Experiment: NL-CCM, start OD=0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00059 and MPMX19_00060 are separated by 79 nucleotides MPMX19_00060 and MPMX19_00061 are separated by 10 nucleotides MPMX19_00061 and MPMX19_00062 are separated by 66 nucleotides
MPMX19_00059: MPMX19_00059 - hypothetical protein, at 62,975 to 63,505
_00059
MPMX19_00060: MPMX19_00060 - hypothetical protein, at 63,585 to 63,932
_00060
MPMX19_00061: MPMX19_00061 - L-lysine 2,3-aminomutase, at 63,943 to 64,980
_00061
MPMX19_00062: MPMX19_00062 - Glycerophosphodiester phosphodiesterase, cytoplasmic, at 65,047 to 65,790
_00062
Position (kb) 63
64
65 Strain fitness (log2 ratio) -2
-1
0
1
2 at 62.962 kb on + strand at 62.962 kb on + strand at 62.963 kb on - strand at 62.963 kb on - strand at 62.963 kb on - strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.990 kb on + strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 62.991 kb on - strand at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.266 kb on + strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.267 kb on - strand, within MPMX19_00059 at 63.287 kb on + strand, within MPMX19_00059 at 63.287 kb on + strand, within MPMX19_00059 at 63.287 kb on + strand, within MPMX19_00059 at 63.287 kb on + strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.288 kb on - strand, within MPMX19_00059 at 63.506 kb on + strand at 63.514 kb on + strand at 63.562 kb on + strand at 63.562 kb on + strand at 63.562 kb on + strand at 63.562 kb on + strand at 63.563 kb on - strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.584 kb on + strand at 63.585 kb on - strand at 63.585 kb on - strand at 63.585 kb on - strand at 63.585 kb on - strand at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.633 kb on + strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.634 kb on - strand, within MPMX19_00060 at 63.694 kb on + strand, within MPMX19_00060 at 63.694 kb on + strand, within MPMX19_00060 at 63.695 kb on - strand, within MPMX19_00060 at 63.954 kb on - strand at 64.067 kb on + strand, within MPMX19_00061 at 64.067 kb on + strand, within MPMX19_00061 at 64.067 kb on + strand, within MPMX19_00061 at 64.185 kb on - strand, within MPMX19_00061 at 64.185 kb on - strand, within MPMX19_00061 at 64.185 kb on - strand, within MPMX19_00061 at 64.584 kb on - strand, within MPMX19_00061 at 64.667 kb on + strand, within MPMX19_00061 at 64.788 kb on - strand, within MPMX19_00061 at 64.811 kb on + strand, within MPMX19_00061 at 64.811 kb on + strand, within MPMX19_00061 at 64.812 kb on - strand, within MPMX19_00061 at 64.812 kb on - strand, within MPMX19_00061 at 64.812 kb on - strand, within MPMX19_00061 at 64.820 kb on + strand, within MPMX19_00061 at 64.821 kb on - strand, within MPMX19_00061 at 64.821 kb on - strand, within MPMX19_00061 at 64.952 kb on - strand at 64.952 kb on - strand at 64.952 kb on - strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.013 kb on + strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.014 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.032 kb on - strand at 65.223 kb on + strand, within MPMX19_00062 at 65.543 kb on - strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.680 kb on + strand, within MPMX19_00062 at 65.681 kb on - strand, within MPMX19_00062 at 65.681 kb on - strand, within MPMX19_00062 at 65.681 kb on - strand, within MPMX19_00062 at 65.681 kb on - strand, within MPMX19_00062 at 65.827 kb on - strand at 65.827 kb on - strand at 65.827 kb on - strand at 65.827 kb on - strand at 65.827 kb on - strand at 65.917 kb on + strand at 65.917 kb on + strand at 65.917 kb on + strand at 65.917 kb on + strand at 65.919 kb on + strand at 65.919 kb on + strand at 65.919 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand at 65.921 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.1 remove 62,962 + -1.2 62,962 + +0.4 62,963 - -0.5 62,963 - +0.1 62,963 - +0.1 62,990 + -0.4 62,990 + -0.2 62,990 + +0.2 62,990 + +0.3 62,990 + +1.2 62,990 + -0.1 62,990 + +0.1 62,990 + +0.3 62,990 + -0.5 62,990 + -0.5 62,990 + +2.1 62,990 + +0.1 62,990 + -1.2 62,990 + +0.1 62,990 + +0.3 62,990 + +0.6 62,990 + +0.4 62,991 - +0.2 62,991 - -0.2 62,991 - -0.1 62,991 - -1.9 62,991 - +0.7 62,991 - -0.7 62,991 - +0.2 62,991 - -0.1 62,991 - +0.6 62,991 - -0.9 62,991 - +0.1 63,266 + MPMX19_00059 0.55 +0.1 63,266 + MPMX19_00059 0.55 +0.1 63,266 + MPMX19_00059 0.55 -0.4 63,266 + MPMX19_00059 0.55 +1.3 63,266 + MPMX19_00059 0.55 +0.1 63,266 + MPMX19_00059 0.55 +0.8 63,266 + MPMX19_00059 0.55 -0.5 63,266 + MPMX19_00059 0.55 +1.1 63,266 + MPMX19_00059 0.55 -1.4 63,266 + MPMX19_00059 0.55 -0.8 63,266 + MPMX19_00059 0.55 +0.3 63,266 + MPMX19_00059 0.55 -0.5 63,266 + MPMX19_00059 0.55 +2.2 63,266 + MPMX19_00059 0.55 -1.1 63,266 + MPMX19_00059 0.55 -0.4 63,266 + MPMX19_00059 0.55 -0.0 63,266 + MPMX19_00059 0.55 +1.1 63,266 + MPMX19_00059 0.55 -1.2 63,266 + MPMX19_00059 0.55 -0.7 63,266 + MPMX19_00059 0.55 -0.7 63,266 + MPMX19_00059 0.55 -0.4 63,267 - MPMX19_00059 0.55 +0.6 63,267 - MPMX19_00059 0.55 -0.6 63,267 - MPMX19_00059 0.55 +0.1 63,267 - MPMX19_00059 0.55 -0.5 63,267 - MPMX19_00059 0.55 -0.4 63,267 - MPMX19_00059 0.55 -0.6 63,267 - MPMX19_00059 0.55 -0.5 63,267 - MPMX19_00059 0.55 -0.4 63,267 - MPMX19_00059 0.55 -0.4 63,267 - MPMX19_00059 0.55 +0.2 63,267 - MPMX19_00059 0.55 +0.1 63,267 - MPMX19_00059 0.55 +0.1 63,267 - MPMX19_00059 0.55 -1.3 63,267 - MPMX19_00059 0.55 +1.2 63,267 - MPMX19_00059 0.55 -0.7 63,267 - MPMX19_00059 0.55 -2.2 63,267 - MPMX19_00059 0.55 +0.1 63,267 - MPMX19_00059 0.55 +0.6 63,267 - MPMX19_00059 0.55 +0.4 63,287 + MPMX19_00059 0.59 -0.7 63,287 + MPMX19_00059 0.59 +1.8 63,287 + MPMX19_00059 0.59 +0.6 63,287 + MPMX19_00059 0.59 -0.2 63,288 - MPMX19_00059 0.59 -1.2 63,288 - MPMX19_00059 0.59 -1.9 63,288 - MPMX19_00059 0.59 -1.4 63,288 - MPMX19_00059 0.59 +0.6 63,288 - MPMX19_00059 0.59 -0.1 63,288 - MPMX19_00059 0.59 +0.2 63,288 - MPMX19_00059 0.59 -0.3 63,506 + -1.7 63,514 + +0.2 63,562 + -1.7 63,562 + +0.5 63,562 + -0.6 63,562 + +0.6 63,563 - -0.3 63,584 + +0.9 63,584 + -0.4 63,584 + -0.9 63,584 + -1.3 63,584 + -0.3 63,584 + -0.2 63,584 + +0.1 63,584 + +0.2 63,584 + +0.7 63,585 - -1.9 63,585 - -0.6 63,585 - +1.2 63,585 - -0.2 63,633 + MPMX19_00060 0.14 +0.2 63,633 + MPMX19_00060 0.14 -0.7 63,633 + MPMX19_00060 0.14 +0.9 63,633 + MPMX19_00060 0.14 -1.5 63,633 + MPMX19_00060 0.14 -1.3 63,633 + MPMX19_00060 0.14 -0.9 63,633 + MPMX19_00060 0.14 +0.9 63,633 + MPMX19_00060 0.14 -1.6 63,633 + MPMX19_00060 0.14 -0.6 63,634 - MPMX19_00060 0.14 +0.4 63,634 - MPMX19_00060 0.14 +0.5 63,634 - MPMX19_00060 0.14 -0.1 63,634 - MPMX19_00060 0.14 -1.5 63,634 - MPMX19_00060 0.14 -0.7 63,634 - MPMX19_00060 0.14 +0.7 63,634 - MPMX19_00060 0.14 +0.0 63,634 - MPMX19_00060 0.14 +0.6 63,634 - MPMX19_00060 0.14 -0.9 63,634 - MPMX19_00060 0.14 -0.3 63,694 + MPMX19_00060 0.31 +0.1 63,694 + MPMX19_00060 0.31 +0.1 63,695 - MPMX19_00060 0.32 +0.3 63,954 - +1.3 64,067 + MPMX19_00061 0.12 -1.2 64,067 + MPMX19_00061 0.12 -0.7 64,067 + MPMX19_00061 0.12 -1.9 64,185 - MPMX19_00061 0.23 +1.6 64,185 - MPMX19_00061 0.23 -1.7 64,185 - MPMX19_00061 0.23 +0.2 64,584 - MPMX19_00061 0.62 +0.1 64,667 + MPMX19_00061 0.70 -1.5 64,788 - MPMX19_00061 0.81 +0.3 64,811 + MPMX19_00061 0.84 -0.7 64,811 + MPMX19_00061 0.84 +1.3 64,812 - MPMX19_00061 0.84 -1.2 64,812 - MPMX19_00061 0.84 +0.9 64,812 - MPMX19_00061 0.84 -1.4 64,820 + MPMX19_00061 0.84 -1.3 64,821 - MPMX19_00061 0.85 -0.4 64,821 - MPMX19_00061 0.85 +1.1 64,952 - -0.0 64,952 - +0.6 64,952 - +1.9 65,013 + -1.3 65,013 + -1.2 65,013 + -0.1 65,013 + +0.6 65,013 + +0.4 65,013 + -1.3 65,013 + -0.4 65,013 + -2.7 65,013 + -0.4 65,013 + -0.2 65,013 + -0.5 65,013 + +0.7 65,014 - -1.1 65,014 - +1.2 65,014 - -0.5 65,014 - -0.1 65,014 - +0.0 65,014 - -1.6 65,014 - -0.6 65,014 - -1.2 65,014 - +0.8 65,014 - +0.5 65,014 - -0.4 65,014 - +0.2 65,014 - -1.2 65,014 - -0.7 65,014 - +0.3 65,014 - +1.4 65,014 - +1.0 65,014 - +1.2 65,014 - -0.3 65,014 - -0.5 65,014 - -0.1 65,014 - -0.1 65,032 - -0.4 65,032 - -1.2 65,032 - -0.5 65,032 - -0.5 65,032 - +0.8 65,032 - -1.4 65,032 - -0.7 65,032 - +0.1 65,223 + MPMX19_00062 0.24 -0.9 65,543 - MPMX19_00062 0.67 -1.4 65,680 + MPMX19_00062 0.85 +0.2 65,680 + MPMX19_00062 0.85 +0.1 65,680 + MPMX19_00062 0.85 +0.5 65,680 + MPMX19_00062 0.85 +0.2 65,680 + MPMX19_00062 0.85 -1.2 65,680 + MPMX19_00062 0.85 +0.5 65,680 + MPMX19_00062 0.85 -2.5 65,681 - MPMX19_00062 0.85 -1.2 65,681 - MPMX19_00062 0.85 +1.3 65,681 - MPMX19_00062 0.85 -0.9 65,681 - MPMX19_00062 0.85 -1.9 65,827 - -0.4 65,827 - -0.8 65,827 - +0.9 65,827 - -0.4 65,827 - -0.7 65,917 + -0.5 65,917 + +0.1 65,917 + -0.7 65,917 + +0.1 65,919 + -2.3 65,919 + +0.2 65,919 + +0.1 65,921 + +0.6 65,921 + +0.9 65,921 + -0.2 65,921 + -1.1 65,921 + -0.2 65,921 + +0.2 65,921 + +0.5 65,921 + -0.4 65,921 + -0.6 65,921 + -0.5
Or see this region's nucleotide sequence