Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00609

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00607 and MPMX19_00608 are separated by 105 nucleotidesMPMX19_00608 and MPMX19_00609 are separated by 526 nucleotidesMPMX19_00609 and MPMX19_00610 are separated by 33 nucleotides MPMX19_00607: MPMX19_00607 - 3-isopropylmalate dehydrogenase, at 621,048 to 622,163 _00607 MPMX19_00608: MPMX19_00608 - hypothetical protein, at 622,269 to 622,559 _00608 MPMX19_00609: MPMX19_00609 - Chemotaxis protein CheY, at 623,086 to 623,481 _00609 MPMX19_00610: MPMX19_00610 - hypothetical protein, at 623,515 to 624,939 _00610 Position (kb) 623 624Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 622.245 kb on + strandat 622.245 kb on + strandat 622.246 kb on - strandat 622.246 kb on - strandat 622.461 kb on + strand, within MPMX19_00608at 622.535 kb on + strandat 622.535 kb on + strandat 622.535 kb on + strandat 622.535 kb on + strandat 622.535 kb on + strandat 622.536 kb on - strandat 622.536 kb on - strandat 622.536 kb on - strandat 622.536 kb on - strandat 622.628 kb on + strandat 622.629 kb on - strandat 622.629 kb on - strandat 622.629 kb on - strandat 622.629 kb on - strandat 622.630 kb on + strandat 622.630 kb on + strandat 622.630 kb on + strandat 622.630 kb on + strandat 622.644 kb on - strandat 622.780 kb on - strandat 622.780 kb on - strandat 622.839 kb on + strandat 622.840 kb on - strandat 622.859 kb on - strandat 622.861 kb on - strandat 622.861 kb on - strandat 622.956 kb on + strandat 622.995 kb on + strandat 622.996 kb on - strandat 622.996 kb on - strandat 622.996 kb on - strandat 622.997 kb on + strandat 622.998 kb on - strandat 622.998 kb on - strandat 623.000 kb on + strandat 623.000 kb on + strandat 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.427 kb on + strand, within MPMX19_00609at 623.428 kb on - strand, within MPMX19_00609at 623.428 kb on - strand, within MPMX19_00609at 623.428 kb on - strand, within MPMX19_00609at 623.428 kb on - strand, within MPMX19_00609at 623.428 kb on - strand, within MPMX19_00609at 623.512 kb on - strandat 623.606 kb on + strandat 623.606 kb on + strandat 623.607 kb on - strandat 623.885 kb on + strand, within MPMX19_00610at 623.885 kb on + strand, within MPMX19_00610at 623.885 kb on + strand, within MPMX19_00610at 623.885 kb on + strand, within MPMX19_00610at 623.885 kb on + strand, within MPMX19_00610at 623.886 kb on - strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.259 kb on + strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.260 kb on - strand, within MPMX19_00610at 624.261 kb on + strand, within MPMX19_00610at 624.261 kb on + strand, within MPMX19_00610at 624.261 kb on + strand, within MPMX19_00610at 624.261 kb on + strand, within MPMX19_00610at 624.261 kb on + strand, within MPMX19_00610at 624.261 kb on + strand, within MPMX19_00610at 624.261 kb on + strand, within MPMX19_00610at 624.261 kb on + strand, within MPMX19_00610at 624.261 kb on + strand, within MPMX19_00610at 624.261 kb on + strand, within MPMX19_00610at 624.262 kb on - strand, within MPMX19_00610at 624.262 kb on - strand, within MPMX19_00610at 624.262 kb on - strand, within MPMX19_00610at 624.262 kb on - strand, within MPMX19_00610at 624.262 kb on - strand, within MPMX19_00610at 624.262 kb on - strand, within MPMX19_00610at 624.262 kb on - strand, within MPMX19_00610at 624.262 kb on - strand, within MPMX19_00610at 624.275 kb on + strand, within MPMX19_00610at 624.275 kb on + strand, within MPMX19_00610at 624.276 kb on - strand, within MPMX19_00610

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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622,245 + -1.6
622,245 + +0.2
622,246 - -1.2
622,246 - +0.1
622,461 + MPMX19_00608 0.66 +0.0
622,535 + -1.0
622,535 + -0.2
622,535 + -0.7
622,535 + +0.8
622,535 + -0.5
622,536 - -0.1
622,536 - +0.8
622,536 - -0.0
622,536 - +0.2
622,628 + -0.3
622,629 - +0.0
622,629 - +0.4
622,629 - -0.3
622,629 - -1.0
622,630 + -0.3
622,630 + +1.4
622,630 + -1.0
622,630 + -1.2
622,644 - +0.1
622,780 - +0.3
622,780 - -0.5
622,839 + +1.1
622,840 - -1.5
622,859 - -0.2
622,861 - -2.2
622,861 - -0.6
622,956 + +0.5
622,995 + -1.8
622,996 - -0.0
622,996 - -0.3
622,996 - -1.5
622,997 + +0.4
622,998 - +0.8
622,998 - -0.2
623,000 + -1.8
623,000 + +0.3
623,427 + MPMX19_00609 0.86 -1.6
623,427 + MPMX19_00609 0.86 -1.4
623,427 + MPMX19_00609 0.86 -1.6
623,427 + MPMX19_00609 0.86 -1.8
623,427 + MPMX19_00609 0.86 -0.0
623,427 + MPMX19_00609 0.86 -1.4
623,427 + MPMX19_00609 0.86 -0.5
623,427 + MPMX19_00609 0.86 -1.6
623,428 - MPMX19_00609 0.86 +0.4
623,428 - MPMX19_00609 0.86 -0.3
623,428 - MPMX19_00609 0.86 +0.2
623,428 - MPMX19_00609 0.86 +2.0
623,428 - MPMX19_00609 0.86 -2.2
623,512 - -0.0
623,606 + -0.3
623,606 + +0.1
623,607 - +0.2
623,885 + MPMX19_00610 0.26 -1.0
623,885 + MPMX19_00610 0.26 -1.0
623,885 + MPMX19_00610 0.26 -0.1
623,885 + MPMX19_00610 0.26 -0.0
623,885 + MPMX19_00610 0.26 -0.4
623,886 - MPMX19_00610 0.26 -1.5
624,259 + MPMX19_00610 0.52 -0.4
624,259 + MPMX19_00610 0.52 -1.0
624,259 + MPMX19_00610 0.52 -0.8
624,259 + MPMX19_00610 0.52 -1.9
624,259 + MPMX19_00610 0.52 +0.9
624,259 + MPMX19_00610 0.52 -0.2
624,259 + MPMX19_00610 0.52 -0.5
624,259 + MPMX19_00610 0.52 +0.1
624,259 + MPMX19_00610 0.52 +0.4
624,259 + MPMX19_00610 0.52 -0.6
624,259 + MPMX19_00610 0.52 +1.5
624,259 + MPMX19_00610 0.52 -0.4
624,259 + MPMX19_00610 0.52 -0.5
624,259 + MPMX19_00610 0.52 -0.8
624,259 + MPMX19_00610 0.52 +1.2
624,259 + MPMX19_00610 0.52 +0.3
624,259 + MPMX19_00610 0.52 -0.5
624,259 + MPMX19_00610 0.52 +0.2
624,259 + MPMX19_00610 0.52 +0.3
624,259 + MPMX19_00610 0.52 +0.5
624,259 + MPMX19_00610 0.52 +0.3
624,259 + MPMX19_00610 0.52 -0.6
624,259 + MPMX19_00610 0.52 +1.5
624,259 + MPMX19_00610 0.52 +0.3
624,259 + MPMX19_00610 0.52 -1.2
624,259 + MPMX19_00610 0.52 +0.7
624,259 + MPMX19_00610 0.52 -0.6
624,259 + MPMX19_00610 0.52 +0.0
624,259 + MPMX19_00610 0.52 -1.3
624,259 + MPMX19_00610 0.52 -1.0
624,259 + MPMX19_00610 0.52 +0.2
624,259 + MPMX19_00610 0.52 -1.3
624,259 + MPMX19_00610 0.52 -2.3
624,259 + MPMX19_00610 0.52 -0.3
624,259 + MPMX19_00610 0.52 -0.4
624,259 + MPMX19_00610 0.52 -1.6
624,259 + MPMX19_00610 0.52 +1.1
624,260 - MPMX19_00610 0.52 +0.7
624,260 - MPMX19_00610 0.52 -1.3
624,260 - MPMX19_00610 0.52 +0.5
624,260 - MPMX19_00610 0.52 -0.2
624,260 - MPMX19_00610 0.52 -0.9
624,260 - MPMX19_00610 0.52 -0.6
624,260 - MPMX19_00610 0.52 +0.5
624,260 - MPMX19_00610 0.52 -2.0
624,260 - MPMX19_00610 0.52 +0.7
624,260 - MPMX19_00610 0.52 +0.2
624,260 - MPMX19_00610 0.52 -0.5
624,260 - MPMX19_00610 0.52 -0.6
624,260 - MPMX19_00610 0.52 -0.0
624,260 - MPMX19_00610 0.52 +0.1
624,260 - MPMX19_00610 0.52 -0.5
624,260 - MPMX19_00610 0.52 -0.8
624,260 - MPMX19_00610 0.52 -1.0
624,260 - MPMX19_00610 0.52 -0.2
624,260 - MPMX19_00610 0.52 -2.4
624,260 - MPMX19_00610 0.52 -1.3
624,260 - MPMX19_00610 0.52 -0.9
624,260 - MPMX19_00610 0.52 -0.0
624,260 - MPMX19_00610 0.52 -0.0
624,260 - MPMX19_00610 0.52 +0.6
624,260 - MPMX19_00610 0.52 +0.6
624,260 - MPMX19_00610 0.52 -1.0
624,260 - MPMX19_00610 0.52 +0.5
624,260 - MPMX19_00610 0.52 -0.2
624,260 - MPMX19_00610 0.52 +0.1
624,260 - MPMX19_00610 0.52 -0.3
624,260 - MPMX19_00610 0.52 -0.2
624,260 - MPMX19_00610 0.52 -0.8
624,260 - MPMX19_00610 0.52 -0.6
624,260 - MPMX19_00610 0.52 -0.5
624,260 - MPMX19_00610 0.52 -0.5
624,260 - MPMX19_00610 0.52 +0.9
624,260 - MPMX19_00610 0.52 -0.7
624,261 + MPMX19_00610 0.52 -1.0
624,261 + MPMX19_00610 0.52 -0.5
624,261 + MPMX19_00610 0.52 -0.5
624,261 + MPMX19_00610 0.52 -0.3
624,261 + MPMX19_00610 0.52 +0.4
624,261 + MPMX19_00610 0.52 -0.3
624,261 + MPMX19_00610 0.52 +1.5
624,261 + MPMX19_00610 0.52 +1.5
624,261 + MPMX19_00610 0.52 -1.0
624,261 + MPMX19_00610 0.52 +0.3
624,262 - MPMX19_00610 0.52 -3.0
624,262 - MPMX19_00610 0.52 +0.1
624,262 - MPMX19_00610 0.52 -1.5
624,262 - MPMX19_00610 0.52 +0.1
624,262 - MPMX19_00610 0.52 +1.0
624,262 - MPMX19_00610 0.52 +1.1
624,262 - MPMX19_00610 0.52 -1.6
624,262 - MPMX19_00610 0.52 -1.3
624,275 + MPMX19_00610 0.53 -0.8
624,275 + MPMX19_00610 0.53 +1.2
624,276 - MPMX19_00610 0.53 +1.5

Or see this region's nucleotide sequence