Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00850

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00849 and MPMX19_00850 are separated by 362 nucleotidesMPMX19_00850 and MPMX19_00851 are separated by 294 nucleotides MPMX19_00849: MPMX19_00849 - hypothetical protein, at 880,872 to 881,894 _00849 MPMX19_00850: MPMX19_00850 - hypothetical protein, at 882,257 to 882,385 _00850 MPMX19_00851: MPMX19_00851 - hypothetical protein, at 882,680 to 883,387 _00851 Position (kb) 882 883Strain fitness (log2 ratio) -2 -1 0 1 2at 881.283 kb on + strand, within MPMX19_00849at 881.283 kb on + strand, within MPMX19_00849at 881.284 kb on - strand, within MPMX19_00849at 881.284 kb on - strand, within MPMX19_00849at 881.284 kb on - strand, within MPMX19_00849at 881.737 kb on + strand, within MPMX19_00849at 881.738 kb on - strand, within MPMX19_00849at 881.738 kb on - strand, within MPMX19_00849at 881.738 kb on - strand, within MPMX19_00849at 881.738 kb on - strand, within MPMX19_00849at 881.982 kb on + strandat 881.982 kb on + strandat 881.982 kb on + strandat 881.983 kb on - strandat 881.983 kb on - strandat 881.983 kb on - strandat 881.983 kb on - strandat 881.983 kb on - strandat 881.989 kb on + strandat 881.989 kb on + strandat 881.989 kb on + strandat 881.989 kb on + strandat 881.989 kb on + strandat 881.989 kb on + strandat 881.989 kb on + strandat 881.989 kb on + strandat 881.989 kb on + strandat 881.989 kb on + strandat 881.989 kb on + strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.990 kb on - strandat 881.996 kb on + strandat 881.996 kb on + strandat 881.996 kb on + strandat 881.996 kb on + strandat 881.996 kb on + strandat 881.996 kb on + strandat 881.996 kb on + strandat 881.996 kb on + strandat 881.996 kb on + strandat 881.996 kb on + strandat 881.997 kb on - strandat 881.997 kb on - strandat 881.997 kb on - strandat 881.997 kb on - strandat 881.997 kb on - strandat 881.997 kb on - strandat 881.997 kb on - strandat 881.997 kb on - strandat 881.997 kb on - strandat 881.997 kb on - strandat 881.997 kb on - strandat 881.997 kb on - strandat 882.183 kb on + strandat 882.183 kb on + strandat 882.183 kb on + strandat 882.183 kb on + strandat 882.183 kb on + strandat 882.183 kb on + strandat 882.183 kb on + strandat 882.184 kb on - strandat 882.184 kb on - strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.230 kb on + strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.231 kb on - strandat 882.489 kb on - strandat 882.498 kb on + strandat 882.498 kb on + strandat 882.498 kb on + strandat 882.498 kb on + strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.499 kb on - strandat 882.512 kb on + strandat 882.513 kb on - strandat 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.851 kb on + strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.852 kb on - strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.878 kb on + strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 882.879 kb on - strand, within MPMX19_00851at 883.094 kb on + strand, within MPMX19_00851at 883.094 kb on + strand, within MPMX19_00851at 883.094 kb on + strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851at 883.095 kb on - strand, within MPMX19_00851

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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881,283 + MPMX19_00849 0.40 -1.1
881,283 + MPMX19_00849 0.40 -0.1
881,284 - MPMX19_00849 0.40 -0.6
881,284 - MPMX19_00849 0.40 -0.5
881,284 - MPMX19_00849 0.40 -0.4
881,737 + MPMX19_00849 0.85 -0.1
881,738 - MPMX19_00849 0.85 -0.1
881,738 - MPMX19_00849 0.85 -1.9
881,738 - MPMX19_00849 0.85 -1.1
881,738 - MPMX19_00849 0.85 -0.3
881,982 + -2.0
881,982 + +0.1
881,982 + -0.5
881,983 - -0.7
881,983 - +1.0
881,983 - +0.8
881,983 - -1.1
881,983 - +0.1
881,989 + -0.5
881,989 + -1.1
881,989 + -0.6
881,989 + -0.5
881,989 + -0.1
881,989 + +0.1
881,989 + -1.0
881,989 + +2.5
881,989 + +0.9
881,989 + +0.9
881,989 + +1.0
881,990 - +0.2
881,990 - -0.1
881,990 - -0.1
881,990 - +0.5
881,990 - -0.5
881,990 - -1.8
881,990 - -0.5
881,990 - -0.2
881,990 - -1.1
881,990 - -0.5
881,990 - -1.6
881,990 - -1.3
881,990 - +0.5
881,990 - -0.3
881,990 - +0.3
881,990 - -0.2
881,990 - +0.0
881,990 - -0.0
881,990 - -0.3
881,990 - -2.0
881,990 - -0.8
881,990 - -0.7
881,996 + +0.5
881,996 + -0.8
881,996 + -1.3
881,996 + +0.8
881,996 + +0.0
881,996 + -0.1
881,996 + -1.4
881,996 + +0.9
881,996 + -0.1
881,996 + -1.8
881,997 - -0.1
881,997 - +1.0
881,997 - +0.6
881,997 - -0.2
881,997 - -0.6
881,997 - -1.1
881,997 - -0.4
881,997 - -0.8
881,997 - +0.2
881,997 - -0.6
881,997 - -0.8
881,997 - -0.9
882,183 + +1.1
882,183 + -1.7
882,183 + +0.1
882,183 + +0.5
882,183 + +0.1
882,183 + +0.5
882,183 + -0.7
882,184 - -1.6
882,184 - -0.6
882,230 + -1.2
882,230 + +0.4
882,230 + -0.5
882,230 + -0.2
882,230 + -0.2
882,230 + -0.4
882,230 + -0.3
882,230 + -0.2
882,230 + +0.3
882,230 + +0.2
882,230 + -0.2
882,230 + -0.1
882,230 + -0.9
882,230 + -0.5
882,230 + -0.1
882,230 + +0.0
882,230 + +0.0
882,231 - -0.4
882,231 - +0.9
882,231 - -1.2
882,231 - -0.4
882,231 - -0.0
882,231 - +0.1
882,231 - -0.1
882,231 - +0.1
882,231 - +0.5
882,231 - -1.3
882,231 - +1.1
882,231 - -0.9
882,231 - -0.2
882,231 - -0.6
882,489 - -1.2
882,498 + -0.5
882,498 + -2.6
882,498 + -1.8
882,498 + +0.5
882,499 - -0.8
882,499 - +0.2
882,499 - +0.2
882,499 - +0.9
882,499 - +1.0
882,499 - +0.2
882,499 - +0.6
882,512 + -2.0
882,513 - -0.7
882,851 + MPMX19_00851 0.24 -1.6
882,851 + MPMX19_00851 0.24 +0.5
882,851 + MPMX19_00851 0.24 +1.1
882,851 + MPMX19_00851 0.24 -1.0
882,851 + MPMX19_00851 0.24 -0.1
882,851 + MPMX19_00851 0.24 -0.4
882,851 + MPMX19_00851 0.24 +0.0
882,851 + MPMX19_00851 0.24 +0.4
882,851 + MPMX19_00851 0.24 +1.0
882,851 + MPMX19_00851 0.24 +1.1
882,851 + MPMX19_00851 0.24 -1.2
882,851 + MPMX19_00851 0.24 -0.4
882,851 + MPMX19_00851 0.24 -1.1
882,851 + MPMX19_00851 0.24 -2.2
882,851 + MPMX19_00851 0.24 -0.6
882,852 - MPMX19_00851 0.24 +0.7
882,852 - MPMX19_00851 0.24 +0.1
882,852 - MPMX19_00851 0.24 +0.2
882,852 - MPMX19_00851 0.24 -0.3
882,852 - MPMX19_00851 0.24 -0.2
882,852 - MPMX19_00851 0.24 -0.7
882,878 + MPMX19_00851 0.28 +0.2
882,878 + MPMX19_00851 0.28 +0.5
882,878 + MPMX19_00851 0.28 -1.7
882,878 + MPMX19_00851 0.28 -1.3
882,878 + MPMX19_00851 0.28 -0.4
882,878 + MPMX19_00851 0.28 -1.3
882,878 + MPMX19_00851 0.28 -1.1
882,878 + MPMX19_00851 0.28 +0.9
882,878 + MPMX19_00851 0.28 +1.5
882,878 + MPMX19_00851 0.28 +1.4
882,879 - MPMX19_00851 0.28 -1.5
882,879 - MPMX19_00851 0.28 -0.0
882,879 - MPMX19_00851 0.28 -0.2
882,879 - MPMX19_00851 0.28 +0.4
882,879 - MPMX19_00851 0.28 +0.1
882,879 - MPMX19_00851 0.28 +0.1
882,879 - MPMX19_00851 0.28 -1.7
882,879 - MPMX19_00851 0.28 -1.2
882,879 - MPMX19_00851 0.28 -1.8
882,879 - MPMX19_00851 0.28 -0.9
883,094 + MPMX19_00851 0.58 +1.0
883,094 + MPMX19_00851 0.58 -1.4
883,094 + MPMX19_00851 0.58 -0.6
883,095 - MPMX19_00851 0.59 +0.5
883,095 - MPMX19_00851 0.59 +0.0
883,095 - MPMX19_00851 0.59 -0.9
883,095 - MPMX19_00851 0.59 +0.3
883,095 - MPMX19_00851 0.59 +0.0
883,095 - MPMX19_00851 0.59 +1.0

Or see this region's nucleotide sequence