Strain Fitness in Pseudomonas sp. DMC3 around GFF4927

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4926 and GFF4927 are separated by 201 nucleotidesGFF4927 and GFF4928 are separated by 41 nucleotides GFF4926 - 3-hydroxyisobutyrate dehydrogenase, at 22,382 to 23,269 GFF4926 GFF4927 - hypothetical protein, at 23,471 to 23,821 GFF4927 GFF4928 - HTH-type transcriptional regulator CysL, at 23,863 to 24,801 GFF4928 Position (kb) 23 24Strain fitness (log2 ratio) -2 -1 0 1at 22.667 kb on - strand, within GFF4926at 23.033 kb on + strand, within GFF4926at 23.033 kb on + strand, within GFF4926at 23.033 kb on + strand, within GFF4926at 23.033 kb on + strand, within GFF4926at 23.034 kb on - strand, within GFF4926at 23.034 kb on - strand, within GFF4926at 23.082 kb on - strand, within GFF4926at 23.192 kb on + strandat 23.193 kb on - strandat 23.193 kb on - strandat 23.193 kb on - strandat 23.253 kb on - strandat 23.253 kb on - strandat 23.267 kb on + strandat 23.300 kb on + strandat 23.390 kb on + strandat 23.412 kb on + strandat 23.412 kb on + strandat 23.412 kb on + strandat 23.412 kb on + strandat 23.488 kb on - strandat 23.496 kb on - strandat 23.496 kb on - strandat 23.602 kb on - strand, within GFF4927at 23.623 kb on - strand, within GFF4927at 23.638 kb on - strand, within GFF4927at 23.638 kb on - strand, within GFF4927at 23.638 kb on - strand, within GFF4927at 23.706 kb on + strand, within GFF4927at 23.707 kb on - strand, within GFF4927at 23.864 kb on + strandat 23.864 kb on + strandat 23.864 kb on + strandat 23.865 kb on - strandat 23.865 kb on - strandat 23.865 kb on - strandat 23.865 kb on - strandat 23.867 kb on - strandat 23.941 kb on + strandat 23.941 kb on + strandat 23.942 kb on - strandat 23.942 kb on - strandat 23.942 kb on - strandat 23.958 kb on - strand, within GFF4928at 23.992 kb on + strand, within GFF4928at 23.992 kb on + strand, within GFF4928at 23.992 kb on + strand, within GFF4928at 23.992 kb on + strand, within GFF4928at 23.993 kb on - strand, within GFF4928at 23.993 kb on - strand, within GFF4928at 23.995 kb on + strand, within GFF4928at 23.995 kb on + strand, within GFF4928at 23.996 kb on - strand, within GFF4928at 24.332 kb on - strand, within GFF4928at 24.424 kb on + strand, within GFF4928at 24.424 kb on + strand, within GFF4928at 24.425 kb on - strand, within GFF4928at 24.483 kb on - strand, within GFF4928at 24.580 kb on + strand, within GFF4928at 24.580 kb on + strand, within GFF4928at 24.770 kb on + strandat 24.770 kb on + strandat 24.771 kb on - strandat 24.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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22,667 - GFF4926 0.32 -0.4
23,033 + GFF4926 0.73 +0.2
23,033 + GFF4926 0.73 +0.8
23,033 + GFF4926 0.73 -0.5
23,033 + GFF4926 0.73 +0.0
23,034 - GFF4926 0.73 -0.1
23,034 - GFF4926 0.73 -0.1
23,082 - GFF4926 0.79 +1.2
23,192 + -0.1
23,193 - -0.9
23,193 - +0.7
23,193 - -1.4
23,253 - -2.4
23,253 - -0.8
23,267 + +0.7
23,300 + -0.5
23,390 + +0.2
23,412 + -0.8
23,412 + +0.7
23,412 + +0.6
23,412 + -1.1
23,488 - -0.3
23,496 - -1.2
23,496 - -0.4
23,602 - GFF4927 0.37 +0.6
23,623 - GFF4927 0.43 +0.5
23,638 - GFF4927 0.48 +0.4
23,638 - GFF4927 0.48 +1.2
23,638 - GFF4927 0.48 +0.3
23,706 + GFF4927 0.67 -0.3
23,707 - GFF4927 0.67 +0.2
23,864 + +1.2
23,864 + +0.2
23,864 + +0.5
23,865 - -0.3
23,865 - -0.4
23,865 - +0.9
23,865 - +0.6
23,867 - +0.5
23,941 + -0.3
23,941 + +0.4
23,942 - +0.8
23,942 - +0.2
23,942 - -0.2
23,958 - GFF4928 0.10 -0.7
23,992 + GFF4928 0.14 -1.0
23,992 + GFF4928 0.14 -0.1
23,992 + GFF4928 0.14 -0.2
23,992 + GFF4928 0.14 +0.8
23,993 - GFF4928 0.14 -0.8
23,993 - GFF4928 0.14 -1.7
23,995 + GFF4928 0.14 +1.1
23,995 + GFF4928 0.14 -0.2
23,996 - GFF4928 0.14 +0.7
24,332 - GFF4928 0.50 -0.3
24,424 + GFF4928 0.60 +0.2
24,424 + GFF4928 0.60 +0.0
24,425 - GFF4928 0.60 -1.3
24,483 - GFF4928 0.66 +0.4
24,580 + GFF4928 0.76 -0.0
24,580 + GFF4928 0.76 +0.5
24,770 + -0.4
24,770 + +1.0
24,771 - -1.0
24,771 - +0.3

Or see this region's nucleotide sequence