Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00235

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00233 and MPMX19_00234 are separated by 207 nucleotidesMPMX19_00234 and MPMX19_00235 are separated by 36 nucleotidesMPMX19_00235 and MPMX19_00236 are separated by 200 nucleotidesMPMX19_00236 and MPMX19_00237 are separated by 109 nucleotides MPMX19_00233: MPMX19_00233 - hypothetical protein, at 236,472 to 238,412 _00233 MPMX19_00234: MPMX19_00234 - hypothetical protein, at 238,620 to 239,246 _00234 MPMX19_00235: MPMX19_00235 - hypothetical protein, at 239,283 to 239,576 _00235 MPMX19_00236: MPMX19_00236 - HTH-type transcriptional regulator IscR, at 239,777 to 240,232 _00236 MPMX19_00237: MPMX19_00237 - Cysteine synthase, at 240,342 to 241,301 _00237 Position (kb) 239 240Strain fitness (log2 ratio) -2 -1 0 1 2at 238.452 kb on + strandat 238.452 kb on + strandat 238.453 kb on - strandat 238.453 kb on - strandat 238.454 kb on + strandat 238.455 kb on - strandat 238.455 kb on - strandat 238.455 kb on - strandat 238.455 kb on - strandat 238.565 kb on + strandat 238.575 kb on + strandat 238.579 kb on + strandat 238.593 kb on - strandat 238.593 kb on - strandat 238.902 kb on + strand, within MPMX19_00234at 238.902 kb on + strand, within MPMX19_00234at 238.902 kb on + strand, within MPMX19_00234at 238.998 kb on + strand, within MPMX19_00234at 238.998 kb on + strand, within MPMX19_00234at 238.998 kb on + strand, within MPMX19_00234at 238.998 kb on + strand, within MPMX19_00234at 238.998 kb on + strand, within MPMX19_00234at 239.282 kb on + strandat 239.282 kb on + strandat 239.282 kb on + strandat 239.282 kb on + strandat 239.282 kb on + strandat 239.282 kb on + strandat 239.282 kb on + strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.283 kb on - strandat 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.328 kb on + strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.329 kb on - strand, within MPMX19_00235at 239.696 kb on + strandat 239.759 kb on + strandat 239.760 kb on - strandat 239.760 kb on - strandat 239.834 kb on + strand, within MPMX19_00236at 239.834 kb on + strand, within MPMX19_00236at 239.834 kb on + strand, within MPMX19_00236at 239.834 kb on + strand, within MPMX19_00236at 239.835 kb on - strand, within MPMX19_00236at 239.835 kb on - strand, within MPMX19_00236at 239.835 kb on - strand, within MPMX19_00236at 239.835 kb on - strand, within MPMX19_00236at 239.835 kb on - strand, within MPMX19_00236at 239.900 kb on + strand, within MPMX19_00236at 239.900 kb on + strand, within MPMX19_00236at 239.901 kb on - strand, within MPMX19_00236at 239.901 kb on - strand, within MPMX19_00236at 239.901 kb on - strand, within MPMX19_00236at 239.901 kb on - strand, within MPMX19_00236at 240.230 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.235 kb on + strandat 240.236 kb on - strandat 240.236 kb on - strandat 240.236 kb on - strandat 240.236 kb on - strandat 240.236 kb on - strandat 240.236 kb on - strandat 240.373 kb on - strandat 240.373 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
238,452 + +0.7
238,452 + -0.1
238,453 - -0.1
238,453 - +0.1
238,454 + +0.4
238,455 - -0.8
238,455 - -0.6
238,455 - -0.5
238,455 - -0.1
238,565 + -1.0
238,575 + +0.5
238,579 + -0.6
238,593 - -0.1
238,593 - -1.0
238,902 + MPMX19_00234 0.45 -0.7
238,902 + MPMX19_00234 0.45 -1.3
238,902 + MPMX19_00234 0.45 +0.9
238,998 + MPMX19_00234 0.60 -0.4
238,998 + MPMX19_00234 0.60 -0.1
238,998 + MPMX19_00234 0.60 -0.0
238,998 + MPMX19_00234 0.60 -0.7
238,998 + MPMX19_00234 0.60 -0.2
239,282 + -0.7
239,282 + -0.1
239,282 + -1.9
239,282 + -0.1
239,282 + -0.2
239,282 + -0.8
239,282 + -0.5
239,283 - -0.4
239,283 - +0.5
239,283 - +0.1
239,283 - -0.4
239,283 - -0.4
239,283 - +0.0
239,283 - -1.8
239,328 + MPMX19_00235 0.15 -0.4
239,328 + MPMX19_00235 0.15 -0.7
239,328 + MPMX19_00235 0.15 -1.3
239,328 + MPMX19_00235 0.15 +0.2
239,328 + MPMX19_00235 0.15 -0.5
239,328 + MPMX19_00235 0.15 -0.9
239,328 + MPMX19_00235 0.15 +0.4
239,328 + MPMX19_00235 0.15 -0.4
239,328 + MPMX19_00235 0.15 -1.1
239,328 + MPMX19_00235 0.15 -1.4
239,328 + MPMX19_00235 0.15 -0.8
239,328 + MPMX19_00235 0.15 +0.3
239,328 + MPMX19_00235 0.15 +0.1
239,328 + MPMX19_00235 0.15 -1.5
239,328 + MPMX19_00235 0.15 -0.7
239,328 + MPMX19_00235 0.15 -0.8
239,329 - MPMX19_00235 0.16 +1.2
239,329 - MPMX19_00235 0.16 -0.4
239,329 - MPMX19_00235 0.16 +0.8
239,329 - MPMX19_00235 0.16 +0.8
239,329 - MPMX19_00235 0.16 +0.6
239,329 - MPMX19_00235 0.16 +1.6
239,329 - MPMX19_00235 0.16 -0.7
239,329 - MPMX19_00235 0.16 +0.6
239,696 + -1.7
239,759 + +1.6
239,760 - -0.1
239,760 - +0.6
239,834 + MPMX19_00236 0.12 -0.7
239,834 + MPMX19_00236 0.12 +0.5
239,834 + MPMX19_00236 0.12 -0.6
239,834 + MPMX19_00236 0.12 -1.2
239,835 - MPMX19_00236 0.13 -0.2
239,835 - MPMX19_00236 0.13 -0.2
239,835 - MPMX19_00236 0.13 -1.0
239,835 - MPMX19_00236 0.13 +0.3
239,835 - MPMX19_00236 0.13 +0.3
239,900 + MPMX19_00236 0.27 -0.4
239,900 + MPMX19_00236 0.27 -0.8
239,901 - MPMX19_00236 0.27 -0.5
239,901 - MPMX19_00236 0.27 +0.6
239,901 - MPMX19_00236 0.27 -0.4
239,901 - MPMX19_00236 0.27 -1.5
240,230 + +0.8
240,235 + -0.4
240,235 + +1.1
240,235 + -0.3
240,235 + -0.3
240,235 + -0.4
240,235 + +1.9
240,235 + +0.4
240,235 + -1.8
240,235 + +1.4
240,235 + -1.6
240,236 - -1.3
240,236 - -1.2
240,236 - -0.8
240,236 - -0.2
240,236 - -0.2
240,236 - -0.3
240,373 - +1.1
240,373 - +2.2

Or see this region's nucleotide sequence