Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF890 and GFF891 are separated by 218 nucleotides GFF891 and GFF892 are separated by 250 nucleotides GFF892 and GFF893 are separated by 82 nucleotides GFF893 and GFF894 are separated by 4 nucleotides
GFF890 - hypothetical protein, at 226,578 to 227,033
GFF890
GFF891 - Translational regulator CsrA1, at 227,252 to 227,446
GFF891
GFF892 - hypothetical protein, at 227,697 to 228,062
GFF892
GFF893 - Extracellular deoxyribonuclease, at 228,145 to 228,834
GFF893
GFF894 - hypothetical protein, at 228,839 to 229,078
GFF894
Position (kb) 227
228
229 Strain fitness (log2 ratio) -2
-1
0
1
2 at 226.748 kb on + strand, within GFF890 at 226.749 kb on - strand, within GFF890 at 226.749 kb on - strand, within GFF890 at 226.779 kb on + strand, within GFF890 at 226.798 kb on - strand, within GFF890 at 226.798 kb on - strand, within GFF890 at 226.800 kb on + strand, within GFF890 at 226.801 kb on - strand, within GFF890 at 226.849 kb on + strand, within GFF890 at 226.850 kb on - strand, within GFF890 at 226.850 kb on - strand, within GFF890 at 226.850 kb on - strand, within GFF890 at 226.850 kb on - strand, within GFF890 at 226.850 kb on - strand, within GFF890 at 226.852 kb on + strand, within GFF890 at 226.852 kb on + strand, within GFF890 at 226.852 kb on + strand, within GFF890 at 226.853 kb on - strand, within GFF890 at 226.853 kb on - strand, within GFF890 at 226.853 kb on - strand, within GFF890 at 226.853 kb on - strand, within GFF890 at 226.944 kb on + strand, within GFF890 at 226.945 kb on - strand, within GFF890 at 226.945 kb on - strand, within GFF890 at 226.945 kb on - strand, within GFF890 at 227.024 kb on - strand at 227.024 kb on - strand at 227.032 kb on - strand at 227.032 kb on - strand at 227.094 kb on + strand at 227.094 kb on + strand at 227.095 kb on - strand at 227.097 kb on + strand at 227.182 kb on + strand at 227.182 kb on + strand at 227.235 kb on - strand at 227.238 kb on + strand at 227.238 kb on + strand at 227.239 kb on - strand at 227.239 kb on - strand at 227.438 kb on + strand at 227.439 kb on - strand at 227.469 kb on + strand at 227.505 kb on + strand at 227.505 kb on + strand at 227.505 kb on + strand at 227.505 kb on + strand at 227.505 kb on + strand at 227.505 kb on + strand at 227.506 kb on - strand at 227.506 kb on - strand at 227.506 kb on - strand at 227.506 kb on - strand at 227.506 kb on - strand at 227.506 kb on - strand at 227.509 kb on + strand at 227.510 kb on - strand at 227.510 kb on - strand at 227.510 kb on - strand at 227.510 kb on - strand at 227.510 kb on - strand at 227.510 kb on - strand at 227.511 kb on + strand at 227.511 kb on + strand at 227.511 kb on + strand at 227.512 kb on - strand at 227.512 kb on - strand at 227.512 kb on - strand at 227.512 kb on - strand at 227.512 kb on - strand at 227.512 kb on - strand at 227.512 kb on - strand at 227.517 kb on - strand at 227.517 kb on - strand at 227.517 kb on - strand at 227.517 kb on - strand at 227.569 kb on + strand at 227.583 kb on + strand at 227.583 kb on + strand at 227.583 kb on + strand at 227.584 kb on - strand at 227.584 kb on - strand at 227.584 kb on - strand at 227.587 kb on + strand at 227.587 kb on + strand at 227.587 kb on + strand at 227.587 kb on + strand at 227.587 kb on + strand at 227.587 kb on + strand at 227.587 kb on + strand at 227.587 kb on + strand at 227.588 kb on - strand at 227.588 kb on - strand at 227.588 kb on - strand at 227.588 kb on - strand at 227.588 kb on - strand at 227.588 kb on - strand at 227.588 kb on - strand at 227.588 kb on - strand at 227.588 kb on - strand at 227.589 kb on + strand at 227.589 kb on + strand at 227.589 kb on + strand at 227.590 kb on - strand at 227.590 kb on - strand at 227.590 kb on - strand at 227.590 kb on - strand at 227.590 kb on - strand at 227.662 kb on - strand at 227.662 kb on - strand at 227.662 kb on - strand at 227.662 kb on - strand at 227.662 kb on - strand at 227.761 kb on + strand, within GFF892 at 227.761 kb on + strand, within GFF892 at 227.761 kb on + strand, within GFF892 at 227.761 kb on + strand, within GFF892 at 227.761 kb on + strand, within GFF892 at 227.762 kb on - strand, within GFF892 at 227.762 kb on - strand, within GFF892 at 227.762 kb on - strand, within GFF892 at 227.762 kb on - strand, within GFF892 at 227.925 kb on - strand, within GFF892 at 228.024 kb on - strand, within GFF892 at 228.024 kb on - strand, within GFF892 at 228.096 kb on + strand at 228.097 kb on - strand at 228.097 kb on - strand at 228.131 kb on + strand at 228.132 kb on - strand at 228.166 kb on + strand at 228.248 kb on + strand, within GFF893 at 228.249 kb on - strand, within GFF893 at 228.249 kb on - strand, within GFF893 at 228.269 kb on + strand, within GFF893 at 228.269 kb on + strand, within GFF893 at 228.306 kb on - strand, within GFF893 at 228.318 kb on + strand, within GFF893 at 228.319 kb on - strand, within GFF893 at 228.320 kb on + strand, within GFF893 at 228.321 kb on - strand, within GFF893 at 228.321 kb on - strand, within GFF893 at 228.410 kb on + strand, within GFF893 at 228.410 kb on + strand, within GFF893 at 228.410 kb on + strand, within GFF893 at 228.410 kb on + strand, within GFF893 at 228.411 kb on - strand, within GFF893 at 228.411 kb on - strand, within GFF893 at 228.441 kb on - strand, within GFF893 at 228.653 kb on + strand, within GFF893 at 228.653 kb on + strand, within GFF893 at 228.653 kb on + strand, within GFF893 at 228.653 kb on + strand, within GFF893 at 228.654 kb on - strand, within GFF893 at 228.654 kb on - strand, within GFF893 at 228.654 kb on - strand, within GFF893 at 228.689 kb on + strand, within GFF893 at 228.690 kb on - strand, within GFF893 at 228.690 kb on - strand, within GFF893 at 228.705 kb on - strand, within GFF893 at 228.728 kb on + strand, within GFF893 at 228.728 kb on + strand, within GFF893 at 228.729 kb on - strand, within GFF893 at 228.765 kb on + strand, within GFF893 at 228.766 kb on - strand at 228.766 kb on - strand at 229.034 kb on - strand, within GFF894 at 229.047 kb on + strand, within GFF894 at 229.047 kb on + strand, within GFF894 at 229.047 kb on + strand, within GFF894
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 226,748 + GFF890 0.37 -0.5 226,749 - GFF890 0.38 +1.3 226,749 - GFF890 0.38 -0.3 226,779 + GFF890 0.44 +0.1 226,798 - GFF890 0.48 -0.1 226,798 - GFF890 0.48 -0.2 226,800 + GFF890 0.49 +0.0 226,801 - GFF890 0.49 +0.6 226,849 + GFF890 0.59 -0.8 226,850 - GFF890 0.60 -0.1 226,850 - GFF890 0.60 -0.6 226,850 - GFF890 0.60 +0.8 226,850 - GFF890 0.60 -0.1 226,850 - GFF890 0.60 -0.2 226,852 + GFF890 0.60 -1.2 226,852 + GFF890 0.60 +0.5 226,852 + GFF890 0.60 +1.2 226,853 - GFF890 0.60 -0.9 226,853 - GFF890 0.60 -1.3 226,853 - GFF890 0.60 -0.5 226,853 - GFF890 0.60 +1.6 226,944 + GFF890 0.80 -0.8 226,945 - GFF890 0.80 -0.3 226,945 - GFF890 0.80 +1.5 226,945 - GFF890 0.80 +0.4 227,024 - +1.0 227,024 - +0.5 227,032 - -0.2 227,032 - -0.0 227,094 + +0.8 227,094 + +0.5 227,095 - +0.3 227,097 + +0.3 227,182 + +0.0 227,182 + -0.8 227,235 - -1.4 227,238 + +0.3 227,238 + -0.3 227,239 - -0.3 227,239 - +1.0 227,438 + -0.4 227,439 - +0.9 227,469 + +0.3 227,505 + -0.7 227,505 + -1.1 227,505 + +0.5 227,505 + -0.1 227,505 + +0.2 227,505 + -0.7 227,506 - +0.0 227,506 - -0.1 227,506 - -0.1 227,506 - -0.7 227,506 - -0.3 227,506 - +0.4 227,509 + +0.5 227,510 - +1.5 227,510 - -0.2 227,510 - +0.4 227,510 - -0.4 227,510 - -0.5 227,510 - +0.3 227,511 + +0.4 227,511 + -0.5 227,511 + -0.2 227,512 - -0.6 227,512 - +0.3 227,512 - +1.2 227,512 - -0.2 227,512 - +0.6 227,512 - -0.3 227,512 - -0.6 227,517 - -0.2 227,517 - +0.5 227,517 - -0.4 227,517 - +0.1 227,569 + -0.3 227,583 + -0.6 227,583 + -0.4 227,583 + -0.7 227,584 - -0.3 227,584 - +0.3 227,584 - +1.0 227,587 + +0.8 227,587 + +1.0 227,587 + +0.6 227,587 + -0.1 227,587 + +0.0 227,587 + -0.8 227,587 + +0.0 227,587 + +0.1 227,588 - +1.5 227,588 - -0.6 227,588 - -0.1 227,588 - +0.1 227,588 - +1.3 227,588 - +0.2 227,588 - -0.1 227,588 - -0.3 227,588 - -0.5 227,589 + -0.7 227,589 + -1.3 227,589 + -0.9 227,590 - +0.7 227,590 - -0.2 227,590 - -0.5 227,590 - -1.2 227,590 - -0.2 227,662 - +0.2 227,662 - +0.2 227,662 - -0.1 227,662 - +0.6 227,662 - -0.1 227,761 + GFF892 0.17 +0.4 227,761 + GFF892 0.17 +1.5 227,761 + GFF892 0.17 -1.0 227,761 + GFF892 0.17 +0.3 227,761 + GFF892 0.17 -1.2 227,762 - GFF892 0.18 +0.3 227,762 - GFF892 0.18 +0.8 227,762 - GFF892 0.18 +0.9 227,762 - GFF892 0.18 +0.5 227,925 - GFF892 0.62 +2.5 228,024 - GFF892 0.89 -0.1 228,024 - GFF892 0.89 -0.6 228,096 + -0.3 228,097 - +0.1 228,097 - -0.2 228,131 + +0.8 228,132 - +0.5 228,166 + +0.3 228,248 + GFF893 0.15 +1.5 228,249 - GFF893 0.15 +0.2 228,249 - GFF893 0.15 -0.5 228,269 + GFF893 0.18 -0.0 228,269 + GFF893 0.18 +1.4 228,306 - GFF893 0.23 +0.4 228,318 + GFF893 0.25 +0.2 228,319 - GFF893 0.25 +0.9 228,320 + GFF893 0.25 -0.8 228,321 - GFF893 0.26 +0.6 228,321 - GFF893 0.26 -1.7 228,410 + GFF893 0.38 +0.4 228,410 + GFF893 0.38 +0.6 228,410 + GFF893 0.38 -0.9 228,410 + GFF893 0.38 -0.3 228,411 - GFF893 0.39 -1.0 228,411 - GFF893 0.39 +0.4 228,441 - GFF893 0.43 +0.0 228,653 + GFF893 0.74 -0.5 228,653 + GFF893 0.74 -0.6 228,653 + GFF893 0.74 -2.1 228,653 + GFF893 0.74 +0.4 228,654 - GFF893 0.74 +0.8 228,654 - GFF893 0.74 +1.1 228,654 - GFF893 0.74 +0.2 228,689 + GFF893 0.79 +0.2 228,690 - GFF893 0.79 +0.3 228,690 - GFF893 0.79 +0.3 228,705 - GFF893 0.81 -0.2 228,728 + GFF893 0.84 +1.0 228,728 + GFF893 0.84 +0.5 228,729 - GFF893 0.85 -0.1 228,765 + GFF893 0.90 -0.1 228,766 - +0.0 228,766 - +0.0 229,034 - GFF894 0.81 -0.1 229,047 + GFF894 0.87 +0.2 229,047 + GFF894 0.87 -1.6 229,047 + GFF894 0.87 -0.5
Or see this region's nucleotide sequence