Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00101 and MPMX19_00102 are separated by 110 nucleotides MPMX19_00102 and MPMX19_00103 are separated by 300 nucleotides MPMX19_00103 and MPMX19_00104 are separated by 41 nucleotides
MPMX19_00101: MPMX19_00101 - Formyl-CoA:oxalate CoA-transferase, at 107,561 to 108,811
_00101
MPMX19_00102: MPMX19_00102 - hypothetical protein, at 108,922 to 109,395
_00102
MPMX19_00103: MPMX19_00103 - Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, at 109,696 to 110,946
_00103
MPMX19_00104: MPMX19_00104 - 2-oxoglutarate dehydrogenase E1 component, at 110,988 to 113,942
_00104
Position (kb)
109
110
111 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 108.787 kb on + strand at 108.787 kb on + strand at 108.787 kb on + strand at 108.787 kb on + strand at 108.787 kb on + strand at 108.788 kb on - strand at 108.788 kb on - strand at 108.788 kb on - strand at 108.788 kb on - strand at 108.788 kb on - strand at 108.788 kb on - strand at 108.788 kb on - strand at 108.828 kb on + strand at 108.828 kb on + strand at 108.828 kb on + strand at 108.828 kb on + strand at 108.829 kb on - strand at 108.829 kb on - strand at 108.829 kb on - strand at 108.829 kb on - strand at 108.829 kb on - strand at 108.829 kb on - strand at 108.829 kb on - strand at 108.829 kb on - strand at 108.829 kb on - strand at 109.143 kb on - strand, within MPMX19_00102 at 109.499 kb on - strand at 109.499 kb on - strand at 109.687 kb on + strand at 109.687 kb on + strand at 109.689 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 108,787 + -0.4 108,787 + -0.6 108,787 + +0.4 108,787 + +0.4 108,787 + -0.1 108,788 - +0.9 108,788 - -1.1 108,788 - +1.2 108,788 - -0.5 108,788 - -2.0 108,788 - -0.7 108,788 - -0.2 108,828 + -0.7 108,828 + -2.1 108,828 + -0.5 108,828 + -0.8 108,829 - -0.1 108,829 - -0.7 108,829 - -0.9 108,829 - -0.3 108,829 - +0.4 108,829 - -0.1 108,829 - -1.2 108,829 - -0.7 108,829 - -0.5 109,143 - MPMX19_00102 0.47 -0.4 109,499 - +0.4 109,499 - -0.4 109,687 + +1.0 109,687 + +0.1 109,689 + +3.0
Or see this region's nucleotide sequence