Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00530

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00528 and MPMX19_00529 overlap by 4 nucleotidesMPMX19_00529 and MPMX19_00530 are separated by 42 nucleotidesMPMX19_00530 and MPMX19_00531 are separated by 125 nucleotides MPMX19_00528: MPMX19_00528 - Beta-barrel assembly-enhancing protease, at 537,857 to 540,502 _00528 MPMX19_00529: MPMX19_00529 - hypothetical protein, at 540,499 to 541,296 _00529 MPMX19_00530: MPMX19_00530 - Orotate phosphoribosyltransferase, at 541,339 to 542,022 _00530 MPMX19_00531: MPMX19_00531 - hypothetical protein, at 542,148 to 543,824 _00531 Position (kb) 541 542 543Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 540.598 kb on + strand, within MPMX19_00529at 540.598 kb on + strand, within MPMX19_00529at 540.598 kb on + strand, within MPMX19_00529at 540.598 kb on + strand, within MPMX19_00529at 540.598 kb on + strand, within MPMX19_00529at 540.598 kb on + strand, within MPMX19_00529at 540.599 kb on - strand, within MPMX19_00529at 540.599 kb on - strand, within MPMX19_00529at 540.599 kb on - strand, within MPMX19_00529at 540.599 kb on - strand, within MPMX19_00529at 540.599 kb on - strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.724 kb on + strand, within MPMX19_00529at 540.725 kb on + strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.725 kb on - strand, within MPMX19_00529at 540.748 kb on + strand, within MPMX19_00529at 540.748 kb on + strand, within MPMX19_00529at 540.748 kb on + strand, within MPMX19_00529at 540.748 kb on + strand, within MPMX19_00529at 540.748 kb on + strand, within MPMX19_00529at 540.749 kb on - strand, within MPMX19_00529at 540.749 kb on - strand, within MPMX19_00529at 540.749 kb on - strand, within MPMX19_00529at 540.749 kb on - strand, within MPMX19_00529at 540.769 kb on + strand, within MPMX19_00529at 540.769 kb on + strand, within MPMX19_00529at 540.769 kb on + strand, within MPMX19_00529at 540.770 kb on - strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.800 kb on + strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.801 kb on - strand, within MPMX19_00529at 540.805 kb on + strand, within MPMX19_00529at 540.805 kb on + strand, within MPMX19_00529at 540.806 kb on - strand, within MPMX19_00529at 540.928 kb on + strand, within MPMX19_00529at 540.955 kb on + strand, within MPMX19_00529at 540.955 kb on + strand, within MPMX19_00529at 540.956 kb on - strand, within MPMX19_00529at 540.956 kb on - strand, within MPMX19_00529at 541.535 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.716 kb on - strand, within MPMX19_00530at 541.716 kb on - strand, within MPMX19_00530at 541.716 kb on - strand, within MPMX19_00530at 541.716 kb on - strand, within MPMX19_00530at 541.716 kb on - strand, within MPMX19_00530at 541.896 kb on - strand, within MPMX19_00530at 541.896 kb on - strand, within MPMX19_00530at 542.074 kb on - strandat 542.165 kb on + strandat 542.165 kb on + strandat 542.166 kb on - strandat 542.166 kb on - strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.174 kb on - strandat 542.174 kb on - strandat 542.174 kb on - strandat 542.174 kb on - strandat 542.174 kb on - strandat 542.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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540,598 + MPMX19_00529 0.12 -1.0
540,598 + MPMX19_00529 0.12 -0.1
540,598 + MPMX19_00529 0.12 -0.8
540,598 + MPMX19_00529 0.12 +0.4
540,598 + MPMX19_00529 0.12 -0.4
540,598 + MPMX19_00529 0.12 +0.1
540,599 - MPMX19_00529 0.13 +1.1
540,599 - MPMX19_00529 0.13 -1.3
540,599 - MPMX19_00529 0.13 +0.5
540,599 - MPMX19_00529 0.13 -1.6
540,599 - MPMX19_00529 0.13 -0.4
540,724 + MPMX19_00529 0.28 -1.4
540,724 + MPMX19_00529 0.28 -1.4
540,724 + MPMX19_00529 0.28 -1.9
540,724 + MPMX19_00529 0.28 -0.2
540,724 + MPMX19_00529 0.28 +0.5
540,724 + MPMX19_00529 0.28 +1.4
540,724 + MPMX19_00529 0.28 +0.4
540,724 + MPMX19_00529 0.28 -0.0
540,724 + MPMX19_00529 0.28 +0.8
540,724 + MPMX19_00529 0.28 -0.1
540,724 + MPMX19_00529 0.28 -0.5
540,724 + MPMX19_00529 0.28 -1.4
540,724 + MPMX19_00529 0.28 -0.8
540,724 + MPMX19_00529 0.28 +0.6
540,724 + MPMX19_00529 0.28 -1.8
540,724 + MPMX19_00529 0.28 -1.4
540,725 + MPMX19_00529 0.28 +3.9
540,725 - MPMX19_00529 0.28 -0.4
540,725 - MPMX19_00529 0.28 +0.4
540,725 - MPMX19_00529 0.28 -0.4
540,725 - MPMX19_00529 0.28 -0.4
540,725 - MPMX19_00529 0.28 -0.5
540,725 - MPMX19_00529 0.28 -0.0
540,725 - MPMX19_00529 0.28 -0.7
540,725 - MPMX19_00529 0.28 +0.6
540,725 - MPMX19_00529 0.28 -0.6
540,725 - MPMX19_00529 0.28 -0.3
540,725 - MPMX19_00529 0.28 +0.2
540,725 - MPMX19_00529 0.28 -1.0
540,725 - MPMX19_00529 0.28 -0.5
540,725 - MPMX19_00529 0.28 -1.3
540,748 + MPMX19_00529 0.31 +0.5
540,748 + MPMX19_00529 0.31 -0.1
540,748 + MPMX19_00529 0.31 +1.1
540,748 + MPMX19_00529 0.31 +0.7
540,748 + MPMX19_00529 0.31 +0.6
540,749 - MPMX19_00529 0.31 -0.3
540,749 - MPMX19_00529 0.31 -0.4
540,749 - MPMX19_00529 0.31 -0.0
540,749 - MPMX19_00529 0.31 +1.0
540,769 + MPMX19_00529 0.34 -1.1
540,769 + MPMX19_00529 0.34 -1.6
540,769 + MPMX19_00529 0.34 -0.1
540,770 - MPMX19_00529 0.34 -0.8
540,800 + MPMX19_00529 0.38 +0.4
540,800 + MPMX19_00529 0.38 -0.7
540,800 + MPMX19_00529 0.38 +0.1
540,800 + MPMX19_00529 0.38 -0.0
540,800 + MPMX19_00529 0.38 -2.1
540,800 + MPMX19_00529 0.38 +0.7
540,800 + MPMX19_00529 0.38 +0.6
540,800 + MPMX19_00529 0.38 -0.3
540,800 + MPMX19_00529 0.38 -0.5
540,800 + MPMX19_00529 0.38 -0.3
540,800 + MPMX19_00529 0.38 -0.0
540,800 + MPMX19_00529 0.38 +0.6
540,800 + MPMX19_00529 0.38 -0.4
540,800 + MPMX19_00529 0.38 +0.1
540,800 + MPMX19_00529 0.38 -2.3
540,800 + MPMX19_00529 0.38 -1.4
540,800 + MPMX19_00529 0.38 -0.8
540,800 + MPMX19_00529 0.38 -0.4
540,800 + MPMX19_00529 0.38 -0.1
540,801 - MPMX19_00529 0.38 -0.6
540,801 - MPMX19_00529 0.38 +0.4
540,801 - MPMX19_00529 0.38 -1.3
540,801 - MPMX19_00529 0.38 +1.3
540,801 - MPMX19_00529 0.38 +0.8
540,801 - MPMX19_00529 0.38 -0.4
540,801 - MPMX19_00529 0.38 -0.2
540,801 - MPMX19_00529 0.38 +1.0
540,801 - MPMX19_00529 0.38 +0.5
540,801 - MPMX19_00529 0.38 -0.9
540,801 - MPMX19_00529 0.38 +2.1
540,801 - MPMX19_00529 0.38 +0.4
540,801 - MPMX19_00529 0.38 -1.2
540,805 + MPMX19_00529 0.38 +0.6
540,805 + MPMX19_00529 0.38 -1.4
540,806 - MPMX19_00529 0.38 -0.8
540,928 + MPMX19_00529 0.54 -0.0
540,955 + MPMX19_00529 0.57 -0.5
540,955 + MPMX19_00529 0.57 -0.0
540,956 - MPMX19_00529 0.57 +0.7
540,956 - MPMX19_00529 0.57 -1.0
541,535 + MPMX19_00530 0.29 -0.6
541,715 + MPMX19_00530 0.55 -1.0
541,715 + MPMX19_00530 0.55 -0.0
541,715 + MPMX19_00530 0.55 +0.4
541,715 + MPMX19_00530 0.55 -1.1
541,715 + MPMX19_00530 0.55 +0.3
541,715 + MPMX19_00530 0.55 -1.6
541,715 + MPMX19_00530 0.55 -1.8
541,716 - MPMX19_00530 0.55 +0.1
541,716 - MPMX19_00530 0.55 +0.6
541,716 - MPMX19_00530 0.55 -1.1
541,716 - MPMX19_00530 0.55 -1.9
541,716 - MPMX19_00530 0.55 -1.3
541,896 - MPMX19_00530 0.81 -0.8
541,896 - MPMX19_00530 0.81 -1.1
542,074 - -1.3
542,165 + +0.1
542,165 + -1.0
542,166 - +0.2
542,166 - -1.3
542,173 + -0.1
542,173 + +0.1
542,173 + +0.4
542,173 + +1.0
542,173 + -1.3
542,173 + -0.1
542,173 + +0.1
542,173 + +0.3
542,173 + -1.8
542,173 + -0.8
542,174 - -0.4
542,174 - +0.4
542,174 - -0.4
542,174 - +1.1
542,174 - -1.8
542,174 - -1.0

Or see this region's nucleotide sequence