Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00512 and MPMX19_00513 are separated by 254 nucleotides MPMX19_00513 and MPMX19_00514 are separated by 302 nucleotides
MPMX19_00512: MPMX19_00512 - Sensor histidine kinase RcsC, at 515,154 to 516,764
_00512
MPMX19_00513: MPMX19_00513 - Phosphotransferase RcsD, at 517,019 to 518,488
_00513
MPMX19_00514: MPMX19_00514 - Sensor histidine kinase RcsC, at 518,791 to 521,076
_00514
Position (kb) 517
518
519 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 516.375 kb on + strand, within MPMX19_00512 at 516.375 kb on + strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.412 kb on - strand, within MPMX19_00512 at 516.783 kb on + strand at 516.783 kb on + strand at 516.783 kb on + strand at 516.783 kb on + strand at 516.784 kb on - strand at 516.784 kb on - strand at 516.784 kb on - strand at 516.790 kb on - strand at 516.790 kb on - strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.816 kb on - strand at 516.827 kb on + strand at 516.827 kb on + strand at 516.828 kb on - strand at 516.842 kb on - strand at 516.842 kb on - strand at 516.884 kb on + strand at 516.919 kb on + strand at 516.919 kb on + strand at 516.919 kb on + strand at 516.920 kb on - strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.990 kb on + strand at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.210 kb on + strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.211 kb on - strand, within MPMX19_00513 at 518.409 kb on - strand at 518.529 kb on + strand at 518.529 kb on + strand at 518.529 kb on + strand at 518.529 kb on + strand at 518.529 kb on + strand at 518.530 kb on - strand at 518.530 kb on - strand at 518.540 kb on + strand at 518.540 kb on + strand at 518.541 kb on - strand at 518.554 kb on + strand at 518.555 kb on - strand at 518.604 kb on + strand at 518.605 kb on - strand at 518.605 kb on - strand at 518.651 kb on - strand at 518.673 kb on + strand at 518.722 kb on + strand at 518.722 kb on + strand at 518.723 kb on - strand at 518.738 kb on + strand at 518.739 kb on - strand at 519.073 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.400 kb on + strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.401 kb on - strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.430 kb on + strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.431 kb on - strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.442 kb on + strand, within MPMX19_00514 at 519.443 kb on - strand, within MPMX19_00514 at 519.443 kb on - strand, within MPMX19_00514 at 519.443 kb on - strand, within MPMX19_00514 at 519.443 kb on - strand, within MPMX19_00514 at 519.443 kb on - strand, within MPMX19_00514 at 519.478 kb on + strand, within MPMX19_00514 at 519.478 kb on + strand, within MPMX19_00514 at 519.478 kb on + strand, within MPMX19_00514 at 519.478 kb on + strand, within MPMX19_00514 at 519.479 kb on - strand, within MPMX19_00514 at 519.479 kb on - strand, within MPMX19_00514 at 519.479 kb on - strand, within MPMX19_00514 at 519.479 kb on - strand, within MPMX19_00514
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 516,375 + MPMX19_00512 0.76 +0.1 516,375 + MPMX19_00512 0.76 +0.3 516,376 - MPMX19_00512 0.76 -0.6 516,376 - MPMX19_00512 0.76 +0.4 516,376 - MPMX19_00512 0.76 -0.0 516,412 - MPMX19_00512 0.78 -3.0 516,783 + -1.0 516,783 + -0.8 516,783 + +1.8 516,783 + -0.8 516,784 - +1.2 516,784 - +0.7 516,784 - +0.5 516,790 - -0.7 516,790 - +0.6 516,815 + -1.8 516,815 + -0.8 516,815 + +0.9 516,815 + -0.4 516,816 - -0.8 516,827 + -0.3 516,827 + +0.4 516,828 - +0.1 516,842 - +0.3 516,842 - -0.4 516,884 + +0.5 516,919 + +0.9 516,919 + -1.3 516,919 + -1.4 516,920 - -1.6 516,977 + +0.1 516,977 + +0.7 516,977 + +1.1 516,977 + -1.0 516,977 + +0.5 516,977 + +0.5 516,977 + +0.7 516,977 + +0.8 516,977 + -0.8 516,977 + +1.1 516,977 + +0.2 516,977 + +0.3 516,977 + +0.2 516,977 + -0.9 516,977 - +0.2 516,978 - -0.6 516,978 - +0.2 516,978 - +1.5 516,978 - -0.8 516,978 - -0.6 516,978 - +0.3 516,984 + -0.8 516,984 + +0.7 516,984 + +0.7 516,984 + -0.8 516,984 + -1.5 516,984 + -0.0 516,985 - -1.2 516,985 - -0.2 516,985 - -0.6 516,985 - -0.0 516,985 - -1.3 516,985 - -0.0 516,985 - -1.3 516,985 - -1.1 516,985 - -1.6 516,985 - +0.1 516,985 - +0.6 516,985 - +0.5 516,990 + +0.4 517,251 + MPMX19_00513 0.16 +0.1 517,251 + MPMX19_00513 0.16 -1.8 517,251 + MPMX19_00513 0.16 +0.7 517,251 + MPMX19_00513 0.16 -1.6 517,251 + MPMX19_00513 0.16 -1.8 517,251 + MPMX19_00513 0.16 -0.4 517,251 + MPMX19_00513 0.16 +0.1 517,251 + MPMX19_00513 0.16 -1.6 517,251 + MPMX19_00513 0.16 +0.1 517,252 - MPMX19_00513 0.16 -1.0 517,252 - MPMX19_00513 0.16 +0.1 517,252 - MPMX19_00513 0.16 +0.4 517,252 - MPMX19_00513 0.16 -0.9 517,252 - MPMX19_00513 0.16 +0.1 517,252 - MPMX19_00513 0.16 -0.5 517,252 - MPMX19_00513 0.16 -0.7 517,252 - MPMX19_00513 0.16 -1.3 517,252 - MPMX19_00513 0.16 -0.5 517,252 - MPMX19_00513 0.16 -1.5 517,252 - MPMX19_00513 0.16 +0.7 517,252 - MPMX19_00513 0.16 -0.7 517,252 - MPMX19_00513 0.16 -1.8 517,252 - MPMX19_00513 0.16 +0.7 518,210 + MPMX19_00513 0.81 -0.5 518,210 + MPMX19_00513 0.81 -0.5 518,210 + MPMX19_00513 0.81 +0.4 518,210 + MPMX19_00513 0.81 +0.4 518,210 + MPMX19_00513 0.81 -0.7 518,210 + MPMX19_00513 0.81 -0.3 518,210 + MPMX19_00513 0.81 -0.9 518,210 + MPMX19_00513 0.81 +0.5 518,210 + MPMX19_00513 0.81 -1.2 518,211 - MPMX19_00513 0.81 +0.2 518,211 - MPMX19_00513 0.81 -0.5 518,211 - MPMX19_00513 0.81 +1.3 518,211 - MPMX19_00513 0.81 -0.4 518,211 - MPMX19_00513 0.81 +1.5 518,211 - MPMX19_00513 0.81 -1.2 518,211 - MPMX19_00513 0.81 -0.7 518,211 - MPMX19_00513 0.81 +3.9 518,211 - MPMX19_00513 0.81 -1.2 518,211 - MPMX19_00513 0.81 -0.3 518,409 - -0.0 518,529 + -1.3 518,529 + +0.4 518,529 + -0.5 518,529 + -0.2 518,529 + -0.7 518,530 - +0.3 518,530 - +0.1 518,540 + -0.3 518,540 + +0.4 518,541 - +0.0 518,554 + -0.6 518,555 - -0.3 518,604 + +1.5 518,605 - +0.8 518,605 - +0.9 518,651 - -0.2 518,673 + -1.6 518,722 + +0.4 518,722 + -0.6 518,723 - -1.0 518,738 + +0.2 518,739 - +0.1 519,073 + MPMX19_00514 0.12 -0.5 519,400 + MPMX19_00514 0.27 -1.7 519,400 + MPMX19_00514 0.27 -0.0 519,400 + MPMX19_00514 0.27 -2.0 519,400 + MPMX19_00514 0.27 -0.7 519,400 + MPMX19_00514 0.27 -0.6 519,400 + MPMX19_00514 0.27 -0.9 519,400 + MPMX19_00514 0.27 -1.0 519,400 + MPMX19_00514 0.27 -1.6 519,400 + MPMX19_00514 0.27 -0.6 519,400 + MPMX19_00514 0.27 +0.1 519,400 + MPMX19_00514 0.27 -0.0 519,401 - MPMX19_00514 0.27 +0.3 519,401 - MPMX19_00514 0.27 -0.5 519,401 - MPMX19_00514 0.27 +1.8 519,401 - MPMX19_00514 0.27 -0.2 519,401 - MPMX19_00514 0.27 +0.5 519,401 - MPMX19_00514 0.27 -0.8 519,401 - MPMX19_00514 0.27 +1.1 519,401 - MPMX19_00514 0.27 -1.6 519,401 - MPMX19_00514 0.27 -1.0 519,430 + MPMX19_00514 0.28 +0.7 519,430 + MPMX19_00514 0.28 -0.7 519,430 + MPMX19_00514 0.28 -1.0 519,430 + MPMX19_00514 0.28 -0.5 519,430 + MPMX19_00514 0.28 +0.9 519,430 + MPMX19_00514 0.28 -0.9 519,430 + MPMX19_00514 0.28 +0.1 519,430 + MPMX19_00514 0.28 +1.3 519,430 + MPMX19_00514 0.28 -0.5 519,430 + MPMX19_00514 0.28 +1.0 519,430 + MPMX19_00514 0.28 -0.4 519,430 + MPMX19_00514 0.28 -0.8 519,430 + MPMX19_00514 0.28 -0.3 519,430 + MPMX19_00514 0.28 -1.0 519,430 + MPMX19_00514 0.28 +0.4 519,430 + MPMX19_00514 0.28 -0.5 519,430 + MPMX19_00514 0.28 -1.2 519,431 - MPMX19_00514 0.28 -0.2 519,431 - MPMX19_00514 0.28 +0.7 519,431 - MPMX19_00514 0.28 -0.3 519,431 - MPMX19_00514 0.28 -0.0 519,431 - MPMX19_00514 0.28 +0.5 519,431 - MPMX19_00514 0.28 +0.9 519,431 - MPMX19_00514 0.28 +0.7 519,431 - MPMX19_00514 0.28 +0.1 519,431 - MPMX19_00514 0.28 -0.7 519,431 - MPMX19_00514 0.28 +0.7 519,431 - MPMX19_00514 0.28 -0.2 519,431 - MPMX19_00514 0.28 +1.1 519,431 - MPMX19_00514 0.28 +0.1 519,431 - MPMX19_00514 0.28 -0.5 519,431 - MPMX19_00514 0.28 -0.3 519,431 - MPMX19_00514 0.28 -1.0 519,431 - MPMX19_00514 0.28 -0.3 519,431 - MPMX19_00514 0.28 -1.0 519,431 - MPMX19_00514 0.28 +0.1 519,431 - MPMX19_00514 0.28 +0.9 519,431 - MPMX19_00514 0.28 -1.3 519,442 + MPMX19_00514 0.28 +0.2 519,442 + MPMX19_00514 0.28 +0.2 519,442 + MPMX19_00514 0.28 +0.5 519,442 + MPMX19_00514 0.28 +2.9 519,442 + MPMX19_00514 0.28 -0.3 519,442 + MPMX19_00514 0.28 -0.8 519,443 - MPMX19_00514 0.29 -1.1 519,443 - MPMX19_00514 0.29 +0.1 519,443 - MPMX19_00514 0.29 -3.7 519,443 - MPMX19_00514 0.29 +0.3 519,443 - MPMX19_00514 0.29 +2.2 519,478 + MPMX19_00514 0.30 -0.0 519,478 + MPMX19_00514 0.30 -1.8 519,478 + MPMX19_00514 0.30 +1.0 519,478 + MPMX19_00514 0.30 +0.0 519,479 - MPMX19_00514 0.30 +0.2 519,479 - MPMX19_00514 0.30 -0.6 519,479 - MPMX19_00514 0.30 -0.6 519,479 - MPMX19_00514 0.30 +0.1
Or see this region's nucleotide sequence