Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00831 and MPMX19_00832 are separated by 37 nucleotides MPMX19_00832 and MPMX19_00833 are separated by 304 nucleotides
MPMX19_00831: MPMX19_00831 - GMP synthase [glutamine-hydrolyzing], at 862,138 to 863,706
_00831
MPMX19_00832: MPMX19_00832 - hypothetical protein, at 863,744 to 864,322
_00832
MPMX19_00833: MPMX19_00833 - Lipopolysaccharide export system permease protein LptG, at 864,627 to 865,721
_00833
Position (kb) 863
864
865 Strain fitness (log2 ratio) -2
-1
0
1
2 at 863.803 kb on - strand, within MPMX19_00832 at 863.877 kb on + strand, within MPMX19_00832 at 863.877 kb on + strand, within MPMX19_00832 at 863.877 kb on + strand, within MPMX19_00832 at 863.877 kb on + strand, within MPMX19_00832 at 863.878 kb on - strand, within MPMX19_00832 at 863.878 kb on - strand, within MPMX19_00832 at 863.878 kb on - strand, within MPMX19_00832 at 863.985 kb on + strand, within MPMX19_00832 at 864.003 kb on - strand, within MPMX19_00832 at 864.009 kb on + strand, within MPMX19_00832 at 864.231 kb on + strand, within MPMX19_00832 at 864.231 kb on + strand, within MPMX19_00832 at 864.231 kb on + strand, within MPMX19_00832 at 864.231 kb on + strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.232 kb on - strand, within MPMX19_00832 at 864.417 kb on + strand at 864.417 kb on + strand at 864.417 kb on + strand at 864.417 kb on + strand at 864.417 kb on + strand at 864.418 kb on - strand at 864.418 kb on - strand at 864.418 kb on - strand at 864.418 kb on - strand at 864.508 kb on + strand at 864.508 kb on + strand at 864.508 kb on + strand at 864.508 kb on + strand at 864.508 kb on + strand at 864.630 kb on + strand at 864.630 kb on + strand at 864.630 kb on + strand at 864.630 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 863,803 - MPMX19_00832 0.10 +1.0 863,877 + MPMX19_00832 0.23 -2.3 863,877 + MPMX19_00832 0.23 -0.2 863,877 + MPMX19_00832 0.23 -0.5 863,877 + MPMX19_00832 0.23 -2.2 863,878 - MPMX19_00832 0.23 +0.2 863,878 - MPMX19_00832 0.23 -1.3 863,878 - MPMX19_00832 0.23 -1.0 863,985 + MPMX19_00832 0.42 +0.2 864,003 - MPMX19_00832 0.45 -1.2 864,009 + MPMX19_00832 0.46 +0.2 864,231 + MPMX19_00832 0.84 +0.2 864,231 + MPMX19_00832 0.84 -0.2 864,231 + MPMX19_00832 0.84 +0.6 864,231 + MPMX19_00832 0.84 -0.6 864,232 - MPMX19_00832 0.84 -1.1 864,232 - MPMX19_00832 0.84 +0.2 864,232 - MPMX19_00832 0.84 -0.5 864,232 - MPMX19_00832 0.84 -2.1 864,232 - MPMX19_00832 0.84 +0.0 864,232 - MPMX19_00832 0.84 -0.2 864,417 + -0.3 864,417 + -0.1 864,417 + -1.5 864,417 + -0.4 864,417 + -2.0 864,418 - +1.8 864,418 - -1.5 864,418 - +0.6 864,418 - +0.9 864,508 + -0.9 864,508 + -1.9 864,508 + -0.2 864,508 + -0.6 864,508 + +0.4 864,630 + -0.7 864,630 + -0.5 864,630 + +0.0 864,630 + -1.2
Or see this region's nucleotide sequence