Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00788

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00787 and MPMX19_00788 are separated by 143 nucleotidesMPMX19_00788 and MPMX19_00789 are separated by 68 nucleotidesMPMX19_00789 and MPMX19_00790 are separated by 6 nucleotides MPMX19_00787: MPMX19_00787 - Sensor histidine kinase RcsC, at 808,576 to 809,934 _00787 MPMX19_00788: MPMX19_00788 - Chemotaxis protein CheY, at 810,078 to 810,476 _00788 MPMX19_00789: MPMX19_00789 - hypothetical protein, at 810,545 to 810,823 _00789 MPMX19_00790: MPMX19_00790 - hypothetical protein, at 810,830 to 811,438 _00790 Position (kb) 810 811Strain fitness (log2 ratio) -2 -1 0 1at 809.947 kb on + strandat 809.948 kb on - strandat 809.966 kb on + strandat 809.966 kb on + strandat 809.982 kb on + strandat 809.982 kb on + strandat 809.983 kb on - strandat 809.983 kb on - strandat 809.983 kb on - strandat 809.983 kb on - strandat 809.983 kb on - strandat 810.034 kb on + strandat 810.035 kb on - strandat 810.053 kb on - strandat 810.053 kb on - strandat 810.053 kb on - strandat 810.053 kb on - strandat 810.077 kb on + strandat 810.077 kb on + strandat 810.077 kb on + strandat 810.077 kb on + strandat 810.077 kb on + strandat 810.078 kb on - strandat 810.078 kb on - strandat 810.093 kb on + strandat 810.094 kb on - strandat 810.094 kb on - strandat 810.094 kb on - strandat 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.216 kb on + strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.217 kb on - strand, within MPMX19_00788at 810.692 kb on + strand, within MPMX19_00789at 810.692 kb on + strand, within MPMX19_00789at 810.692 kb on + strand, within MPMX19_00789at 810.692 kb on + strand, within MPMX19_00789at 810.692 kb on + strand, within MPMX19_00789at 810.692 kb on + strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.693 kb on - strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.701 kb on + strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.702 kb on - strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.704 kb on + strand, within MPMX19_00789at 810.705 kb on - strand, within MPMX19_00789at 810.705 kb on - strand, within MPMX19_00789at 810.705 kb on - strand, within MPMX19_00789at 810.705 kb on - strand, within MPMX19_00789at 810.705 kb on - strand, within MPMX19_00789at 810.831 kb on + strandat 810.831 kb on + strandat 810.969 kb on + strand, within MPMX19_00790at 810.970 kb on - strand, within MPMX19_00790at 810.970 kb on - strand, within MPMX19_00790at 811.443 kb on + strandat 811.444 kb on - strandat 811.444 kb on - strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.476 kb on - strandat 811.476 kb on - strandat 811.476 kb on - strandat 811.476 kb on - strandat 811.476 kb on - strandat 811.476 kb on - strandat 811.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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809,947 + -0.1
809,948 - +1.0
809,966 + +0.5
809,966 + +1.0
809,982 + -0.3
809,982 + +0.5
809,983 - -0.3
809,983 - -0.2
809,983 - -0.8
809,983 - -1.1
809,983 - +0.1
810,034 + -0.2
810,035 - +0.1
810,053 - -2.0
810,053 - -0.0
810,053 - +0.2
810,053 - +1.5
810,077 + +0.2
810,077 + +0.3
810,077 + -1.1
810,077 + +0.8
810,077 + -1.8
810,078 - -0.0
810,078 - -0.8
810,093 + -2.3
810,094 - -0.7
810,094 - -0.2
810,094 - -0.7
810,216 + MPMX19_00788 0.35 +1.7
810,216 + MPMX19_00788 0.35 +0.5
810,216 + MPMX19_00788 0.35 +0.7
810,216 + MPMX19_00788 0.35 +0.0
810,216 + MPMX19_00788 0.35 +0.9
810,216 + MPMX19_00788 0.35 +1.0
810,216 + MPMX19_00788 0.35 +0.9
810,216 + MPMX19_00788 0.35 +1.1
810,216 + MPMX19_00788 0.35 +0.9
810,216 + MPMX19_00788 0.35 -0.6
810,216 + MPMX19_00788 0.35 +0.8
810,216 + MPMX19_00788 0.35 -1.3
810,217 - MPMX19_00788 0.35 +0.5
810,217 - MPMX19_00788 0.35 -1.2
810,217 - MPMX19_00788 0.35 +0.1
810,217 - MPMX19_00788 0.35 -1.1
810,217 - MPMX19_00788 0.35 +0.2
810,217 - MPMX19_00788 0.35 +0.5
810,217 - MPMX19_00788 0.35 +0.0
810,217 - MPMX19_00788 0.35 +0.5
810,217 - MPMX19_00788 0.35 -0.4
810,217 - MPMX19_00788 0.35 -0.4
810,217 - MPMX19_00788 0.35 +0.2
810,692 + MPMX19_00789 0.53 -1.5
810,692 + MPMX19_00789 0.53 +0.8
810,692 + MPMX19_00789 0.53 +0.1
810,692 + MPMX19_00789 0.53 +0.0
810,692 + MPMX19_00789 0.53 -1.1
810,692 + MPMX19_00789 0.53 -1.3
810,693 - MPMX19_00789 0.53 -0.2
810,693 - MPMX19_00789 0.53 -1.7
810,693 - MPMX19_00789 0.53 -0.7
810,693 - MPMX19_00789 0.53 -0.5
810,693 - MPMX19_00789 0.53 -0.5
810,693 - MPMX19_00789 0.53 -0.2
810,693 - MPMX19_00789 0.53 +0.3
810,693 - MPMX19_00789 0.53 +0.1
810,693 - MPMX19_00789 0.53 -0.8
810,693 - MPMX19_00789 0.53 +1.7
810,693 - MPMX19_00789 0.53 +0.7
810,693 - MPMX19_00789 0.53 +0.4
810,693 - MPMX19_00789 0.53 -0.1
810,693 - MPMX19_00789 0.53 -0.5
810,693 - MPMX19_00789 0.53 -0.2
810,701 + MPMX19_00789 0.56 +0.3
810,701 + MPMX19_00789 0.56 +0.8
810,701 + MPMX19_00789 0.56 -0.9
810,701 + MPMX19_00789 0.56 +0.1
810,701 + MPMX19_00789 0.56 -1.3
810,701 + MPMX19_00789 0.56 -0.0
810,701 + MPMX19_00789 0.56 -0.8
810,701 + MPMX19_00789 0.56 +0.3
810,701 + MPMX19_00789 0.56 -1.8
810,701 + MPMX19_00789 0.56 -2.4
810,701 + MPMX19_00789 0.56 -0.6
810,701 + MPMX19_00789 0.56 -1.0
810,701 + MPMX19_00789 0.56 -2.4
810,701 + MPMX19_00789 0.56 -1.3
810,702 - MPMX19_00789 0.56 +0.2
810,702 - MPMX19_00789 0.56 +0.9
810,702 - MPMX19_00789 0.56 +1.5
810,702 - MPMX19_00789 0.56 -2.3
810,702 - MPMX19_00789 0.56 -0.4
810,702 - MPMX19_00789 0.56 +0.2
810,702 - MPMX19_00789 0.56 +0.6
810,702 - MPMX19_00789 0.56 -0.6
810,702 - MPMX19_00789 0.56 +1.5
810,702 - MPMX19_00789 0.56 +1.1
810,702 - MPMX19_00789 0.56 +0.5
810,702 - MPMX19_00789 0.56 +0.4
810,702 - MPMX19_00789 0.56 +0.8
810,702 - MPMX19_00789 0.56 -0.2
810,704 + MPMX19_00789 0.57 -0.1
810,704 + MPMX19_00789 0.57 +0.3
810,704 + MPMX19_00789 0.57 -0.7
810,704 + MPMX19_00789 0.57 +1.3
810,704 + MPMX19_00789 0.57 -1.1
810,704 + MPMX19_00789 0.57 +0.1
810,704 + MPMX19_00789 0.57 -0.8
810,704 + MPMX19_00789 0.57 -0.6
810,705 - MPMX19_00789 0.57 -0.5
810,705 - MPMX19_00789 0.57 -0.7
810,705 - MPMX19_00789 0.57 +1.0
810,705 - MPMX19_00789 0.57 -1.0
810,705 - MPMX19_00789 0.57 +0.2
810,831 + -0.1
810,831 + +1.0
810,969 + MPMX19_00790 0.23 -1.7
810,970 - MPMX19_00790 0.23 -0.4
810,970 - MPMX19_00790 0.23 +0.5
811,443 + +0.1
811,444 - -0.7
811,444 - -0.1
811,475 + -1.7
811,475 + -0.5
811,475 + +0.4
811,475 + -0.5
811,475 + -1.5
811,475 + +0.4
811,475 + +0.5
811,475 + -1.3
811,475 + +0.6
811,475 + -2.2
811,475 + -1.3
811,476 - +0.4
811,476 - -0.2
811,476 - +0.1
811,476 - -1.7
811,476 - +0.3
811,476 - -2.6
811,476 - +0.7

Or see this region's nucleotide sequence