Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00616

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00615 and MPMX19_00616 are separated by 317 nucleotidesMPMX19_00616 and MPMX19_00617 overlap by 17 nucleotidesMPMX19_00617 and MPMX19_00618 overlap by 1 nucleotides MPMX19_00615: MPMX19_00615 - hypothetical protein, at 631,006 to 632,703 _00615 MPMX19_00616: MPMX19_00616 - hypothetical protein, at 633,021 to 633,386 _00616 MPMX19_00617: MPMX19_00617 - Lipoyl synthase, at 633,370 to 634,290 _00617 MPMX19_00618: MPMX19_00618 - Sorbitol dehydrogenase, at 634,290 to 635,420 _00618 Position (kb) 633 634Strain fitness (log2 ratio) -2 -1 0 1at 632.707 kb on + strandat 632.896 kb on + strandat 632.896 kb on + strandat 632.897 kb on - strandat 632.897 kb on - strandat 632.897 kb on - strandat 632.897 kb on - strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.938 kb on + strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.939 kb on - strandat 632.998 kb on + strandat 632.998 kb on + strandat 632.998 kb on + strandat 632.998 kb on + strandat 632.998 kb on + strandat 632.999 kb on - strandat 632.999 kb on - strandat 632.999 kb on - strandat 633.150 kb on + strand, within MPMX19_00616at 633.150 kb on + strand, within MPMX19_00616at 633.150 kb on + strand, within MPMX19_00616at 633.150 kb on + strand, within MPMX19_00616at 633.150 kb on + strand, within MPMX19_00616at 633.151 kb on - strand, within MPMX19_00616at 633.151 kb on - strand, within MPMX19_00616at 633.151 kb on - strand, within MPMX19_00616at 633.151 kb on - strand, within MPMX19_00616at 633.153 kb on + strand, within MPMX19_00616at 633.153 kb on + strand, within MPMX19_00616at 633.153 kb on + strand, within MPMX19_00616at 633.153 kb on + strand, within MPMX19_00616at 633.154 kb on - strand, within MPMX19_00616at 633.154 kb on - strand, within MPMX19_00616at 633.154 kb on - strand, within MPMX19_00616at 633.154 kb on - strand, within MPMX19_00616at 633.154 kb on - strand, within MPMX19_00616at 633.160 kb on - strand, within MPMX19_00616at 633.231 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.258 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.306 kb on + strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.307 kb on - strand, within MPMX19_00616at 633.384 kb on + strandat 633.384 kb on + strandat 633.384 kb on + strandat 633.385 kb on - strandat 633.385 kb on - strandat 633.498 kb on - strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.563 kb on + strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617at 633.564 kb on - strand, within MPMX19_00617at 633.722 kb on + strand, within MPMX19_00617at 633.722 kb on + strand, within MPMX19_00617at 633.722 kb on + strand, within MPMX19_00617at 633.722 kb on + strand, within MPMX19_00617at 633.722 kb on - strand, within MPMX19_00617at 633.723 kb on - strand, within MPMX19_00617at 633.723 kb on - strand, within MPMX19_00617at 633.723 kb on - strand, within MPMX19_00617at 633.723 kb on - strand, within MPMX19_00617at 633.723 kb on - strand, within MPMX19_00617at 633.725 kb on + strand, within MPMX19_00617at 633.725 kb on + strand, within MPMX19_00617at 633.725 kb on + strand, within MPMX19_00617at 633.725 kb on + strand, within MPMX19_00617at 633.752 kb on + strand, within MPMX19_00617at 633.752 kb on + strand, within MPMX19_00617at 633.752 kb on + strand, within MPMX19_00617at 633.752 kb on + strand, within MPMX19_00617at 633.752 kb on + strand, within MPMX19_00617at 633.752 kb on + strand, within MPMX19_00617at 633.752 kb on + strand, within MPMX19_00617at 633.753 kb on - strand, within MPMX19_00617at 633.753 kb on - strand, within MPMX19_00617at 633.753 kb on - strand, within MPMX19_00617at 633.753 kb on - strand, within MPMX19_00617at 633.753 kb on - strand, within MPMX19_00617at 633.753 kb on - strand, within MPMX19_00617at 633.785 kb on + strand, within MPMX19_00617at 633.785 kb on + strand, within MPMX19_00617at 633.785 kb on + strand, within MPMX19_00617at 633.785 kb on + strand, within MPMX19_00617at 633.785 kb on + strand, within MPMX19_00617at 633.785 kb on + strand, within MPMX19_00617at 633.785 kb on + strand, within MPMX19_00617at 633.785 kb on + strand, within MPMX19_00617at 633.785 kb on + strand, within MPMX19_00617at 633.786 kb on - strand, within MPMX19_00617at 633.786 kb on - strand, within MPMX19_00617at 633.786 kb on - strand, within MPMX19_00617at 633.786 kb on - strand, within MPMX19_00617at 633.786 kb on - strand, within MPMX19_00617at 633.786 kb on - strand, within MPMX19_00617at 633.786 kb on - strand, within MPMX19_00617at 633.786 kb on - strand, within MPMX19_00617at 633.786 kb on - strand, within MPMX19_00617

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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632,707 + +0.2
632,896 + +0.3
632,896 + -0.1
632,897 - +1.0
632,897 - -0.5
632,897 - -0.0
632,897 - -0.8
632,938 + -0.4
632,938 + -1.3
632,938 + -2.6
632,938 + -0.2
632,938 + -1.5
632,938 + -0.1
632,938 + -0.1
632,938 + -1.0
632,938 + +0.5
632,938 + +0.5
632,938 + -0.5
632,938 + -1.7
632,938 + -0.9
632,938 + -1.7
632,938 + +1.5
632,938 + -0.1
632,938 + -1.3
632,938 + -1.3
632,938 + +0.3
632,939 - -1.1
632,939 - -0.5
632,939 - -0.3
632,939 - -0.8
632,939 - +0.5
632,939 - +0.5
632,939 - -1.0
632,939 - -0.5
632,939 - -1.4
632,939 - -0.5
632,939 - +0.3
632,939 - -0.2
632,939 - -0.5
632,939 - -0.2
632,998 + -0.2
632,998 + -0.7
632,998 + +0.5
632,998 + -0.3
632,998 + -0.6
632,999 - -1.5
632,999 - -0.3
632,999 - -0.9
633,150 + MPMX19_00616 0.35 -0.0
633,150 + MPMX19_00616 0.35 +0.2
633,150 + MPMX19_00616 0.35 -1.1
633,150 + MPMX19_00616 0.35 -0.2
633,150 + MPMX19_00616 0.35 +0.9
633,151 - MPMX19_00616 0.36 -0.2
633,151 - MPMX19_00616 0.36 -1.0
633,151 - MPMX19_00616 0.36 -0.8
633,151 - MPMX19_00616 0.36 -0.8
633,153 + MPMX19_00616 0.36 -1.3
633,153 + MPMX19_00616 0.36 -0.3
633,153 + MPMX19_00616 0.36 +0.5
633,153 + MPMX19_00616 0.36 -0.6
633,154 - MPMX19_00616 0.36 -0.6
633,154 - MPMX19_00616 0.36 +1.1
633,154 - MPMX19_00616 0.36 -1.0
633,154 - MPMX19_00616 0.36 -0.8
633,154 - MPMX19_00616 0.36 -1.9
633,160 - MPMX19_00616 0.38 -1.5
633,231 + MPMX19_00616 0.57 +0.8
633,258 + MPMX19_00616 0.65 -0.0
633,258 + MPMX19_00616 0.65 -1.2
633,258 + MPMX19_00616 0.65 -0.5
633,258 + MPMX19_00616 0.65 -0.2
633,258 + MPMX19_00616 0.65 -0.4
633,258 + MPMX19_00616 0.65 -0.4
633,258 + MPMX19_00616 0.65 +0.5
633,306 + MPMX19_00616 0.78 -1.3
633,306 + MPMX19_00616 0.78 -0.5
633,306 + MPMX19_00616 0.78 -1.9
633,306 + MPMX19_00616 0.78 -1.4
633,306 + MPMX19_00616 0.78 +1.1
633,306 + MPMX19_00616 0.78 -0.5
633,306 + MPMX19_00616 0.78 -1.6
633,306 + MPMX19_00616 0.78 -2.7
633,306 + MPMX19_00616 0.78 -0.7
633,306 + MPMX19_00616 0.78 -0.3
633,306 + MPMX19_00616 0.78 -0.5
633,306 + MPMX19_00616 0.78 -0.1
633,306 + MPMX19_00616 0.78 +0.3
633,307 - MPMX19_00616 0.78 -0.2
633,307 - MPMX19_00616 0.78 +0.3
633,307 - MPMX19_00616 0.78 +0.3
633,307 - MPMX19_00616 0.78 -1.2
633,307 - MPMX19_00616 0.78 -0.8
633,307 - MPMX19_00616 0.78 -0.5
633,307 - MPMX19_00616 0.78 +0.2
633,307 - MPMX19_00616 0.78 -0.3
633,307 - MPMX19_00616 0.78 -0.5
633,307 - MPMX19_00616 0.78 +0.0
633,307 - MPMX19_00616 0.78 -1.5
633,307 - MPMX19_00616 0.78 -0.4
633,307 - MPMX19_00616 0.78 +0.7
633,307 - MPMX19_00616 0.78 -1.9
633,384 + -1.6
633,384 + -1.3
633,384 + -0.6
633,385 - -0.7
633,385 - -0.9
633,498 - MPMX19_00617 0.14 -1.0
633,563 + MPMX19_00617 0.21 +0.2
633,563 + MPMX19_00617 0.21 -0.3
633,563 + MPMX19_00617 0.21 +0.1
633,563 + MPMX19_00617 0.21 -1.6
633,563 + MPMX19_00617 0.21 +1.2
633,563 + MPMX19_00617 0.21 -1.1
633,564 - MPMX19_00617 0.21 -0.5
633,564 - MPMX19_00617 0.21 -1.5
633,564 - MPMX19_00617 0.21 +0.4
633,564 - MPMX19_00617 0.21 -0.8
633,564 - MPMX19_00617 0.21 -1.0
633,564 - MPMX19_00617 0.21 +1.2
633,722 + MPMX19_00617 0.38 -0.5
633,722 + MPMX19_00617 0.38 +0.3
633,722 + MPMX19_00617 0.38 -1.5
633,722 + MPMX19_00617 0.38 -0.2
633,722 - MPMX19_00617 0.38 -0.3
633,723 - MPMX19_00617 0.38 +0.0
633,723 - MPMX19_00617 0.38 +0.4
633,723 - MPMX19_00617 0.38 -0.5
633,723 - MPMX19_00617 0.38 -0.9
633,723 - MPMX19_00617 0.38 -0.0
633,725 + MPMX19_00617 0.39 +0.1
633,725 + MPMX19_00617 0.39 -1.3
633,725 + MPMX19_00617 0.39 -0.6
633,725 + MPMX19_00617 0.39 -0.5
633,752 + MPMX19_00617 0.41 -0.9
633,752 + MPMX19_00617 0.41 -0.3
633,752 + MPMX19_00617 0.41 -0.3
633,752 + MPMX19_00617 0.41 +1.1
633,752 + MPMX19_00617 0.41 -0.3
633,752 + MPMX19_00617 0.41 +0.8
633,752 + MPMX19_00617 0.41 -0.6
633,753 - MPMX19_00617 0.42 -1.3
633,753 - MPMX19_00617 0.42 -0.3
633,753 - MPMX19_00617 0.42 -0.4
633,753 - MPMX19_00617 0.42 +1.2
633,753 - MPMX19_00617 0.42 +1.1
633,753 - MPMX19_00617 0.42 -0.2
633,785 + MPMX19_00617 0.45 +0.5
633,785 + MPMX19_00617 0.45 -0.5
633,785 + MPMX19_00617 0.45 -0.2
633,785 + MPMX19_00617 0.45 -0.0
633,785 + MPMX19_00617 0.45 -0.4
633,785 + MPMX19_00617 0.45 +0.2
633,785 + MPMX19_00617 0.45 +1.7
633,785 + MPMX19_00617 0.45 -1.5
633,785 + MPMX19_00617 0.45 +0.2
633,786 - MPMX19_00617 0.45 -1.2
633,786 - MPMX19_00617 0.45 +0.1
633,786 - MPMX19_00617 0.45 +1.1
633,786 - MPMX19_00617 0.45 +0.2
633,786 - MPMX19_00617 0.45 +0.7
633,786 - MPMX19_00617 0.45 -1.0
633,786 - MPMX19_00617 0.45 -0.6
633,786 - MPMX19_00617 0.45 -0.0
633,786 - MPMX19_00617 0.45 -1.8

Or see this region's nucleotide sequence