Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00333 and MPMX19_00334 are separated by 32 nucleotides MPMX19_00334 and MPMX19_00335 are separated by 39 nucleotides
MPMX19_00333: MPMX19_00333 - Acetylglutamate kinase, at 335,681 to 336,580
_00333
MPMX19_00334: MPMX19_00334 - hypothetical protein, at 336,613 to 336,897
_00334
MPMX19_00335: MPMX19_00335 - Magnesium transport protein CorA, at 336,937 to 337,920
_00335
Position (kb) 336
337 Strain fitness (log2 ratio) -2
-1
0
1 at 335.639 kb on + strand at 336.721 kb on + strand, within MPMX19_00334 at 336.721 kb on + strand, within MPMX19_00334 at 336.721 kb on + strand, within MPMX19_00334 at 336.721 kb on + strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.722 kb on - strand, within MPMX19_00334 at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.895 kb on + strand at 336.896 kb on - strand at 336.896 kb on - strand at 336.896 kb on - strand at 336.896 kb on - strand at 337.430 kb on - strand, within MPMX19_00335 at 337.654 kb on + strand, within MPMX19_00335 at 337.654 kb on + strand, within MPMX19_00335 at 337.654 kb on + strand, within MPMX19_00335 at 337.655 kb on - strand, within MPMX19_00335 at 337.655 kb on - strand, within MPMX19_00335 at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.894 kb on + strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand at 337.895 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 335,639 + +1.6 336,721 + MPMX19_00334 0.38 -1.8 336,721 + MPMX19_00334 0.38 +0.6 336,721 + MPMX19_00334 0.38 +0.5 336,721 + MPMX19_00334 0.38 +0.4 336,722 - MPMX19_00334 0.38 -1.6 336,722 - MPMX19_00334 0.38 -1.4 336,722 - MPMX19_00334 0.38 -0.7 336,722 - MPMX19_00334 0.38 -2.1 336,895 + +0.1 336,895 + -0.4 336,895 + -0.4 336,895 + -0.2 336,895 + -0.6 336,895 + -1.0 336,895 + -0.7 336,895 + -0.4 336,895 + +0.3 336,896 - -1.6 336,896 - -0.7 336,896 - -1.2 336,896 - +0.1 337,430 - MPMX19_00335 0.50 -0.2 337,654 + MPMX19_00335 0.73 +0.0 337,654 + MPMX19_00335 0.73 -0.4 337,654 + MPMX19_00335 0.73 +0.3 337,655 - MPMX19_00335 0.73 -0.3 337,655 - MPMX19_00335 0.73 -2.0 337,894 + +1.1 337,894 + -0.4 337,894 + +0.4 337,894 + -1.4 337,894 + +0.8 337,894 + +0.4 337,895 - +0.0 337,895 - +0.3 337,895 - +0.6 337,895 - +0.9 337,895 - -0.4 337,895 - +0.6 337,895 - -1.0 337,895 - -1.0 337,895 - -0.4
Or see this region's nucleotide sequence