Strain Fitness in Pseudomonas sp. DMC3 around GFF635

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF634 and GFF635 are separated by 66 nucleotidesGFF635 and GFF636 overlap by 1 nucleotidesGFF636 and GFF637 overlap by 8 nucleotides GFF634 - High-affinity zinc uptake system protein ZnuA, at 705,793 to 706,713 GFF634 GFF635 - Zinc uptake regulation protein, at 706,780 to 707,262 GFF635 GFF636 - Zinc import ATP-binding protein ZnuC, at 707,262 to 708,047 GFF636 GFF637 - High-affinity zinc uptake system membrane protein ZnuB, at 708,040 to 708,828 GFF637 Position (kb) 706 707 708Strain fitness (log2 ratio) -2 -1 0 1 2at 705.794 kb on + strandat 705.794 kb on + strandat 705.794 kb on + strandat 705.795 kb on - strandat 705.795 kb on - strandat 705.795 kb on - strandat 705.851 kb on + strandat 705.852 kb on - strandat 705.982 kb on + strand, within GFF634at 705.983 kb on - strand, within GFF634at 706.034 kb on - strand, within GFF634at 706.034 kb on - strand, within GFF634at 706.091 kb on + strand, within GFF634at 706.118 kb on + strand, within GFF634at 706.118 kb on + strand, within GFF634at 706.510 kb on + strand, within GFF634at 706.510 kb on + strand, within GFF634at 706.511 kb on - strand, within GFF634at 706.511 kb on - strand, within GFF634at 706.532 kb on + strand, within GFF634at 706.532 kb on + strand, within GFF634at 706.533 kb on - strand, within GFF634at 706.533 kb on - strand, within GFF634at 706.533 kb on - strand, within GFF634at 706.747 kb on + strandat 706.747 kb on + strandat 706.747 kb on + strandat 706.748 kb on - strandat 706.748 kb on - strandat 706.785 kb on + strandat 706.785 kb on + strandat 706.785 kb on + strandat 706.785 kb on + strandat 706.785 kb on + strandat 706.785 kb on + strandat 706.786 kb on - strandat 706.786 kb on - strandat 706.786 kb on - strandat 706.788 kb on + strandat 706.788 kb on + strandat 706.788 kb on + strandat 706.789 kb on - strandat 706.789 kb on - strandat 706.854 kb on + strand, within GFF635at 706.855 kb on - strand, within GFF635at 706.945 kb on + strand, within GFF635at 706.945 kb on + strand, within GFF635at 706.946 kb on - strand, within GFF635at 706.998 kb on + strand, within GFF635at 707.081 kb on + strand, within GFF635at 707.081 kb on + strand, within GFF635at 707.081 kb on + strand, within GFF635at 707.081 kb on + strand, within GFF635at 707.082 kb on - strand, within GFF635at 707.082 kb on - strand, within GFF635at 707.475 kb on + strand, within GFF636at 707.475 kb on + strand, within GFF636at 707.742 kb on + strand, within GFF636at 707.742 kb on + strand, within GFF636at 707.743 kb on - strand, within GFF636at 707.803 kb on - strand, within GFF636at 707.943 kb on + strand, within GFF636at 707.943 kb on + strand, within GFF636at 707.943 kb on + strand, within GFF636at 707.943 kb on + strand, within GFF636at 707.943 kb on + strand, within GFF636at 707.943 kb on + strand, within GFF636at 707.943 kb on + strand, within GFF636at 707.944 kb on - strand, within GFF636at 707.944 kb on - strand, within GFF636at 707.944 kb on - strand, within GFF636at 707.944 kb on - strand, within GFF636at 708.058 kb on + strandat 708.058 kb on + strandat 708.058 kb on + strandat 708.058 kb on + strandat 708.058 kb on + strandat 708.058 kb on + strandat 708.058 kb on + strandat 708.058 kb on + strandat 708.059 kb on - strandat 708.059 kb on - strandat 708.059 kb on - strandat 708.059 kb on - strandat 708.059 kb on - strandat 708.136 kb on + strand, within GFF637at 708.136 kb on + strand, within GFF637at 708.136 kb on + strand, within GFF637

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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705,794 + -0.4
705,794 + -0.7
705,794 + +0.3
705,795 - -1.2
705,795 - -0.3
705,795 - -1.3
705,851 + -1.3
705,852 - +1.4
705,982 + GFF634 0.21 -0.2
705,983 - GFF634 0.21 -0.7
706,034 - GFF634 0.26 +1.5
706,034 - GFF634 0.26 -0.5
706,091 + GFF634 0.32 -1.0
706,118 + GFF634 0.35 +0.8
706,118 + GFF634 0.35 -0.1
706,510 + GFF634 0.78 -0.9
706,510 + GFF634 0.78 +0.1
706,511 - GFF634 0.78 -2.1
706,511 - GFF634 0.78 +2.0
706,532 + GFF634 0.80 -0.2
706,532 + GFF634 0.80 +0.5
706,533 - GFF634 0.80 -0.1
706,533 - GFF634 0.80 -0.4
706,533 - GFF634 0.80 -0.7
706,747 + +0.5
706,747 + -0.1
706,747 + -0.5
706,748 - +0.4
706,748 - -0.2
706,785 + -1.2
706,785 + -0.4
706,785 + -1.7
706,785 + +0.3
706,785 + +0.3
706,785 + -0.3
706,786 - -0.0
706,786 - -1.3
706,786 - -0.4
706,788 + -1.0
706,788 + -0.0
706,788 + +0.9
706,789 - +0.2
706,789 - +0.3
706,854 + GFF635 0.15 -1.9
706,855 - GFF635 0.16 -0.7
706,945 + GFF635 0.34 +0.5
706,945 + GFF635 0.34 -2.5
706,946 - GFF635 0.34 -1.5
706,998 + GFF635 0.45 -1.0
707,081 + GFF635 0.62 +0.1
707,081 + GFF635 0.62 +0.0
707,081 + GFF635 0.62 -1.2
707,081 + GFF635 0.62 -0.7
707,082 - GFF635 0.63 +0.7
707,082 - GFF635 0.63 -1.2
707,475 + GFF636 0.27 -0.0
707,475 + GFF636 0.27 -1.4
707,742 + GFF636 0.61 -0.4
707,742 + GFF636 0.61 +1.2
707,743 - GFF636 0.61 +0.1
707,803 - GFF636 0.69 +0.2
707,943 + GFF636 0.87 -1.2
707,943 + GFF636 0.87 -0.7
707,943 + GFF636 0.87 +0.4
707,943 + GFF636 0.87 +0.5
707,943 + GFF636 0.87 +1.1
707,943 + GFF636 0.87 -0.2
707,943 + GFF636 0.87 +0.2
707,944 - GFF636 0.87 -0.6
707,944 - GFF636 0.87 +0.8
707,944 - GFF636 0.87 +1.0
707,944 - GFF636 0.87 +0.1
708,058 + -1.7
708,058 + -0.6
708,058 + +0.6
708,058 + +0.1
708,058 + +0.9
708,058 + +0.3
708,058 + -0.4
708,058 + +0.1
708,059 - -0.3
708,059 - -0.1
708,059 - -0.1
708,059 - -0.2
708,059 - +0.2
708,136 + GFF637 0.12 +0.1
708,136 + GFF637 0.12 -0.2
708,136 + GFF637 0.12 +0.2

Or see this region's nucleotide sequence