542,390 - MPMX19_01469 0.37 -0.5
1,542,390 - MPMX19_01469 0.37 -1.3
1,542,390 - MPMX19_01469 0.37 -0.6
1,542,396 - MPMX19_01469 0.37 -0.2
1,542,605 + MPMX19_01469 0.64 -0.5
1,542,606 - MPMX19_01469 0.64 -0.3
1,542,606 - MPMX19_01469 0.64 -1.5
1,542,719 + MPMX19_01469 0.78 -0.3
1,542,719 + MPMX19_01469 0.78 -1.5
1,542,719 + MPMX19_01469 0.78 +0.1
1,542,720 - MPMX19_01469 0.78 +0.4
1,542,720 - MPMX19_01469 0.78 -0.4
1,542,764 + MPMX19_01469 0.84 -2.2
1,542,764 + MPMX19_01469 0.84 +0.9
1,542,764 + MPMX19_01469 0.84 +1.2
1,542,764 + MPMX19_01469 0.84 +0.1
1,542,764 + MPMX19_01469 0.84 -0.8
1,542,764 + MPMX19_01469 0.84 -0.1
1,542,764 + MPMX19_01469 0.84 -0.3
1,542,764 + MPMX19_01469 0.84 +0.8
1,542,764 + MPMX19_01469 0.84 +1.2
1,542,764 + MPMX19_01469 0.84 +0.1
1,542,764 + MPMX19_01469 0.84 +0.9
1,542,765 - MPMX19_01469 0.84 +0.2
1,542,765 - MPMX19_01469 0.84 +0.4
1,542,765 - MPMX19_01469 0.84 +0.2
1,542,765 - MPMX19_01469 0.84 +0.5
1,542,765 - MPMX19_01469 0.84 +0.9
1,542,765 - MPMX19_01469 0.84 -0.6
1,542,765 - MPMX19_01469 0.84 -2.6
1,542,765 - MPMX19_01469 0.84 +0.7
1,542,765 - MPMX19_01469 0.84 -0.4
1,542,765 - MPMX19_01469 0.84 -0.1
1,542,765 - MPMX19_01469 0.84 -0.4
1,542,765 - MPMX19_01469 0.84 -0.8
1,543,080 + MPMX19_01470 0.24 +1.3
1,543,080 + MPMX19_01470 0.24 +0.2
1,543,080 + MPMX19_01470 0.24 -1.4
1,543,080 + MPMX19_01470 0.24 -1.5
1,543,080 + MPMX19_01470 0.24 -1.5
1,543,081 - MPMX19_01470 0.24 -1.9
1,543,081 - MPMX19_01470 0.24 +0.4
1,543,081 - MPMX19_01470 0.24 +0.1

Or see this region's nucleotide sequence