Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00149

Experiment: NL-CCM, start OD=0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00147 and MPMX19_00148 are separated by 89 nucleotidesMPMX19_00148 and MPMX19_00149 overlap by 17 nucleotidesMPMX19_00149 and MPMX19_00150 are separated by 108 nucleotidesMPMX19_00150 and MPMX19_00151 overlap by 4 nucleotides MPMX19_00147: MPMX19_00147 - hypothetical protein, at 157,952 to 158,698 _00147 MPMX19_00148: MPMX19_00148 - hypothetical protein, at 158,788 to 159,306 _00148 MPMX19_00149: MPMX19_00149 - hypothetical protein, at 159,290 to 159,763 _00149 MPMX19_00150: MPMX19_00150 - hypothetical protein, at 159,872 to 160,174 _00150 MPMX19_00151: MPMX19_00151 - Tyrosine recombinase XerC, at 160,171 to 161,118 _00151 Position (kb) 159 160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 158.352 kb on - strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.420 kb on + strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.421 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.478 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.526 kb on - strand, within MPMX19_00147at 158.582 kb on + strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.583 kb on - strand, within MPMX19_00147at 158.731 kb on + strandat 158.731 kb on + strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.732 kb on - strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.787 kb on + strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.788 kb on - strandat 158.986 kb on + strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 158.987 kb on - strand, within MPMX19_00148at 159.344 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.497 kb on + strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.498 kb on - strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.503 kb on + strand, within MPMX19_00149at 159.582 kb on - strand, within MPMX19_00149at 159.582 kb on - strand, within MPMX19_00149at 159.611 kb on + strand, within MPMX19_00149at 159.611 kb on + strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.612 kb on - strand, within MPMX19_00149at 159.710 kb on + strand, within MPMX19_00149at 159.710 kb on + strand, within MPMX19_00149at 159.711 kb on - strand, within MPMX19_00149at 159.713 kb on - strand, within MPMX19_00149at 159.723 kb on + strandat 159.723 kb on + strandat 159.778 kb on + strandat 159.778 kb on + strandat 159.779 kb on - strandat 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.956 kb on + strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 159.957 kb on - strand, within MPMX19_00150at 160.039 kb on - strand, within MPMX19_00150at 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.229 kb on + strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.230 kb on - strandat 160.288 kb on + strand, within MPMX19_00151at 160.288 kb on + strand, within MPMX19_00151at 160.289 kb on - strand, within MPMX19_00151at 160.289 kb on - strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.402 kb on + strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.403 kb on - strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.466 kb on + strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.467 kb on - strand, within MPMX19_00151at 160.546 kb on + strand, within MPMX19_00151at 160.546 kb on + strand, within MPMX19_00151at 160.546 kb on + strand, within MPMX19_00151at 160.547 kb on - strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.708 kb on + strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151at 160.709 kb on - strand, within MPMX19_00151

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
remove
158,352 - MPMX19_00147 0.54 -0.6
158,420 + MPMX19_00147 0.63 -2.2
158,420 + MPMX19_00147 0.63 -0.1
158,420 + MPMX19_00147 0.63 -0.1
158,421 - MPMX19_00147 0.63 -1.2
158,421 - MPMX19_00147 0.63 +0.1
158,421 - MPMX19_00147 0.63 -0.7
158,478 - MPMX19_00147 0.70 +0.1
158,478 - MPMX19_00147 0.70 -0.4
158,478 - MPMX19_00147 0.70 -1.4
158,478 - MPMX19_00147 0.70 -0.7
158,478 - MPMX19_00147 0.70 -1.5
158,478 - MPMX19_00147 0.70 +1.6
158,526 - MPMX19_00147 0.77 +0.4
158,526 - MPMX19_00147 0.77 -1.1
158,526 - MPMX19_00147 0.77 -0.7
158,526 - MPMX19_00147 0.77 -0.2
158,526 - MPMX19_00147 0.77 -1.3
158,526 - MPMX19_00147 0.77 -1.1
158,526 - MPMX19_00147 0.77 -1.3
158,526 - MPMX19_00147 0.77 +1.1
158,526 - MPMX19_00147 0.77 -1.1
158,526 - MPMX19_00147 0.77 -0.8
158,526 - MPMX19_00147 0.77 -1.8
158,526 - MPMX19_00147 0.77 +0.4
158,526 - MPMX19_00147 0.77 -0.4
158,526 - MPMX19_00147 0.77 -0.9
158,526 - MPMX19_00147 0.77 +0.5
158,582 + MPMX19_00147 0.84 -0.4
158,583 - MPMX19_00147 0.84 +1.2
158,583 - MPMX19_00147 0.84 -1.4
158,583 - MPMX19_00147 0.84 +0.1
158,731 + -1.6
158,731 + -1.4
158,732 - -0.6
158,732 - -0.3
158,732 - +1.0
158,732 - -0.5
158,787 + +0.4
158,787 + -0.6
158,787 + +0.9
158,787 + -1.5
158,787 + -0.8
158,788 - +0.5
158,788 - -0.2
158,788 - +2.4
158,788 - -0.8
158,788 - -1.9
158,788 - -1.1
158,788 - +0.4
158,986 + MPMX19_00148 0.38 -0.6
158,987 - MPMX19_00148 0.38 -2.3
158,987 - MPMX19_00148 0.38 +0.9
158,987 - MPMX19_00148 0.38 -1.1
159,344 + MPMX19_00149 0.11 -2.9
159,497 + MPMX19_00149 0.44 -0.5
159,497 + MPMX19_00149 0.44 -1.6
159,497 + MPMX19_00149 0.44 -2.4
159,498 - MPMX19_00149 0.44 -1.5
159,498 - MPMX19_00149 0.44 +1.1
159,498 - MPMX19_00149 0.44 +0.4
159,498 - MPMX19_00149 0.44 -0.5
159,498 - MPMX19_00149 0.44 -1.7
159,498 - MPMX19_00149 0.44 -1.7
159,498 - MPMX19_00149 0.44 -0.5
159,503 + MPMX19_00149 0.45 -0.1
159,503 + MPMX19_00149 0.45 -1.0
159,503 + MPMX19_00149 0.45 -0.7
159,582 - MPMX19_00149 0.62 -0.4
159,582 - MPMX19_00149 0.62 +0.3
159,611 + MPMX19_00149 0.68 -2.2
159,611 + MPMX19_00149 0.68 -1.6
159,612 - MPMX19_00149 0.68 -1.2
159,612 - MPMX19_00149 0.68 -0.8
159,612 - MPMX19_00149 0.68 -0.4
159,710 + MPMX19_00149 0.89 -0.8
159,710 + MPMX19_00149 0.89 -0.8
159,711 - MPMX19_00149 0.89 -1.0
159,713 - MPMX19_00149 0.89 -0.7
159,723 + -1.7
159,723 + -0.2
159,778 + +0.6
159,778 + -2.3
159,779 - -0.6
159,956 + MPMX19_00150 0.28 -0.8
159,956 + MPMX19_00150 0.28 -1.5
159,956 + MPMX19_00150 0.28 -0.8
159,956 + MPMX19_00150 0.28 -1.8
159,956 + MPMX19_00150 0.28 -0.9
159,956 + MPMX19_00150 0.28 -1.5
159,956 + MPMX19_00150 0.28 -1.8
159,956 + MPMX19_00150 0.28 -0.8
159,956 + MPMX19_00150 0.28 -1.7
159,957 - MPMX19_00150 0.28 -1.1
159,957 - MPMX19_00150 0.28 -1.6
159,957 - MPMX19_00150 0.28 -0.5
159,957 - MPMX19_00150 0.28 +0.4
159,957 - MPMX19_00150 0.28 -1.1
159,957 - MPMX19_00150 0.28 +0.8
159,957 - MPMX19_00150 0.28 +2.1
159,957 - MPMX19_00150 0.28 +0.1
159,957 - MPMX19_00150 0.28 -0.5
159,957 - MPMX19_00150 0.28 -0.8
159,957 - MPMX19_00150 0.28 +0.2
160,039 - MPMX19_00150 0.55 +0.1
160,229 + +0.3
160,229 + +0.4
160,229 + +0.2
160,229 + -0.8
160,229 + -0.8
160,229 + -0.1
160,229 + +0.4
160,230 - +0.6
160,230 - -0.3
160,230 - -1.5
160,230 - -0.5
160,230 - +0.3
160,230 - -0.3
160,230 - +0.4
160,288 + MPMX19_00151 0.12 -1.9
160,288 + MPMX19_00151 0.12 -1.3
160,289 - MPMX19_00151 0.12 -0.8
160,289 - MPMX19_00151 0.12 -1.4
160,402 + MPMX19_00151 0.24 -0.7
160,402 + MPMX19_00151 0.24 +1.1
160,402 + MPMX19_00151 0.24 -1.8
160,402 + MPMX19_00151 0.24 -0.1
160,402 + MPMX19_00151 0.24 -1.6
160,402 + MPMX19_00151 0.24 -0.7
160,403 - MPMX19_00151 0.24 -0.2
160,403 - MPMX19_00151 0.24 -0.8
160,403 - MPMX19_00151 0.24 +0.6
160,403 - MPMX19_00151 0.24 -2.4
160,403 - MPMX19_00151 0.24 -0.9
160,403 - MPMX19_00151 0.24 +0.3
160,403 - MPMX19_00151 0.24 -1.5
160,403 - MPMX19_00151 0.24 +0.3
160,403 - MPMX19_00151 0.24 +0.1
160,403 - MPMX19_00151 0.24 -0.9
160,403 - MPMX19_00151 0.24 -0.7
160,403 - MPMX19_00151 0.24 -0.2
160,403 - MPMX19_00151 0.24 -1.3
160,403 - MPMX19_00151 0.24 -0.2
160,403 - MPMX19_00151 0.24 +0.1
160,466 + MPMX19_00151 0.31 -0.3
160,466 + MPMX19_00151 0.31 -1.6
160,466 + MPMX19_00151 0.31 -0.5
160,466 + MPMX19_00151 0.31 -0.4
160,466 + MPMX19_00151 0.31 -2.3
160,467 - MPMX19_00151 0.31 -1.9
160,467 - MPMX19_00151 0.31 -0.9
160,467 - MPMX19_00151 0.31 -0.5
160,467 - MPMX19_00151 0.31 -0.4
160,467 - MPMX19_00151 0.31 -1.1
160,467 - MPMX19_00151 0.31 -0.9
160,546 + MPMX19_00151 0.40 +0.3
160,546 + MPMX19_00151 0.40 +1.8
160,546 + MPMX19_00151 0.40 +0.1
160,547 - MPMX19_00151 0.40 -1.1
160,708 + MPMX19_00151 0.57 -0.2
160,708 + MPMX19_00151 0.57 +0.0
160,708 + MPMX19_00151 0.57 -0.1
160,708 + MPMX19_00151 0.57 -1.0
160,708 + MPMX19_00151 0.57 +0.3
160,708 + MPMX19_00151 0.57 -1.4
160,708 + MPMX19_00151 0.57 -0.7
160,708 + MPMX19_00151 0.57 -0.1
160,708 + MPMX19_00151 0.57 -0.4
160,708 + MPMX19_00151 0.57 -0.4
160,708 + MPMX19_00151 0.57 +0.2
160,709 - MPMX19_00151 0.57 +1.0
160,709 - MPMX19_00151 0.57 -0.5
160,709 - MPMX19_00151 0.57 +1.0
160,709 - MPMX19_00151 0.57 -0.5
160,709 - MPMX19_00151 0.57 -0.9
160,709 - MPMX19_00151 0.57 +0.3
160,709 - MPMX19_00151 0.57 +0.1
160,709 - MPMX19_00151 0.57 +0.8
160,709 - MPMX19_00151 0.57 +0.2

Or see this region's nucleotide sequence