Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00255 and MPMX19_00256 are separated by 239 nucleotides MPMX19_00256 and MPMX19_00257 are separated by 118 nucleotides MPMX19_00257 and MPMX19_00258 are separated by 121 nucleotides
MPMX19_00255: MPMX19_00255 - hypothetical protein, at 256,039 to 257,199
_00255
MPMX19_00256: MPMX19_00256 - hypothetical protein, at 257,439 to 257,933
_00256
MPMX19_00257: MPMX19_00257 - hypothetical protein, at 258,052 to 258,627
_00257
MPMX19_00258: MPMX19_00258 - Protein ImuB, at 258,749 to 260,293
_00258
Position (kb) 258
259 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.072 kb on + strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.073 kb on - strand, within MPMX19_00255 at 257.108 kb on + strand at 257.108 kb on + strand at 257.108 kb on + strand at 257.109 kb on - strand at 257.109 kb on - strand at 257.109 kb on - strand at 257.478 kb on + strand at 257.478 kb on + strand at 257.478 kb on + strand at 257.479 kb on - strand at 257.479 kb on - strand at 257.593 kb on + strand, within MPMX19_00256 at 257.594 kb on - strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.737 kb on + strand, within MPMX19_00256 at 257.738 kb on - strand, within MPMX19_00256 at 257.738 kb on - strand, within MPMX19_00256 at 257.738 kb on - strand, within MPMX19_00256 at 257.738 kb on - strand, within MPMX19_00256 at 257.738 kb on - strand, within MPMX19_00256 at 257.748 kb on + strand, within MPMX19_00256 at 257.748 kb on + strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.749 kb on - strand, within MPMX19_00256 at 257.973 kb on - strand at 258.017 kb on + strand at 258.017 kb on + strand at 258.018 kb on - strand at 258.018 kb on - strand at 258.018 kb on - strand at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.482 kb on + strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.483 kb on - strand, within MPMX19_00257 at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.629 kb on + strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.630 kb on - strand at 258.707 kb on - strand at 258.729 kb on - strand at 258.895 kb on - strand at 259.053 kb on - strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.415 kb on + strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258 at 259.416 kb on - strand, within MPMX19_00258
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 257,072 + MPMX19_00255 0.89 -0.5 257,072 + MPMX19_00255 0.89 -0.8 257,072 + MPMX19_00255 0.89 +0.1 257,072 + MPMX19_00255 0.89 +1.0 257,072 + MPMX19_00255 0.89 -0.5 257,072 + MPMX19_00255 0.89 -0.1 257,072 + MPMX19_00255 0.89 +0.2 257,072 + MPMX19_00255 0.89 -0.7 257,072 + MPMX19_00255 0.89 +0.9 257,072 + MPMX19_00255 0.89 +0.1 257,072 + MPMX19_00255 0.89 -0.6 257,072 + MPMX19_00255 0.89 -1.5 257,072 + MPMX19_00255 0.89 -0.7 257,072 + MPMX19_00255 0.89 -0.6 257,072 + MPMX19_00255 0.89 +0.4 257,073 - MPMX19_00255 0.89 -1.1 257,073 - MPMX19_00255 0.89 -1.3 257,073 - MPMX19_00255 0.89 -0.6 257,073 - MPMX19_00255 0.89 -1.2 257,073 - MPMX19_00255 0.89 -0.2 257,073 - MPMX19_00255 0.89 +0.6 257,073 - MPMX19_00255 0.89 -0.2 257,073 - MPMX19_00255 0.89 -0.1 257,073 - MPMX19_00255 0.89 +0.4 257,073 - MPMX19_00255 0.89 -0.2 257,073 - MPMX19_00255 0.89 +0.9 257,073 - MPMX19_00255 0.89 -1.9 257,073 - MPMX19_00255 0.89 -0.5 257,073 - MPMX19_00255 0.89 +0.1 257,073 - MPMX19_00255 0.89 -0.6 257,073 - MPMX19_00255 0.89 -0.9 257,073 - MPMX19_00255 0.89 -0.1 257,073 - MPMX19_00255 0.89 +0.5 257,108 + -2.3 257,108 + -0.2 257,108 + +0.3 257,109 - -0.5 257,109 - -0.9 257,109 - -0.0 257,478 + -2.9 257,478 + -0.9 257,478 + -0.1 257,479 - -0.3 257,479 - +0.2 257,593 + MPMX19_00256 0.31 -0.9 257,594 - MPMX19_00256 0.31 -0.2 257,737 + MPMX19_00256 0.60 -0.4 257,737 + MPMX19_00256 0.60 -1.2 257,737 + MPMX19_00256 0.60 -0.4 257,737 + MPMX19_00256 0.60 +0.5 257,737 + MPMX19_00256 0.60 -0.3 257,737 + MPMX19_00256 0.60 -1.0 257,738 - MPMX19_00256 0.60 -0.8 257,738 - MPMX19_00256 0.60 +0.3 257,738 - MPMX19_00256 0.60 +0.7 257,738 - MPMX19_00256 0.60 -0.3 257,738 - MPMX19_00256 0.60 +0.2 257,748 + MPMX19_00256 0.62 -0.2 257,748 + MPMX19_00256 0.62 +0.6 257,749 - MPMX19_00256 0.63 +0.3 257,749 - MPMX19_00256 0.63 +0.2 257,749 - MPMX19_00256 0.63 -0.4 257,749 - MPMX19_00256 0.63 +0.6 257,749 - MPMX19_00256 0.63 +0.2 257,749 - MPMX19_00256 0.63 -0.4 257,973 - -0.1 258,017 + +0.7 258,017 + -0.1 258,018 - -1.9 258,018 - +0.6 258,018 - +0.3 258,482 + MPMX19_00257 0.75 -0.5 258,482 + MPMX19_00257 0.75 +0.6 258,482 + MPMX19_00257 0.75 -0.2 258,482 + MPMX19_00257 0.75 +1.2 258,482 + MPMX19_00257 0.75 -0.8 258,482 + MPMX19_00257 0.75 +0.6 258,483 - MPMX19_00257 0.75 -0.4 258,483 - MPMX19_00257 0.75 -0.1 258,483 - MPMX19_00257 0.75 +0.3 258,483 - MPMX19_00257 0.75 -0.1 258,483 - MPMX19_00257 0.75 +0.6 258,483 - MPMX19_00257 0.75 -0.5 258,483 - MPMX19_00257 0.75 -0.9 258,483 - MPMX19_00257 0.75 -0.2 258,483 - MPMX19_00257 0.75 +0.3 258,483 - MPMX19_00257 0.75 -1.4 258,629 + +0.5 258,629 + -1.5 258,629 + -0.0 258,629 + -1.1 258,629 + -0.9 258,629 + -0.9 258,629 + +1.2 258,629 + -0.1 258,629 + +0.9 258,629 + +0.3 258,629 + +0.2 258,629 + +0.6 258,629 + -0.7 258,629 + -0.2 258,629 + +0.3 258,630 - +0.4 258,630 - -0.3 258,630 - +0.8 258,630 - -1.3 258,630 - -1.8 258,630 - +0.1 258,630 - -0.0 258,630 - -1.2 258,630 - -0.1 258,630 - +0.8 258,707 - +0.2 258,729 - -0.5 258,895 - -0.6 259,053 - MPMX19_00258 0.20 +0.7 259,415 + MPMX19_00258 0.43 +0.3 259,415 + MPMX19_00258 0.43 -2.1 259,415 + MPMX19_00258 0.43 -1.8 259,415 + MPMX19_00258 0.43 +0.6 259,416 - MPMX19_00258 0.43 -0.1 259,416 - MPMX19_00258 0.43 -0.8 259,416 - MPMX19_00258 0.43 +0.4 259,416 - MPMX19_00258 0.43 -0.1 259,416 - MPMX19_00258 0.43 +0.5
Or see this region's nucleotide sequence