Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00636

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00634 and MPMX19_00635 overlap by 4 nucleotidesMPMX19_00635 and MPMX19_00636 are separated by 63 nucleotidesMPMX19_00636 and MPMX19_00637 are separated by 58 nucleotides MPMX19_00634: MPMX19_00634 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 651,995 to 652,981 _00634 MPMX19_00635: MPMX19_00635 - 5,10-methylenetetrahydrofolate reductase, at 652,978 to 653,877 _00635 MPMX19_00636: MPMX19_00636 - hypothetical protein, at 653,941 to 654,414 _00636 MPMX19_00637: MPMX19_00637 - Methionine synthase, at 654,473 to 657,964 _00637 Position (kb) 653 654 655Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.113 kb on + strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.114 kb on - strand, within MPMX19_00635at 653.251 kb on + strand, within MPMX19_00635at 653.251 kb on + strand, within MPMX19_00635at 653.251 kb on + strand, within MPMX19_00635at 653.251 kb on + strand, within MPMX19_00635at 653.251 kb on + strand, within MPMX19_00635at 653.251 kb on + strand, within MPMX19_00635at 653.251 kb on + strand, within MPMX19_00635at 653.251 kb on + strand, within MPMX19_00635at 653.251 kb on + strand, within MPMX19_00635at 653.251 kb on + strand, within MPMX19_00635at 653.251 kb on + strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.252 kb on - strand, within MPMX19_00635at 653.329 kb on + strand, within MPMX19_00635at 653.329 kb on + strand, within MPMX19_00635at 653.329 kb on + strand, within MPMX19_00635at 653.329 kb on + strand, within MPMX19_00635at 653.351 kb on - strand, within MPMX19_00635at 653.351 kb on - strand, within MPMX19_00635at 653.356 kb on + strand, within MPMX19_00635at 653.356 kb on + strand, within MPMX19_00635at 653.356 kb on + strand, within MPMX19_00635at 653.356 kb on + strand, within MPMX19_00635at 653.356 kb on + strand, within MPMX19_00635at 653.356 kb on + strand, within MPMX19_00635at 653.356 kb on + strand, within MPMX19_00635at 653.356 kb on + strand, within MPMX19_00635at 653.356 kb on + strand, within MPMX19_00635at 653.356 kb on + strand, within MPMX19_00635at 653.356 kb on + strand, within MPMX19_00635at 653.357 kb on - strand, within MPMX19_00635at 653.357 kb on - strand, within MPMX19_00635at 653.357 kb on - strand, within MPMX19_00635at 653.357 kb on - strand, within MPMX19_00635at 653.357 kb on - strand, within MPMX19_00635at 653.357 kb on - strand, within MPMX19_00635at 653.357 kb on - strand, within MPMX19_00635at 653.357 kb on - strand, within MPMX19_00635at 653.536 kb on + strand, within MPMX19_00635at 653.536 kb on + strand, within MPMX19_00635at 653.536 kb on + strand, within MPMX19_00635at 653.536 kb on + strand, within MPMX19_00635at 653.536 kb on + strand, within MPMX19_00635at 653.537 kb on - strand, within MPMX19_00635at 653.537 kb on - strand, within MPMX19_00635at 653.537 kb on - strand, within MPMX19_00635at 653.537 kb on - strand, within MPMX19_00635at 653.537 kb on - strand, within MPMX19_00635at 653.537 kb on - strand, within MPMX19_00635at 653.537 kb on - strand, within MPMX19_00635at 653.537 kb on - strand, within MPMX19_00635at 653.537 kb on - strand, within MPMX19_00635at 653.788 kb on + strandat 653.788 kb on + strandat 653.788 kb on + strandat 653.788 kb on + strandat 653.788 kb on + strandat 653.788 kb on + strandat 653.789 kb on - strandat 653.789 kb on - strandat 653.789 kb on - strandat 653.789 kb on - strandat 653.789 kb on - strandat 653.789 kb on - strandat 653.789 kb on - strandat 653.789 kb on - strandat 653.875 kb on + strandat 653.875 kb on + strandat 653.876 kb on - strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.903 kb on + strandat 653.904 kb on - strandat 653.904 kb on - strandat 653.904 kb on - strandat 653.904 kb on - strandat 653.904 kb on - strandat 653.904 kb on - strandat 653.904 kb on - strandat 654.148 kb on + strand, within MPMX19_00636at 654.148 kb on + strand, within MPMX19_00636at 654.148 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.271 kb on + strand, within MPMX19_00636at 654.272 kb on - strand, within MPMX19_00636at 654.272 kb on - strand, within MPMX19_00636at 654.326 kb on + strand, within MPMX19_00636at 654.326 kb on + strand, within MPMX19_00636at 654.326 kb on + strand, within MPMX19_00636at 654.327 kb on - strand, within MPMX19_00636at 654.352 kb on + strand, within MPMX19_00636at 654.352 kb on + strand, within MPMX19_00636at 654.353 kb on - strand, within MPMX19_00636at 654.452 kb on + strandat 654.452 kb on + strandat 654.452 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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653,113 + MPMX19_00635 0.15 -1.2
653,113 + MPMX19_00635 0.15 -0.9
653,113 + MPMX19_00635 0.15 -0.1
653,113 + MPMX19_00635 0.15 -2.2
653,113 + MPMX19_00635 0.15 -1.1
653,113 + MPMX19_00635 0.15 -0.2
653,113 + MPMX19_00635 0.15 -1.3
653,113 + MPMX19_00635 0.15 -0.7
653,113 + MPMX19_00635 0.15 -2.1
653,113 + MPMX19_00635 0.15 -2.5
653,113 + MPMX19_00635 0.15 +0.4
653,113 + MPMX19_00635 0.15 -0.8
653,113 + MPMX19_00635 0.15 -1.7
653,113 + MPMX19_00635 0.15 +0.4
653,113 + MPMX19_00635 0.15 -0.8
653,113 + MPMX19_00635 0.15 -1.0
653,113 + MPMX19_00635 0.15 -1.5
653,114 - MPMX19_00635 0.15 -0.3
653,114 - MPMX19_00635 0.15 +0.2
653,114 - MPMX19_00635 0.15 +0.6
653,114 - MPMX19_00635 0.15 -0.1
653,114 - MPMX19_00635 0.15 -1.8
653,114 - MPMX19_00635 0.15 +0.3
653,114 - MPMX19_00635 0.15 -0.2
653,114 - MPMX19_00635 0.15 +0.9
653,114 - MPMX19_00635 0.15 +0.5
653,114 - MPMX19_00635 0.15 -1.5
653,114 - MPMX19_00635 0.15 -1.7
653,114 - MPMX19_00635 0.15 +0.5
653,114 - MPMX19_00635 0.15 +0.8
653,114 - MPMX19_00635 0.15 -1.0
653,114 - MPMX19_00635 0.15 -0.6
653,251 + MPMX19_00635 0.30 +1.2
653,251 + MPMX19_00635 0.30 -0.8
653,251 + MPMX19_00635 0.30 -0.5
653,251 + MPMX19_00635 0.30 -2.8
653,251 + MPMX19_00635 0.30 -0.6
653,251 + MPMX19_00635 0.30 -0.3
653,251 + MPMX19_00635 0.30 -0.9
653,251 + MPMX19_00635 0.30 -1.3
653,251 + MPMX19_00635 0.30 -0.3
653,251 + MPMX19_00635 0.30 -0.5
653,251 + MPMX19_00635 0.30 -0.8
653,252 - MPMX19_00635 0.30 -0.8
653,252 - MPMX19_00635 0.30 -1.8
653,252 - MPMX19_00635 0.30 -0.2
653,252 - MPMX19_00635 0.30 +0.1
653,252 - MPMX19_00635 0.30 -0.6
653,252 - MPMX19_00635 0.30 -0.5
653,252 - MPMX19_00635 0.30 -0.6
653,252 - MPMX19_00635 0.30 -0.8
653,252 - MPMX19_00635 0.30 -1.5
653,252 - MPMX19_00635 0.30 -0.1
653,252 - MPMX19_00635 0.30 -1.3
653,252 - MPMX19_00635 0.30 -0.3
653,252 - MPMX19_00635 0.30 +0.7
653,252 - MPMX19_00635 0.30 -2.1
653,329 + MPMX19_00635 0.39 -2.8
653,329 + MPMX19_00635 0.39 +0.2
653,329 + MPMX19_00635 0.39 -0.1
653,329 + MPMX19_00635 0.39 -0.2
653,351 - MPMX19_00635 0.41 -0.6
653,351 - MPMX19_00635 0.41 -0.9
653,356 + MPMX19_00635 0.42 +1.3
653,356 + MPMX19_00635 0.42 -0.1
653,356 + MPMX19_00635 0.42 -0.3
653,356 + MPMX19_00635 0.42 -1.3
653,356 + MPMX19_00635 0.42 -0.2
653,356 + MPMX19_00635 0.42 -1.5
653,356 + MPMX19_00635 0.42 -0.1
653,356 + MPMX19_00635 0.42 +2.1
653,356 + MPMX19_00635 0.42 +0.9
653,356 + MPMX19_00635 0.42 -0.7
653,356 + MPMX19_00635 0.42 -0.6
653,357 - MPMX19_00635 0.42 -0.6
653,357 - MPMX19_00635 0.42 +0.4
653,357 - MPMX19_00635 0.42 -1.1
653,357 - MPMX19_00635 0.42 -0.4
653,357 - MPMX19_00635 0.42 -0.9
653,357 - MPMX19_00635 0.42 -2.1
653,357 - MPMX19_00635 0.42 -0.8
653,357 - MPMX19_00635 0.42 +0.5
653,536 + MPMX19_00635 0.62 -0.8
653,536 + MPMX19_00635 0.62 -0.8
653,536 + MPMX19_00635 0.62 +0.3
653,536 + MPMX19_00635 0.62 -0.3
653,536 + MPMX19_00635 0.62 -0.2
653,537 - MPMX19_00635 0.62 -1.2
653,537 - MPMX19_00635 0.62 -0.1
653,537 - MPMX19_00635 0.62 -0.8
653,537 - MPMX19_00635 0.62 -0.4
653,537 - MPMX19_00635 0.62 +0.9
653,537 - MPMX19_00635 0.62 -1.5
653,537 - MPMX19_00635 0.62 +1.2
653,537 - MPMX19_00635 0.62 +0.5
653,537 - MPMX19_00635 0.62 -0.5
653,788 + -1.5
653,788 + +0.2
653,788 + -2.5
653,788 + -0.7
653,788 + -0.7
653,788 + -1.3
653,789 - -1.1
653,789 - -0.9
653,789 - +1.1
653,789 - -1.9
653,789 - -0.6
653,789 - +0.6
653,789 - -0.1
653,789 - -0.5
653,875 + +0.9
653,875 + +1.4
653,876 - +0.4
653,903 + +1.2
653,903 + -0.6
653,903 + +0.3
653,903 + -1.5
653,903 + -0.1
653,903 + +0.2
653,903 + -0.2
653,903 + -1.6
653,903 + -0.3
653,903 + -0.1
653,903 + +0.4
653,903 + -0.2
653,903 + -0.9
653,903 + +0.5
653,903 + -0.3
653,903 + -0.2
653,904 - -0.1
653,904 - +1.5
653,904 - -1.6
653,904 - -0.1
653,904 - -1.3
653,904 - -0.4
653,904 - +0.7
654,148 + MPMX19_00636 0.44 +0.3
654,148 + MPMX19_00636 0.44 +0.8
654,148 + MPMX19_00636 0.44 -0.1
654,271 + MPMX19_00636 0.70 +1.4
654,271 + MPMX19_00636 0.70 -0.6
654,271 + MPMX19_00636 0.70 -0.2
654,271 + MPMX19_00636 0.70 +0.0
654,271 + MPMX19_00636 0.70 +0.1
654,271 + MPMX19_00636 0.70 +0.0
654,271 + MPMX19_00636 0.70 +1.7
654,271 + MPMX19_00636 0.70 +0.8
654,271 + MPMX19_00636 0.70 -1.1
654,271 + MPMX19_00636 0.70 +0.0
654,271 + MPMX19_00636 0.70 -1.3
654,271 + MPMX19_00636 0.70 -0.6
654,272 - MPMX19_00636 0.70 -0.6
654,272 - MPMX19_00636 0.70 +0.5
654,326 + MPMX19_00636 0.81 +0.2
654,326 + MPMX19_00636 0.81 +0.1
654,326 + MPMX19_00636 0.81 +0.5
654,327 - MPMX19_00636 0.81 -0.5
654,352 + MPMX19_00636 0.87 +1.3
654,352 + MPMX19_00636 0.87 -0.6
654,353 - MPMX19_00636 0.87 -0.1
654,452 + +0.9
654,452 + -0.6
654,452 + +0.5

Or see this region's nucleotide sequence