Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF823 and GFF824 are separated by 55 nucleotides GFF824 and GFF825 overlap by 4 nucleotides GFF825 and GFF826 overlap by 4 nucleotides GFF826 and GFF827 overlap by 4 nucleotides GFF827 and GFF828 overlap by 4 nucleotides GFF828 and GFF829 are separated by 195 nucleotides GFF829 and GFF830 are separated by 156 nucleotides
GFF823 - hypothetical protein, at 179,722 to 180,528
GFF823
GFF824 - hypothetical protein, at 180,584 to 180,700
GFF824
GFF825 - hypothetical protein, at 180,697 to 180,822
GFF825
GFF826 - hypothetical protein, at 180,819 to 181,013
GFF826
GFF827 - hypothetical protein, at 181,010 to 181,243
GFF827
GFF828 - hypothetical protein, at 181,240 to 181,476
GFF828
GFF829 - hypothetical protein, at 181,672 to 182,022
GFF829
GFF830 - hypothetical protein, at 182,179 to 182,376
GFF830
Position (kb) 181
182 Strain fitness (log2 ratio) -2
-1
0
1
2 at 180.116 kb on + strand, within GFF823 at 180.117 kb on - strand, within GFF823 at 180.117 kb on - strand, within GFF823 at 180.206 kb on + strand, within GFF823 at 180.207 kb on - strand, within GFF823 at 180.207 kb on - strand, within GFF823 at 180.268 kb on - strand, within GFF823 at 180.275 kb on + strand, within GFF823 at 180.276 kb on - strand, within GFF823 at 180.306 kb on - strand, within GFF823 at 180.529 kb on + strand at 180.529 kb on + strand at 180.585 kb on + strand at 180.634 kb on - strand, within GFF824 at 180.713 kb on + strand, within GFF825 at 180.713 kb on + strand, within GFF825 at 180.713 kb on + strand, within GFF825 at 180.713 kb on + strand, within GFF825 at 180.713 kb on + strand, within GFF825 at 180.713 kb on + strand, within GFF825 at 180.714 kb on - strand, within GFF825 at 180.714 kb on - strand, within GFF825 at 180.714 kb on - strand, within GFF825 at 180.714 kb on - strand, within GFF825 at 180.810 kb on - strand at 181.044 kb on + strand, within GFF827 at 181.044 kb on + strand, within GFF827 at 181.044 kb on + strand, within GFF827 at 181.044 kb on + strand, within GFF827 at 181.044 kb on + strand, within GFF827 at 181.045 kb on - strand, within GFF827 at 181.054 kb on - strand, within GFF827 at 181.463 kb on + strand at 181.463 kb on + strand at 181.464 kb on - strand at 181.464 kb on - strand at 181.464 kb on - strand at 181.591 kb on + strand at 181.592 kb on - strand at 181.594 kb on + strand at 181.594 kb on + strand at 181.595 kb on - strand at 181.595 kb on - strand at 181.595 kb on - strand at 181.595 kb on - strand at 181.627 kb on + strand at 181.650 kb on + strand at 181.651 kb on - strand at 181.726 kb on + strand, within GFF829 at 181.726 kb on + strand, within GFF829 at 181.726 kb on + strand, within GFF829 at 181.726 kb on + strand, within GFF829 at 181.726 kb on + strand, within GFF829 at 181.727 kb on - strand, within GFF829 at 181.727 kb on - strand, within GFF829 at 181.727 kb on - strand, within GFF829 at 181.727 kb on - strand, within GFF829 at 181.782 kb on + strand, within GFF829 at 181.833 kb on + strand, within GFF829 at 181.834 kb on - strand, within GFF829 at 181.834 kb on - strand, within GFF829 at 181.834 kb on - strand, within GFF829 at 181.911 kb on + strand, within GFF829 at 181.911 kb on + strand, within GFF829 at 181.911 kb on + strand, within GFF829 at 181.911 kb on + strand, within GFF829 at 181.911 kb on + strand, within GFF829 at 181.911 kb on + strand, within GFF829 at 182.020 kb on + strand at 182.020 kb on + strand at 182.020 kb on + strand at 182.020 kb on + strand at 182.021 kb on - strand at 182.075 kb on + strand at 182.077 kb on + strand at 182.078 kb on - strand at 182.078 kb on - strand at 182.124 kb on + strand at 182.125 kb on - strand at 182.125 kb on - strand at 182.125 kb on - strand at 182.142 kb on + strand at 182.182 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 180,116 + GFF823 0.49 -0.2 180,117 - GFF823 0.49 -0.1 180,117 - GFF823 0.49 -1.2 180,206 + GFF823 0.60 +2.1 180,207 - GFF823 0.60 -0.5 180,207 - GFF823 0.60 -0.0 180,268 - GFF823 0.68 +0.0 180,275 + GFF823 0.69 +0.5 180,276 - GFF823 0.69 +0.6 180,306 - GFF823 0.72 +0.5 180,529 + -0.0 180,529 + -0.2 180,585 + +0.5 180,634 - GFF824 0.43 -0.3 180,713 + GFF825 0.13 +1.1 180,713 + GFF825 0.13 -0.6 180,713 + GFF825 0.13 -0.1 180,713 + GFF825 0.13 +0.3 180,713 + GFF825 0.13 -2.4 180,713 + GFF825 0.13 +0.9 180,714 - GFF825 0.13 +1.0 180,714 - GFF825 0.13 -0.2 180,714 - GFF825 0.13 -0.9 180,714 - GFF825 0.13 -1.0 180,810 - -1.2 181,044 + GFF827 0.15 +0.3 181,044 + GFF827 0.15 +0.1 181,044 + GFF827 0.15 -0.3 181,044 + GFF827 0.15 +0.9 181,044 + GFF827 0.15 +0.8 181,045 - GFF827 0.15 +0.9 181,054 - GFF827 0.19 +0.3 181,463 + -0.1 181,463 + -1.8 181,464 - -1.7 181,464 - +1.1 181,464 - +1.2 181,591 + +1.2 181,592 - +0.4 181,594 + -0.7 181,594 + +0.4 181,595 - +0.9 181,595 - +0.1 181,595 - +1.0 181,595 - +0.4 181,627 + +0.8 181,650 + -0.6 181,651 - -1.0 181,726 + GFF829 0.15 -0.7 181,726 + GFF829 0.15 -0.9 181,726 + GFF829 0.15 -1.1 181,726 + GFF829 0.15 -0.0 181,726 + GFF829 0.15 -0.4 181,727 - GFF829 0.16 -0.7 181,727 - GFF829 0.16 +0.2 181,727 - GFF829 0.16 +1.1 181,727 - GFF829 0.16 +0.2 181,782 + GFF829 0.31 +0.2 181,833 + GFF829 0.46 +1.7 181,834 - GFF829 0.46 +0.7 181,834 - GFF829 0.46 +0.5 181,834 - GFF829 0.46 +0.1 181,911 + GFF829 0.68 -1.1 181,911 + GFF829 0.68 -0.2 181,911 + GFF829 0.68 -0.8 181,911 + GFF829 0.68 +0.1 181,911 + GFF829 0.68 +0.9 181,911 + GFF829 0.68 -1.1 182,020 + +0.1 182,020 + +1.7 182,020 + +0.3 182,020 + +1.0 182,021 - -0.4 182,075 + -1.2 182,077 + -1.1 182,078 - -0.2 182,078 - +1.3 182,124 + +0.5 182,125 - +0.2 182,125 - -0.2 182,125 - +1.7 182,142 + +0.9 182,182 + -1.1
Or see this region's nucleotide sequence