Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00223

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00221 and MPMX19_00222 are separated by 21 nucleotidesMPMX19_00222 and MPMX19_00223 are separated by 241 nucleotidesMPMX19_00223 and MPMX19_00224 are separated by 27 nucleotides MPMX19_00221: MPMX19_00221 - hypothetical protein, at 223,224 to 224,441 _00221 MPMX19_00222: MPMX19_00222 - hypothetical protein, at 224,463 to 224,732 _00222 MPMX19_00223: MPMX19_00223 - Zinc-type alcohol dehydrogenase-like protein, at 224,974 to 225,999 _00223 MPMX19_00224: MPMX19_00224 - HTH-type transcriptional regulator GltC, at 226,027 to 226,920 _00224 Position (kb) 224 225 226Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 224.121 kb on + strand, within MPMX19_00221at 224.122 kb on - strand, within MPMX19_00221at 224.268 kb on + strand, within MPMX19_00221at 224.268 kb on + strand, within MPMX19_00221at 224.268 kb on + strand, within MPMX19_00221at 224.268 kb on + strand, within MPMX19_00221at 224.269 kb on - strand, within MPMX19_00221at 224.269 kb on - strand, within MPMX19_00221at 224.269 kb on - strand, within MPMX19_00221at 224.558 kb on - strand, within MPMX19_00222at 224.558 kb on - strand, within MPMX19_00222at 224.560 kb on + strand, within MPMX19_00222at 224.561 kb on - strand, within MPMX19_00222at 224.561 kb on - strand, within MPMX19_00222at 224.596 kb on + strand, within MPMX19_00222at 224.596 kb on + strand, within MPMX19_00222at 224.596 kb on + strand, within MPMX19_00222at 224.596 kb on + strand, within MPMX19_00222at 224.597 kb on - strand, within MPMX19_00222at 224.597 kb on - strand, within MPMX19_00222at 224.597 kb on - strand, within MPMX19_00222at 224.632 kb on + strand, within MPMX19_00222at 224.633 kb on - strand, within MPMX19_00222at 224.633 kb on - strand, within MPMX19_00222at 224.633 kb on - strand, within MPMX19_00222at 224.641 kb on + strand, within MPMX19_00222at 224.641 kb on + strand, within MPMX19_00222at 224.641 kb on + strand, within MPMX19_00222at 224.641 kb on + strand, within MPMX19_00222at 224.642 kb on - strand, within MPMX19_00222at 224.642 kb on - strand, within MPMX19_00222at 224.642 kb on - strand, within MPMX19_00222at 224.642 kb on - strand, within MPMX19_00222at 224.644 kb on + strand, within MPMX19_00222at 224.644 kb on + strand, within MPMX19_00222at 224.644 kb on + strand, within MPMX19_00222at 224.644 kb on + strand, within MPMX19_00222at 224.644 kb on + strand, within MPMX19_00222at 224.644 kb on + strand, within MPMX19_00222at 224.645 kb on - strand, within MPMX19_00222at 224.645 kb on - strand, within MPMX19_00222at 224.645 kb on - strand, within MPMX19_00222at 224.645 kb on - strand, within MPMX19_00222at 224.645 kb on - strand, within MPMX19_00222at 224.645 kb on - strand, within MPMX19_00222at 224.645 kb on - strand, within MPMX19_00222at 224.645 kb on - strand, within MPMX19_00222at 224.645 kb on - strand, within MPMX19_00222at 224.653 kb on + strand, within MPMX19_00222at 224.653 kb on + strand, within MPMX19_00222at 224.653 kb on + strand, within MPMX19_00222at 224.654 kb on - strand, within MPMX19_00222at 224.654 kb on - strand, within MPMX19_00222at 224.654 kb on - strand, within MPMX19_00222at 224.654 kb on - strand, within MPMX19_00222at 224.788 kb on + strandat 224.788 kb on + strandat 224.788 kb on + strandat 224.789 kb on - strandat 224.789 kb on - strandat 224.789 kb on - strandat 224.789 kb on - strandat 224.789 kb on - strandat 224.789 kb on - strandat 224.789 kb on - strandat 224.789 kb on - strandat 224.789 kb on - strandat 224.812 kb on + strandat 224.813 kb on - strandat 224.819 kb on + strandat 224.819 kb on + strandat 224.819 kb on + strandat 224.819 kb on + strandat 224.819 kb on + strandat 224.819 kb on + strandat 224.819 kb on + strandat 224.819 kb on + strandat 224.820 kb on - strandat 224.820 kb on - strandat 224.820 kb on - strandat 224.820 kb on - strandat 224.820 kb on - strandat 224.820 kb on - strandat 224.899 kb on + strandat 224.899 kb on + strandat 224.900 kb on - strandat 224.912 kb on + strandat 224.912 kb on + strandat 224.912 kb on + strandat 224.912 kb on + strandat 224.913 kb on - strandat 224.913 kb on - strandat 224.913 kb on - strandat 225.238 kb on + strand, within MPMX19_00223at 225.238 kb on + strand, within MPMX19_00223at 225.238 kb on + strand, within MPMX19_00223at 225.238 kb on + strand, within MPMX19_00223at 225.238 kb on + strand, within MPMX19_00223at 225.238 kb on + strand, within MPMX19_00223at 225.238 kb on + strand, within MPMX19_00223at 225.238 kb on + strand, within MPMX19_00223at 225.238 kb on + strand, within MPMX19_00223at 225.238 kb on + strand, within MPMX19_00223at 225.239 kb on - strand, within MPMX19_00223at 225.239 kb on - strand, within MPMX19_00223at 225.239 kb on - strand, within MPMX19_00223at 225.239 kb on - strand, within MPMX19_00223at 225.239 kb on - strand, within MPMX19_00223at 225.239 kb on - strand, within MPMX19_00223at 225.239 kb on - strand, within MPMX19_00223at 225.239 kb on - strand, within MPMX19_00223at 225.239 kb on - strand, within MPMX19_00223at 225.239 kb on - strand, within MPMX19_00223at 225.277 kb on + strand, within MPMX19_00223at 225.277 kb on + strand, within MPMX19_00223at 225.277 kb on + strand, within MPMX19_00223at 225.277 kb on + strand, within MPMX19_00223at 225.277 kb on + strand, within MPMX19_00223at 225.277 kb on + strand, within MPMX19_00223at 225.278 kb on - strand, within MPMX19_00223at 225.278 kb on - strand, within MPMX19_00223at 225.278 kb on - strand, within MPMX19_00223at 225.278 kb on - strand, within MPMX19_00223at 225.278 kb on - strand, within MPMX19_00223at 225.278 kb on - strand, within MPMX19_00223at 225.278 kb on - strand, within MPMX19_00223at 225.278 kb on - strand, within MPMX19_00223at 225.643 kb on + strand, within MPMX19_00223at 225.643 kb on + strand, within MPMX19_00223at 225.643 kb on + strand, within MPMX19_00223at 225.643 kb on + strand, within MPMX19_00223at 225.643 kb on + strand, within MPMX19_00223at 225.644 kb on - strand, within MPMX19_00223at 225.644 kb on - strand, within MPMX19_00223at 225.644 kb on - strand, within MPMX19_00223at 225.644 kb on - strand, within MPMX19_00223at 225.644 kb on - strand, within MPMX19_00223at 225.644 kb on - strand, within MPMX19_00223at 225.644 kb on - strand, within MPMX19_00223at 225.927 kb on + strandat 226.028 kb on + strandat 226.028 kb on + strandat 226.028 kb on + strandat 226.029 kb on - strandat 226.286 kb on + strand, within MPMX19_00224at 226.286 kb on + strand, within MPMX19_00224at 226.286 kb on + strand, within MPMX19_00224at 226.286 kb on + strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.287 kb on - strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.613 kb on + strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.614 kb on - strand, within MPMX19_00224at 226.706 kb on + strand, within MPMX19_00224at 226.706 kb on + strand, within MPMX19_00224at 226.706 kb on + strand, within MPMX19_00224at 226.707 kb on - strand, within MPMX19_00224at 226.707 kb on - strand, within MPMX19_00224at 226.707 kb on - strand, within MPMX19_00224at 226.927 kb on + strandat 226.927 kb on + strandat 226.927 kb on + strandat 226.928 kb on - strandat 226.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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224,121 + MPMX19_00221 0.74 +0.1
224,122 - MPMX19_00221 0.74 -2.2
224,268 + MPMX19_00221 0.86 +0.3
224,268 + MPMX19_00221 0.86 -0.2
224,268 + MPMX19_00221 0.86 -1.4
224,268 + MPMX19_00221 0.86 -0.2
224,269 - MPMX19_00221 0.86 +0.5
224,269 - MPMX19_00221 0.86 +1.4
224,269 - MPMX19_00221 0.86 +1.4
224,558 - MPMX19_00222 0.35 -1.4
224,558 - MPMX19_00222 0.35 +0.8
224,560 + MPMX19_00222 0.36 -1.7
224,561 - MPMX19_00222 0.36 -0.1
224,561 - MPMX19_00222 0.36 -0.7
224,596 + MPMX19_00222 0.49 -0.5
224,596 + MPMX19_00222 0.49 -0.4
224,596 + MPMX19_00222 0.49 +0.3
224,596 + MPMX19_00222 0.49 -2.6
224,597 - MPMX19_00222 0.50 -0.9
224,597 - MPMX19_00222 0.50 -0.0
224,597 - MPMX19_00222 0.50 -1.1
224,632 + MPMX19_00222 0.63 -0.2
224,633 - MPMX19_00222 0.63 +0.2
224,633 - MPMX19_00222 0.63 -0.1
224,633 - MPMX19_00222 0.63 -0.7
224,641 + MPMX19_00222 0.66 +0.6
224,641 + MPMX19_00222 0.66 -2.1
224,641 + MPMX19_00222 0.66 -0.2
224,641 + MPMX19_00222 0.66 -0.5
224,642 - MPMX19_00222 0.66 -1.7
224,642 - MPMX19_00222 0.66 -1.9
224,642 - MPMX19_00222 0.66 -4.0
224,642 - MPMX19_00222 0.66 -1.5
224,644 + MPMX19_00222 0.67 -0.1
224,644 + MPMX19_00222 0.67 -1.5
224,644 + MPMX19_00222 0.67 -0.3
224,644 + MPMX19_00222 0.67 +0.9
224,644 + MPMX19_00222 0.67 -0.8
224,644 + MPMX19_00222 0.67 -1.3
224,645 - MPMX19_00222 0.67 -0.4
224,645 - MPMX19_00222 0.67 -1.4
224,645 - MPMX19_00222 0.67 +0.3
224,645 - MPMX19_00222 0.67 -0.9
224,645 - MPMX19_00222 0.67 +1.4
224,645 - MPMX19_00222 0.67 -0.4
224,645 - MPMX19_00222 0.67 +1.7
224,645 - MPMX19_00222 0.67 -1.4
224,645 - MPMX19_00222 0.67 -1.2
224,653 + MPMX19_00222 0.70 -0.9
224,653 + MPMX19_00222 0.70 +1.1
224,653 + MPMX19_00222 0.70 -1.4
224,654 - MPMX19_00222 0.71 -0.2
224,654 - MPMX19_00222 0.71 -1.4
224,654 - MPMX19_00222 0.71 +1.6
224,654 - MPMX19_00222 0.71 -0.4
224,788 + +0.1
224,788 + +1.6
224,788 + -0.2
224,789 - -0.9
224,789 - -0.4
224,789 - +0.6
224,789 - -2.1
224,789 - -1.4
224,789 - -1.2
224,789 - -0.1
224,789 - -0.0
224,789 - +0.9
224,812 + -0.0
224,813 - -1.1
224,819 + -0.1
224,819 + +0.6
224,819 + -0.1
224,819 + -1.8
224,819 + -0.4
224,819 + +1.2
224,819 + -0.0
224,819 + -0.8
224,820 - -1.5
224,820 - +0.1
224,820 - +1.1
224,820 - -0.2
224,820 - +1.2
224,820 - +0.3
224,899 + -0.5
224,899 + +0.4
224,900 - -0.7
224,912 + +0.9
224,912 + -1.5
224,912 + +0.2
224,912 + -1.7
224,913 - -0.5
224,913 - +0.6
224,913 - +0.2
225,238 + MPMX19_00223 0.26 +0.2
225,238 + MPMX19_00223 0.26 -0.2
225,238 + MPMX19_00223 0.26 +0.3
225,238 + MPMX19_00223 0.26 -1.4
225,238 + MPMX19_00223 0.26 +0.8
225,238 + MPMX19_00223 0.26 +0.6
225,238 + MPMX19_00223 0.26 -2.3
225,238 + MPMX19_00223 0.26 +0.1
225,238 + MPMX19_00223 0.26 +0.3
225,238 + MPMX19_00223 0.26 +0.1
225,239 - MPMX19_00223 0.26 +1.1
225,239 - MPMX19_00223 0.26 -0.5
225,239 - MPMX19_00223 0.26 +1.1
225,239 - MPMX19_00223 0.26 +0.6
225,239 - MPMX19_00223 0.26 +1.0
225,239 - MPMX19_00223 0.26 -0.8
225,239 - MPMX19_00223 0.26 -0.3
225,239 - MPMX19_00223 0.26 -0.7
225,239 - MPMX19_00223 0.26 +0.8
225,239 - MPMX19_00223 0.26 +0.6
225,277 + MPMX19_00223 0.30 -0.8
225,277 + MPMX19_00223 0.30 -0.2
225,277 + MPMX19_00223 0.30 -0.6
225,277 + MPMX19_00223 0.30 -0.2
225,277 + MPMX19_00223 0.30 -0.8
225,277 + MPMX19_00223 0.30 +1.4
225,278 - MPMX19_00223 0.30 -0.0
225,278 - MPMX19_00223 0.30 -0.0
225,278 - MPMX19_00223 0.30 -1.3
225,278 - MPMX19_00223 0.30 -0.8
225,278 - MPMX19_00223 0.30 +0.6
225,278 - MPMX19_00223 0.30 -1.4
225,278 - MPMX19_00223 0.30 +0.2
225,278 - MPMX19_00223 0.30 +0.5
225,643 + MPMX19_00223 0.65 -0.2
225,643 + MPMX19_00223 0.65 +0.8
225,643 + MPMX19_00223 0.65 -1.5
225,643 + MPMX19_00223 0.65 +0.6
225,643 + MPMX19_00223 0.65 -1.9
225,644 - MPMX19_00223 0.65 -0.4
225,644 - MPMX19_00223 0.65 -3.2
225,644 - MPMX19_00223 0.65 -0.8
225,644 - MPMX19_00223 0.65 +0.5
225,644 - MPMX19_00223 0.65 +1.3
225,644 - MPMX19_00223 0.65 +0.1
225,644 - MPMX19_00223 0.65 -0.2
225,927 + +1.6
226,028 + +0.2
226,028 + -0.3
226,028 + +0.5
226,029 - -0.5
226,286 + MPMX19_00224 0.29 -0.9
226,286 + MPMX19_00224 0.29 -1.7
226,286 + MPMX19_00224 0.29 +0.1
226,286 + MPMX19_00224 0.29 -0.5
226,287 - MPMX19_00224 0.29 -0.9
226,287 - MPMX19_00224 0.29 +0.6
226,287 - MPMX19_00224 0.29 -1.1
226,287 - MPMX19_00224 0.29 -0.9
226,287 - MPMX19_00224 0.29 -0.3
226,287 - MPMX19_00224 0.29 -1.1
226,287 - MPMX19_00224 0.29 +0.2
226,287 - MPMX19_00224 0.29 +0.5
226,287 - MPMX19_00224 0.29 +0.7
226,287 - MPMX19_00224 0.29 -0.2
226,613 + MPMX19_00224 0.66 -0.6
226,613 + MPMX19_00224 0.66 -1.4
226,613 + MPMX19_00224 0.66 +0.6
226,613 + MPMX19_00224 0.66 -0.4
226,613 + MPMX19_00224 0.66 +0.4
226,613 + MPMX19_00224 0.66 -0.1
226,614 - MPMX19_00224 0.66 +0.6
226,614 - MPMX19_00224 0.66 +0.4
226,614 - MPMX19_00224 0.66 -0.8
226,614 - MPMX19_00224 0.66 +0.4
226,614 - MPMX19_00224 0.66 -0.2
226,614 - MPMX19_00224 0.66 +0.1
226,614 - MPMX19_00224 0.66 +0.4
226,614 - MPMX19_00224 0.66 -0.5
226,706 + MPMX19_00224 0.76 -0.4
226,706 + MPMX19_00224 0.76 -0.7
226,706 + MPMX19_00224 0.76 +0.6
226,707 - MPMX19_00224 0.76 -0.4
226,707 - MPMX19_00224 0.76 +0.2
226,707 - MPMX19_00224 0.76 +0.6
226,927 + -0.4
226,927 + +0.1
226,927 + -0.9
226,928 - -0.4
226,961 - +0.8

Or see this region's nucleotide sequence