Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00122

Experiment: NL-CCM, start OD=0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00120 and MPMX19_00121 overlap by 4 nucleotidesMPMX19_00121 and MPMX19_00122 are separated by 64 nucleotidesMPMX19_00122 and MPMX19_00123 are separated by 55 nucleotides MPMX19_00120: MPMX19_00120 - hypothetical protein, at 133,106 to 133,690 _00120 MPMX19_00121: MPMX19_00121 - CTP pyrophosphohydrolase, at 133,687 to 134,130 _00121 MPMX19_00122: MPMX19_00122 - hypothetical protein, at 134,195 to 134,506 _00122 MPMX19_00123: MPMX19_00123 - ATP-dependent DNA helicase RecQ, at 134,562 to 136,475 _00123 Position (kb) 134 135Strain fitness (log2 ratio) -2 -1 0 1at 133.256 kb on + strand, within MPMX19_00120at 133.256 kb on + strand, within MPMX19_00120at 133.256 kb on + strand, within MPMX19_00120at 133.256 kb on + strand, within MPMX19_00120at 133.257 kb on - strand, within MPMX19_00120at 133.257 kb on - strand, within MPMX19_00120at 133.257 kb on - strand, within MPMX19_00120at 133.257 kb on - strand, within MPMX19_00120at 133.257 kb on - strand, within MPMX19_00120at 133.436 kb on + strand, within MPMX19_00120at 133.436 kb on + strand, within MPMX19_00120at 133.436 kb on + strand, within MPMX19_00120at 133.436 kb on + strand, within MPMX19_00120at 133.436 kb on + strand, within MPMX19_00120at 133.437 kb on - strand, within MPMX19_00120at 133.437 kb on - strand, within MPMX19_00120at 133.437 kb on - strand, within MPMX19_00120at 133.452 kb on - strand, within MPMX19_00120at 133.960 kb on + strand, within MPMX19_00121at 133.960 kb on + strand, within MPMX19_00121at 133.960 kb on + strand, within MPMX19_00121at 133.960 kb on + strand, within MPMX19_00121at 133.960 kb on + strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.961 kb on - strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.990 kb on + strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 133.991 kb on - strand, within MPMX19_00121at 134.053 kb on + strand, within MPMX19_00121at 134.053 kb on + strand, within MPMX19_00121at 134.054 kb on - strand, within MPMX19_00121at 134.128 kb on + strandat 134.128 kb on + strandat 134.128 kb on + strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.129 kb on - strandat 134.170 kb on + strandat 134.170 kb on + strandat 134.171 kb on - strandat 134.172 kb on + strandat 134.173 kb on - strandat 134.173 kb on - strandat 134.173 kb on - strandat 134.229 kb on + strand, within MPMX19_00122at 134.229 kb on + strand, within MPMX19_00122at 134.230 kb on - strand, within MPMX19_00122at 134.230 kb on - strand, within MPMX19_00122at 134.230 kb on - strand, within MPMX19_00122at 134.230 kb on - strand, within MPMX19_00122at 134.383 kb on - strand, within MPMX19_00122at 134.383 kb on - strand, within MPMX19_00122at 134.572 kb on - strandat 134.652 kb on + strandat 134.653 kb on - strandat 134.653 kb on - strandat 134.754 kb on + strand, within MPMX19_00123at 134.754 kb on + strand, within MPMX19_00123at 134.755 kb on - strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.943 kb on + strand, within MPMX19_00123at 134.944 kb on - strand, within MPMX19_00123at 134.944 kb on - strand, within MPMX19_00123at 134.944 kb on - strand, within MPMX19_00123at 134.944 kb on - strand, within MPMX19_00123at 134.944 kb on - strand, within MPMX19_00123at 134.944 kb on - strand, within MPMX19_00123at 134.944 kb on - strand, within MPMX19_00123at 134.944 kb on - strand, within MPMX19_00123at 134.944 kb on - strand, within MPMX19_00123at 135.069 kb on + strand, within MPMX19_00123at 135.069 kb on + strand, within MPMX19_00123at 135.069 kb on + strand, within MPMX19_00123at 135.069 kb on + strand, within MPMX19_00123at 135.070 kb on - strand, within MPMX19_00123at 135.228 kb on + strand, within MPMX19_00123at 135.228 kb on + strand, within MPMX19_00123at 135.229 kb on - strand, within MPMX19_00123at 135.229 kb on - strand, within MPMX19_00123at 135.229 kb on - strand, within MPMX19_00123at 135.229 kb on - strand, within MPMX19_00123at 135.229 kb on - strand, within MPMX19_00123at 135.229 kb on - strand, within MPMX19_00123at 135.229 kb on - strand, within MPMX19_00123at 135.312 kb on + strand, within MPMX19_00123at 135.312 kb on + strand, within MPMX19_00123at 135.312 kb on + strand, within MPMX19_00123at 135.312 kb on + strand, within MPMX19_00123at 135.312 kb on + strand, within MPMX19_00123at 135.312 kb on + strand, within MPMX19_00123at 135.312 kb on + strand, within MPMX19_00123at 135.312 kb on + strand, within MPMX19_00123at 135.312 kb on + strand, within MPMX19_00123at 135.312 kb on + strand, within MPMX19_00123at 135.312 kb on + strand, within MPMX19_00123at 135.313 kb on - strand, within MPMX19_00123at 135.313 kb on - strand, within MPMX19_00123at 135.313 kb on - strand, within MPMX19_00123at 135.313 kb on - strand, within MPMX19_00123at 135.313 kb on - strand, within MPMX19_00123at 135.313 kb on - strand, within MPMX19_00123at 135.313 kb on - strand, within MPMX19_00123at 135.313 kb on - strand, within MPMX19_00123at 135.313 kb on - strand, within MPMX19_00123at 135.313 kb on - strand, within MPMX19_00123at 135.313 kb on - strand, within MPMX19_00123at 135.384 kb on + strand, within MPMX19_00123at 135.384 kb on + strand, within MPMX19_00123at 135.384 kb on + strand, within MPMX19_00123at 135.385 kb on - strand, within MPMX19_00123at 135.385 kb on - strand, within MPMX19_00123at 135.385 kb on - strand, within MPMX19_00123

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1
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133,256 + MPMX19_00120 0.26 -2.2
133,256 + MPMX19_00120 0.26 -0.4
133,256 + MPMX19_00120 0.26 -1.2
133,256 + MPMX19_00120 0.26 -0.7
133,257 - MPMX19_00120 0.26 +0.3
133,257 - MPMX19_00120 0.26 -0.3
133,257 - MPMX19_00120 0.26 -0.7
133,257 - MPMX19_00120 0.26 -0.4
133,257 - MPMX19_00120 0.26 -0.8
133,436 + MPMX19_00120 0.56 -0.9
133,436 + MPMX19_00120 0.56 +0.9
133,436 + MPMX19_00120 0.56 -1.4
133,436 + MPMX19_00120 0.56 -0.1
133,436 + MPMX19_00120 0.56 +0.6
133,437 - MPMX19_00120 0.57 +0.2
133,437 - MPMX19_00120 0.57 +0.3
133,437 - MPMX19_00120 0.57 -0.6
133,452 - MPMX19_00120 0.59 -2.6
133,960 + MPMX19_00121 0.61 -2.7
133,960 + MPMX19_00121 0.61 -1.0
133,960 + MPMX19_00121 0.61 -1.5
133,960 + MPMX19_00121 0.61 +0.4
133,960 + MPMX19_00121 0.61 +0.2
133,961 - MPMX19_00121 0.62 +0.3
133,961 - MPMX19_00121 0.62 -0.5
133,961 - MPMX19_00121 0.62 +0.2
133,961 - MPMX19_00121 0.62 -1.7
133,961 - MPMX19_00121 0.62 +0.8
133,961 - MPMX19_00121 0.62 -1.1
133,961 - MPMX19_00121 0.62 -0.3
133,990 + MPMX19_00121 0.68 +0.3
133,990 + MPMX19_00121 0.68 -1.9
133,990 + MPMX19_00121 0.68 -0.3
133,990 + MPMX19_00121 0.68 -0.2
133,990 + MPMX19_00121 0.68 -0.7
133,990 + MPMX19_00121 0.68 -0.5
133,990 + MPMX19_00121 0.68 +0.1
133,990 + MPMX19_00121 0.68 -0.2
133,990 + MPMX19_00121 0.68 +0.9
133,990 + MPMX19_00121 0.68 -0.1
133,990 + MPMX19_00121 0.68 -0.2
133,990 + MPMX19_00121 0.68 -1.3
133,990 + MPMX19_00121 0.68 +0.2
133,990 + MPMX19_00121 0.68 -0.9
133,990 + MPMX19_00121 0.68 -0.0
133,990 + MPMX19_00121 0.68 +0.1
133,990 + MPMX19_00121 0.68 +0.3
133,990 + MPMX19_00121 0.68 +0.1
133,990 + MPMX19_00121 0.68 -1.5
133,990 + MPMX19_00121 0.68 -1.7
133,990 + MPMX19_00121 0.68 -0.6
133,990 + MPMX19_00121 0.68 -0.5
133,990 + MPMX19_00121 0.68 -0.1
133,990 + MPMX19_00121 0.68 -0.5
133,991 - MPMX19_00121 0.68 -2.1
133,991 - MPMX19_00121 0.68 -0.7
133,991 - MPMX19_00121 0.68 -0.9
133,991 - MPMX19_00121 0.68 -2.1
133,991 - MPMX19_00121 0.68 +0.1
133,991 - MPMX19_00121 0.68 -0.4
133,991 - MPMX19_00121 0.68 -0.2
133,991 - MPMX19_00121 0.68 +0.1
133,991 - MPMX19_00121 0.68 +1.1
133,991 - MPMX19_00121 0.68 -0.5
133,991 - MPMX19_00121 0.68 +0.8
133,991 - MPMX19_00121 0.68 +0.6
133,991 - MPMX19_00121 0.68 -0.1
133,991 - MPMX19_00121 0.68 -0.5
133,991 - MPMX19_00121 0.68 -0.2
133,991 - MPMX19_00121 0.68 -1.4
133,991 - MPMX19_00121 0.68 +1.6
133,991 - MPMX19_00121 0.68 -0.4
133,991 - MPMX19_00121 0.68 -0.1
133,991 - MPMX19_00121 0.68 +0.4
133,991 - MPMX19_00121 0.68 -0.6
134,053 + MPMX19_00121 0.82 -0.9
134,053 + MPMX19_00121 0.82 -0.7
134,054 - MPMX19_00121 0.83 -0.9
134,128 + +0.3
134,128 + -1.3
134,128 + -0.0
134,129 - -0.4
134,129 - +0.4
134,129 - +0.6
134,129 - -0.8
134,129 - -0.4
134,129 - -0.1
134,129 - -2.7
134,170 + -0.8
134,170 + -0.2
134,171 - -1.5
134,172 + -0.4
134,173 - -0.9
134,173 - -1.6
134,173 - -1.1
134,229 + MPMX19_00122 0.11 -1.7
134,229 + MPMX19_00122 0.11 +0.3
134,230 - MPMX19_00122 0.11 -1.5
134,230 - MPMX19_00122 0.11 -0.7
134,230 - MPMX19_00122 0.11 -1.2
134,230 - MPMX19_00122 0.11 -0.2
134,383 - MPMX19_00122 0.60 +0.3
134,383 - MPMX19_00122 0.60 -0.4
134,572 - -1.4
134,652 + -1.4
134,653 - +0.6
134,653 - -0.3
134,754 + MPMX19_00123 0.10 -0.5
134,754 + MPMX19_00123 0.10 -0.4
134,755 - MPMX19_00123 0.10 -0.6
134,943 + MPMX19_00123 0.20 -0.7
134,943 + MPMX19_00123 0.20 -1.9
134,943 + MPMX19_00123 0.20 +0.5
134,943 + MPMX19_00123 0.20 -0.4
134,943 + MPMX19_00123 0.20 +0.3
134,943 + MPMX19_00123 0.20 -0.4
134,943 + MPMX19_00123 0.20 +0.9
134,943 + MPMX19_00123 0.20 -1.2
134,943 + MPMX19_00123 0.20 +0.3
134,943 + MPMX19_00123 0.20 -1.2
134,943 + MPMX19_00123 0.20 -0.2
134,943 + MPMX19_00123 0.20 -1.2
134,943 + MPMX19_00123 0.20 +1.3
134,944 - MPMX19_00123 0.20 -0.5
134,944 - MPMX19_00123 0.20 +0.9
134,944 - MPMX19_00123 0.20 -1.0
134,944 - MPMX19_00123 0.20 +0.1
134,944 - MPMX19_00123 0.20 -1.3
134,944 - MPMX19_00123 0.20 -1.7
134,944 - MPMX19_00123 0.20 +1.1
134,944 - MPMX19_00123 0.20 -0.1
134,944 - MPMX19_00123 0.20 -2.1
135,069 + MPMX19_00123 0.26 -0.4
135,069 + MPMX19_00123 0.26 -1.2
135,069 + MPMX19_00123 0.26 +0.1
135,069 + MPMX19_00123 0.26 -0.9
135,070 - MPMX19_00123 0.27 -2.4
135,228 + MPMX19_00123 0.35 -0.9
135,228 + MPMX19_00123 0.35 -0.1
135,229 - MPMX19_00123 0.35 -0.1
135,229 - MPMX19_00123 0.35 +0.5
135,229 - MPMX19_00123 0.35 -0.2
135,229 - MPMX19_00123 0.35 +0.1
135,229 - MPMX19_00123 0.35 -0.9
135,229 - MPMX19_00123 0.35 +1.6
135,229 - MPMX19_00123 0.35 +1.3
135,312 + MPMX19_00123 0.39 -2.2
135,312 + MPMX19_00123 0.39 -0.2
135,312 + MPMX19_00123 0.39 -1.5
135,312 + MPMX19_00123 0.39 -0.9
135,312 + MPMX19_00123 0.39 +1.6
135,312 + MPMX19_00123 0.39 +0.5
135,312 + MPMX19_00123 0.39 +1.3
135,312 + MPMX19_00123 0.39 -1.5
135,312 + MPMX19_00123 0.39 -1.4
135,312 + MPMX19_00123 0.39 +0.5
135,312 + MPMX19_00123 0.39 -1.8
135,313 - MPMX19_00123 0.39 -0.4
135,313 - MPMX19_00123 0.39 +0.1
135,313 - MPMX19_00123 0.39 +0.9
135,313 - MPMX19_00123 0.39 +0.5
135,313 - MPMX19_00123 0.39 -1.2
135,313 - MPMX19_00123 0.39 +0.2
135,313 - MPMX19_00123 0.39 +0.6
135,313 - MPMX19_00123 0.39 +0.1
135,313 - MPMX19_00123 0.39 +0.5
135,313 - MPMX19_00123 0.39 -0.5
135,313 - MPMX19_00123 0.39 -1.7
135,384 + MPMX19_00123 0.43 -0.3
135,384 + MPMX19_00123 0.43 -0.7
135,384 + MPMX19_00123 0.43 +0.1
135,385 - MPMX19_00123 0.43 +0.1
135,385 - MPMX19_00123 0.43 +0.8
135,385 - MPMX19_00123 0.43 -1.7

Or see this region's nucleotide sequence