Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00692 and MPMX19_00693 are separated by 243 nucleotides MPMX19_00693 and MPMX19_00694 are separated by 123 nucleotides MPMX19_00694 and MPMX19_00695 are separated by 172 nucleotides MPMX19_00695 and MPMX19_00696 are separated by 36 nucleotides
MPMX19_00692: MPMX19_00692 - hypothetical protein, at 714,800 to 715,108
_00692
MPMX19_00693: MPMX19_00693 - 5-formyltetrahydrofolate cyclo-ligase, at 715,352 to 715,942
_00693
MPMX19_00694: MPMX19_00694 - 2',3'-cyclic-nucleotide 2'-phosphodiesterase, at 716,066 to 716,890
_00694
MPMX19_00695: MPMX19_00695 - putative transcriptional regulatory protein, at 717,063 to 717,815
_00695
MPMX19_00696: MPMX19_00696 - Crossover junction endodeoxyribonuclease RuvC, at 717,852 to 718,940
_00696
Position (kb) 716
717 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.106 kb on + strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.107 kb on - strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.114 kb on + strand at 715.115 kb on - strand at 715.115 kb on - strand at 715.115 kb on - strand at 715.152 kb on + strand at 715.152 kb on + strand at 715.152 kb on + strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.153 kb on - strand at 715.181 kb on + strand at 715.181 kb on + strand at 715.181 kb on + strand at 715.182 kb on - strand at 715.182 kb on - strand at 715.182 kb on - strand at 715.216 kb on + strand at 715.217 kb on - strand at 715.217 kb on - strand at 715.253 kb on + strand at 715.254 kb on - strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.259 kb on + strand at 715.260 kb on - strand at 715.260 kb on - strand at 715.292 kb on + strand at 715.292 kb on + strand at 715.292 kb on + strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.293 kb on - strand at 715.511 kb on + strand, within MPMX19_00693 at 715.511 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.561 kb on + strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.562 kb on - strand, within MPMX19_00693 at 715.665 kb on - strand, within MPMX19_00693 at 715.763 kb on + strand, within MPMX19_00693 at 715.763 kb on + strand, within MPMX19_00693 at 715.763 kb on + strand, within MPMX19_00693 at 715.764 kb on - strand, within MPMX19_00693 at 715.775 kb on + strand, within MPMX19_00693 at 715.776 kb on - strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.778 kb on + strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.779 kb on - strand, within MPMX19_00693 at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.936 kb on + strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.937 kb on - strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.945 kb on + strand at 715.946 kb on - strand at 715.946 kb on - strand at 715.946 kb on - strand at 715.946 kb on - strand at 715.947 kb on + strand at 715.947 kb on + strand at 715.947 kb on + strand at 715.948 kb on - strand at 715.948 kb on - strand at 715.948 kb on - strand at 715.948 kb on - strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.961 kb on + strand at 715.962 kb on - strand at 715.962 kb on - strand at 715.962 kb on - strand at 715.962 kb on - strand at 715.964 kb on + strand at 715.964 kb on + strand at 715.965 kb on - strand at 715.981 kb on + strand at 715.981 kb on + strand at 715.982 kb on - strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.983 kb on + strand at 715.984 kb on - strand at 716.046 kb on + strand at 716.046 kb on + strand at 716.046 kb on + strand at 716.046 kb on + strand at 716.046 kb on + strand at 716.129 kb on - strand at 716.129 kb on - strand at 716.129 kb on - strand at 716.129 kb on - strand at 716.129 kb on - strand at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.269 kb on + strand, within MPMX19_00694 at 716.270 kb on - strand, within MPMX19_00694 at 716.270 kb on - strand, within MPMX19_00694 at 716.270 kb on - strand, within MPMX19_00694 at 716.336 kb on + strand, within MPMX19_00694 at 716.337 kb on - strand, within MPMX19_00694 at 716.363 kb on + strand, within MPMX19_00694 at 716.364 kb on - strand, within MPMX19_00694 at 716.364 kb on - strand, within MPMX19_00694 at 716.681 kb on + strand, within MPMX19_00694 at 716.681 kb on + strand, within MPMX19_00694 at 716.682 kb on - strand, within MPMX19_00694 at 716.888 kb on + strand at 716.888 kb on + strand at 716.888 kb on + strand at 716.888 kb on + strand at 716.888 kb on + strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.889 kb on - strand at 716.932 kb on + strand at 716.933 kb on - strand at 716.933 kb on - strand at 716.933 kb on - strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.943 kb on + strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 716.944 kb on - strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.000 kb on + strand at 717.309 kb on + strand, within MPMX19_00695 at 717.309 kb on + strand, within MPMX19_00695 at 717.309 kb on + strand, within MPMX19_00695 at 717.309 kb on + strand, within MPMX19_00695 at 717.324 kb on + strand, within MPMX19_00695 at 717.333 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695 at 717.423 kb on + strand, within MPMX19_00695
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 715,106 + -0.8 715,106 + +0.3 715,106 + +0.1 715,106 + +0.4 715,106 + -0.4 715,106 + +0.3 715,107 - +0.9 715,107 - -0.6 715,107 - +0.7 715,107 - -0.5 715,107 - +0.9 715,107 - -1.1 715,107 - -0.5 715,107 - +0.1 715,107 - -1.5 715,114 + +1.1 715,114 + -0.7 715,114 + -0.8 715,114 + +0.9 715,114 + +0.2 715,114 + +0.5 715,114 + +0.5 715,115 - +0.5 715,115 - +0.5 715,115 - -0.9 715,152 + +0.1 715,152 + +0.5 715,152 + -1.9 715,153 - -0.2 715,153 - -0.2 715,153 - -1.5 715,153 - -0.5 715,153 - -1.6 715,153 - +0.4 715,153 - -0.5 715,153 - -0.1 715,153 - -0.9 715,153 - +0.2 715,153 - -0.1 715,153 - -0.5 715,181 + +0.9 715,181 + +0.5 715,181 + -0.5 715,182 - +0.5 715,182 - +1.5 715,182 - -0.1 715,216 + -1.1 715,217 - +1.9 715,217 - -0.5 715,253 + -1.6 715,254 - +0.5 715,259 + -0.1 715,259 + +0.9 715,259 + -1.1 715,259 + -0.8 715,259 + +1.0 715,259 + +2.5 715,259 + +0.9 715,260 - +0.3 715,260 - -0.5 715,292 + -1.8 715,292 + -1.5 715,292 + -0.0 715,293 - -0.6 715,293 - -0.1 715,293 - -1.1 715,293 - -0.6 715,293 - -0.1 715,511 + MPMX19_00693 0.27 -0.3 715,511 + MPMX19_00693 0.27 +0.1 715,561 + MPMX19_00693 0.35 -1.2 715,561 + MPMX19_00693 0.35 -1.6 715,561 + MPMX19_00693 0.35 -1.2 715,561 + MPMX19_00693 0.35 +0.1 715,561 + MPMX19_00693 0.35 -0.4 715,561 + MPMX19_00693 0.35 +0.0 715,561 + MPMX19_00693 0.35 -1.6 715,561 + MPMX19_00693 0.35 -0.4 715,561 + MPMX19_00693 0.35 -2.6 715,562 - MPMX19_00693 0.36 -0.3 715,562 - MPMX19_00693 0.36 -0.2 715,562 - MPMX19_00693 0.36 -0.8 715,562 - MPMX19_00693 0.36 -0.3 715,562 - MPMX19_00693 0.36 -0.5 715,665 - MPMX19_00693 0.53 -0.3 715,763 + MPMX19_00693 0.70 -0.6 715,763 + MPMX19_00693 0.70 -1.3 715,763 + MPMX19_00693 0.70 +0.1 715,764 - MPMX19_00693 0.70 -0.3 715,775 + MPMX19_00693 0.72 -0.6 715,776 - MPMX19_00693 0.72 +0.4 715,778 + MPMX19_00693 0.72 -0.6 715,778 + MPMX19_00693 0.72 -0.8 715,778 + MPMX19_00693 0.72 -1.1 715,778 + MPMX19_00693 0.72 +0.5 715,778 + MPMX19_00693 0.72 -0.0 715,778 + MPMX19_00693 0.72 +1.0 715,778 + MPMX19_00693 0.72 +0.1 715,778 + MPMX19_00693 0.72 -0.3 715,778 + MPMX19_00693 0.72 +0.0 715,778 + MPMX19_00693 0.72 +0.2 715,779 - MPMX19_00693 0.72 -1.4 715,779 - MPMX19_00693 0.72 -1.3 715,779 - MPMX19_00693 0.72 +0.9 715,779 - MPMX19_00693 0.72 +0.0 715,779 - MPMX19_00693 0.72 +0.1 715,779 - MPMX19_00693 0.72 +1.6 715,936 + -1.8 715,936 + -0.5 715,936 + -1.3 715,936 + -0.1 715,936 + +0.3 715,936 + -1.4 715,936 + +0.7 715,936 + -1.3 715,936 + -0.0 715,936 + -0.4 715,936 + -0.1 715,936 + -0.2 715,936 + -0.4 715,936 + -0.7 715,936 + +0.3 715,936 + +0.5 715,936 + -0.3 715,936 + -0.8 715,937 - -0.5 715,937 - +1.8 715,937 - +1.1 715,937 - +0.4 715,937 - +0.9 715,937 - -1.6 715,937 - -1.5 715,937 - +1.9 715,937 - +0.2 715,937 - +0.5 715,937 - -0.5 715,937 - -0.1 715,945 + -0.8 715,945 + -1.1 715,945 + +0.1 715,945 + -1.6 715,945 + -0.8 715,945 + +0.1 715,945 + -0.9 715,945 + -0.9 715,945 + -0.1 715,945 + -0.9 715,946 - -0.1 715,946 - -0.5 715,946 - +2.9 715,946 - -0.5 715,947 + -0.1 715,947 + -2.1 715,947 + -1.1 715,948 - -2.4 715,948 - +0.2 715,948 - -1.1 715,948 - +0.2 715,961 + -1.1 715,961 + +0.5 715,961 + +0.4 715,961 + -0.1 715,961 + -0.4 715,961 + -0.7 715,962 - +0.5 715,962 - -0.4 715,962 - +0.3 715,962 - -0.8 715,964 + +0.2 715,964 + +0.6 715,965 - -0.8 715,981 + -0.5 715,981 + -0.9 715,982 - -0.3 715,983 + -0.3 715,983 + +0.2 715,983 + -1.6 715,983 + -1.8 715,983 + +0.3 715,983 + -0.2 715,983 + +0.2 715,983 + +0.1 715,983 + -1.0 715,983 + -0.1 715,984 - -0.8 716,046 + +0.5 716,046 + -1.1 716,046 + +0.1 716,046 + -1.8 716,046 + -0.8 716,129 - -1.3 716,129 - +1.1 716,129 - +0.8 716,129 - +0.8 716,129 - +0.3 716,269 + MPMX19_00694 0.25 +0.5 716,269 + MPMX19_00694 0.25 +0.9 716,269 + MPMX19_00694 0.25 +0.5 716,269 + MPMX19_00694 0.25 -0.8 716,269 + MPMX19_00694 0.25 +1.5 716,269 + MPMX19_00694 0.25 -0.1 716,270 - MPMX19_00694 0.25 -1.3 716,270 - MPMX19_00694 0.25 +0.2 716,270 - MPMX19_00694 0.25 -1.3 716,336 + MPMX19_00694 0.33 -1.1 716,337 - MPMX19_00694 0.33 -0.1 716,363 + MPMX19_00694 0.36 +0.3 716,364 - MPMX19_00694 0.36 -0.5 716,364 - MPMX19_00694 0.36 -0.6 716,681 + MPMX19_00694 0.75 +0.2 716,681 + MPMX19_00694 0.75 -0.8 716,682 - MPMX19_00694 0.75 -0.1 716,888 + -1.3 716,888 + +2.5 716,888 + +0.7 716,888 + -0.3 716,888 + -1.3 716,889 - -0.1 716,889 - +1.4 716,889 - +0.8 716,889 - +1.3 716,889 - +1.5 716,932 + +0.8 716,933 - -0.7 716,933 - +0.9 716,933 - -0.5 716,943 + +0.1 716,943 + +0.1 716,943 + +0.5 716,943 + -0.6 716,943 + +0.7 716,944 - -0.1 716,944 - -0.5 716,944 - +1.3 716,944 - -1.4 716,944 - -0.8 716,944 - -0.3 716,944 - -1.2 717,000 + -0.1 717,000 + -0.6 717,000 + -1.2 717,000 + -0.9 717,000 + -0.6 717,000 + -0.5 717,000 + -0.6 717,000 + -1.5 717,000 + -0.6 717,000 + -0.7 717,000 + +0.1 717,000 + -1.4 717,000 + -1.3 717,000 + -1.3 717,000 + -0.0 717,000 + -0.6 717,000 + -1.6 717,000 + +1.5 717,000 + +0.2 717,000 + -1.5 717,000 + -0.6 717,000 + -0.5 717,000 + -0.1 717,000 + +1.2 717,000 + +0.9 717,000 + -2.0 717,000 + +2.0 717,000 + -1.6 717,000 + +0.4 717,000 + -0.5 717,309 + MPMX19_00695 0.33 -1.6 717,309 + MPMX19_00695 0.33 +0.7 717,309 + MPMX19_00695 0.33 -1.6 717,309 + MPMX19_00695 0.33 -0.6 717,324 + MPMX19_00695 0.35 -0.6 717,333 + MPMX19_00695 0.36 -0.8 717,423 + MPMX19_00695 0.48 -0.6 717,423 + MPMX19_00695 0.48 -0.3 717,423 + MPMX19_00695 0.48 -0.2 717,423 + MPMX19_00695 0.48 +1.9
Or see this region's nucleotide sequence