Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01224

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01223 and MPMX19_01224 are separated by 137 nucleotidesMPMX19_01224 and MPMX19_01225 are separated by 23 nucleotidesMPMX19_01225 and MPMX19_01226 are separated by 141 nucleotides MPMX19_01223: MPMX19_01223 - Multidrug resistance protein NorM, at 1,272,680 to 1,274,038 _01223 MPMX19_01224: MPMX19_01224 - DNA gyrase subunit A, at 1,274,176 to 1,276,977 _01224 MPMX19_01225: MPMX19_01225 - Phosphopantetheine adenylyltransferase, at 1,277,001 to 1,277,564 _01225 MPMX19_01226: MPMX19_01226 - tRNA-Lys, at 1,277,706 to 1,277,781 _01226 Position (kb) 1274 1275 1276 1277Strain fitness (log2 ratio) -2 -1 0 1at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.343 kb on + strand, within MPMX19_01223at 1273.344 kb on - strand, within MPMX19_01223at 1273.344 kb on - strand, within MPMX19_01223at 1273.344 kb on - strand, within MPMX19_01223at 1273.344 kb on - strand, within MPMX19_01223at 1273.344 kb on - strand, within MPMX19_01223at 1273.344 kb on - strand, within MPMX19_01223at 1273.344 kb on - strand, within MPMX19_01223at 1273.344 kb on - strand, within MPMX19_01223at 1273.344 kb on - strand, within MPMX19_01223at 1273.344 kb on - strand, within MPMX19_01223at 1273.344 kb on - strand, within MPMX19_01223at 1273.437 kb on - strand, within MPMX19_01223at 1273.529 kb on + strand, within MPMX19_01223at 1273.529 kb on + strand, within MPMX19_01223at 1273.529 kb on + strand, within MPMX19_01223at 1273.529 kb on + strand, within MPMX19_01223at 1273.529 kb on + strand, within MPMX19_01223at 1273.529 kb on + strand, within MPMX19_01223at 1273.529 kb on + strand, within MPMX19_01223at 1273.529 kb on + strand, within MPMX19_01223at 1273.530 kb on - strand, within MPMX19_01223at 1273.530 kb on - strand, within MPMX19_01223at 1273.616 kb on + strand, within MPMX19_01223at 1273.616 kb on + strand, within MPMX19_01223at 1273.616 kb on + strand, within MPMX19_01223at 1273.617 kb on - strand, within MPMX19_01223at 1273.617 kb on - strand, within MPMX19_01223at 1273.706 kb on + strand, within MPMX19_01223at 1273.706 kb on + strand, within MPMX19_01223at 1273.706 kb on + strand, within MPMX19_01223at 1273.707 kb on - strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.739 kb on + strand, within MPMX19_01223at 1273.740 kb on - strand, within MPMX19_01223at 1273.740 kb on - strand, within MPMX19_01223at 1273.740 kb on - strand, within MPMX19_01223at 1273.740 kb on - strand, within MPMX19_01223at 1273.740 kb on - strand, within MPMX19_01223at 1273.740 kb on - strand, within MPMX19_01223at 1273.740 kb on - strand, within MPMX19_01223at 1273.740 kb on - strand, within MPMX19_01223at 1273.740 kb on - strand, within MPMX19_01223at 1273.893 kb on - strand, within MPMX19_01223at 1274.021 kb on + strandat 1274.021 kb on + strandat 1274.022 kb on - strandat 1274.022 kb on - strandat 1274.087 kb on + strandat 1274.087 kb on + strandat 1274.155 kb on + strandat 1274.155 kb on + strandat 1274.155 kb on + strandat 1274.155 kb on + strandat 1274.156 kb on + strandat 1276.975 kb on + strandat 1276.988 kb on + strandat 1276.988 kb on + strandat 1276.988 kb on + strandat 1276.989 kb on - strandat 1277.798 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.830 kb on - strandat 1277.830 kb on - strandat 1277.921 kb on + strandat 1277.921 kb on + strandat 1277.921 kb on + strandat 1277.921 kb on + strandat 1277.933 kb on + strandat 1277.933 kb on + strandat 1277.950 kb on + strandat 1277.950 kb on + strandat 1277.951 kb on - strandat 1277.951 kb on - strandat 1277.953 kb on + strandat 1277.953 kb on + strandat 1277.953 kb on + strandat 1277.953 kb on + strandat 1277.953 kb on + strandat 1277.953 kb on + strandat 1277.954 kb on - strandat 1277.954 kb on - strandat 1277.976 kb on + strandat 1277.976 kb on + strandat 1277.977 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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1,273,343 + MPMX19_01223 0.49 -1.8
1,273,343 + MPMX19_01223 0.49 +0.1
1,273,343 + MPMX19_01223 0.49 -0.3
1,273,343 + MPMX19_01223 0.49 -1.5
1,273,343 + MPMX19_01223 0.49 +0.0
1,273,343 + MPMX19_01223 0.49 +0.4
1,273,343 + MPMX19_01223 0.49 +0.0
1,273,343 + MPMX19_01223 0.49 -0.2
1,273,343 + MPMX19_01223 0.49 -0.3
1,273,343 + MPMX19_01223 0.49 -0.7
1,273,343 + MPMX19_01223 0.49 -1.8
1,273,343 + MPMX19_01223 0.49 -1.7
1,273,343 + MPMX19_01223 0.49 -0.1
1,273,343 + MPMX19_01223 0.49 +0.7
1,273,343 + MPMX19_01223 0.49 +0.8
1,273,343 + MPMX19_01223 0.49 +0.5
1,273,343 + MPMX19_01223 0.49 -1.1
1,273,343 + MPMX19_01223 0.49 -0.4
1,273,343 + MPMX19_01223 0.49 -0.1
1,273,344 - MPMX19_01223 0.49 -0.5
1,273,344 - MPMX19_01223 0.49 +0.5
1,273,344 - MPMX19_01223 0.49 +0.7
1,273,344 - MPMX19_01223 0.49 -0.6
1,273,344 - MPMX19_01223 0.49 -0.8
1,273,344 - MPMX19_01223 0.49 +0.3
1,273,344 - MPMX19_01223 0.49 -2.0
1,273,344 - MPMX19_01223 0.49 +1.7
1,273,344 - MPMX19_01223 0.49 -0.9
1,273,344 - MPMX19_01223 0.49 +0.2
1,273,344 - MPMX19_01223 0.49 -0.8
1,273,437 - MPMX19_01223 0.56 -1.3
1,273,529 + MPMX19_01223 0.62 -0.2
1,273,529 + MPMX19_01223 0.62 -0.0
1,273,529 + MPMX19_01223 0.62 +0.6
1,273,529 + MPMX19_01223 0.62 -2.0
1,273,529 + MPMX19_01223 0.62 -0.0
1,273,529 + MPMX19_01223 0.62 -0.3
1,273,529 + MPMX19_01223 0.62 +1.0
1,273,529 + MPMX19_01223 0.62 +0.3
1,273,530 - MPMX19_01223 0.63 -0.3
1,273,530 - MPMX19_01223 0.63 -2.0
1,273,616 + MPMX19_01223 0.69 -0.5
1,273,616 + MPMX19_01223 0.69 -1.3
1,273,616 + MPMX19_01223 0.69 -2.1
1,273,617 - MPMX19_01223 0.69 -0.4
1,273,617 - MPMX19_01223 0.69 +1.0
1,273,706 + MPMX19_01223 0.75 +0.9
1,273,706 + MPMX19_01223 0.75 -2.0
1,273,706 + MPMX19_01223 0.75 -0.7
1,273,707 - MPMX19_01223 0.76 -0.7
1,273,739 + MPMX19_01223 0.78 +0.6
1,273,739 + MPMX19_01223 0.78 -0.7
1,273,739 + MPMX19_01223 0.78 +0.7
1,273,739 + MPMX19_01223 0.78 -1.0
1,273,739 + MPMX19_01223 0.78 -0.5
1,273,739 + MPMX19_01223 0.78 -2.0
1,273,739 + MPMX19_01223 0.78 -1.2
1,273,739 + MPMX19_01223 0.78 +0.0
1,273,739 + MPMX19_01223 0.78 -0.5
1,273,739 + MPMX19_01223 0.78 -0.2
1,273,739 + MPMX19_01223 0.78 -1.7
1,273,739 + MPMX19_01223 0.78 -0.5
1,273,739 + MPMX19_01223 0.78 -0.9
1,273,739 + MPMX19_01223 0.78 -1.1
1,273,740 - MPMX19_01223 0.78 -1.1
1,273,740 - MPMX19_01223 0.78 +0.3
1,273,740 - MPMX19_01223 0.78 +0.4
1,273,740 - MPMX19_01223 0.78 +0.1
1,273,740 - MPMX19_01223 0.78 -1.1
1,273,740 - MPMX19_01223 0.78 +0.0
1,273,740 - MPMX19_01223 0.78 -1.2
1,273,740 - MPMX19_01223 0.78 +0.1
1,273,740 - MPMX19_01223 0.78 +0.6
1,273,893 - MPMX19_01223 0.89 +0.0
1,274,021 + -0.9
1,274,021 + -2.7
1,274,022 - +0.3
1,274,022 - -0.9
1,274,087 + -2.2
1,274,087 + -1.0
1,274,155 + -1.3
1,274,155 + -0.3
1,274,155 + -0.1
1,274,155 + -2.3
1,274,156 + +0.3
1,276,975 + -1.1
1,276,988 + -2.2
1,276,988 + -1.1
1,276,988 + +0.0
1,276,989 - +0.5
1,277,798 + -1.2
1,277,829 + -0.7
1,277,829 + +1.2
1,277,829 + -0.5
1,277,829 + +0.3
1,277,829 + +1.5
1,277,829 + -1.7
1,277,829 + -1.3
1,277,829 + +0.5
1,277,829 + +0.5
1,277,830 - -0.7
1,277,830 - -1.5
1,277,921 + -1.2
1,277,921 + -0.3
1,277,921 + -0.1
1,277,921 + +0.4
1,277,933 + -1.1
1,277,933 + -0.7
1,277,950 + -0.0
1,277,950 + +0.2
1,277,951 - -0.3
1,277,951 - +0.7
1,277,953 + -0.7
1,277,953 + -1.5
1,277,953 + -1.2
1,277,953 + +0.1
1,277,953 + -1.5
1,277,953 + +0.4
1,277,954 - +0.9
1,277,954 - +0.2
1,277,976 + -0.3
1,277,976 + +0.9
1,277,977 - -0.1

Or see this region's nucleotide sequence