Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4881 and GFF4882 are separated by 250 nucleotides GFF4882 and GFF4883 are separated by 27 nucleotides
GFF4881 - HTH-type transcriptional regulator CdhR, at 161,414 to 162,394
GFF4881
GFF4882 - Histidine transport ATP-binding protein HisP, at 162,645 to 163,409
GFF4882
GFF4883 - hypothetical protein, at 163,437 to 164,549
GFF4883
Position (kb) 162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 161.652 kb on + strand, within GFF4881 at 161.653 kb on - strand, within GFF4881 at 161.653 kb on - strand, within GFF4881 at 161.653 kb on - strand, within GFF4881 at 161.653 kb on - strand, within GFF4881 at 161.653 kb on - strand, within GFF4881 at 161.688 kb on - strand, within GFF4881 at 162.075 kb on + strand, within GFF4881 at 162.352 kb on + strand at 162.353 kb on - strand at 162.444 kb on + strand at 162.521 kb on - strand at 162.532 kb on + strand at 162.532 kb on + strand at 162.532 kb on + strand at 162.533 kb on - strand at 162.617 kb on + strand at 162.617 kb on + strand at 162.617 kb on + strand at 162.617 kb on + strand at 162.617 kb on + strand at 162.618 kb on - strand at 162.618 kb on - strand at 162.618 kb on - strand at 162.618 kb on - strand at 162.618 kb on - strand at 162.618 kb on - strand at 163.013 kb on - strand, within GFF4882 at 163.013 kb on - strand, within GFF4882 at 163.015 kb on + strand, within GFF4882 at 163.039 kb on + strand, within GFF4882 at 163.039 kb on + strand, within GFF4882 at 163.040 kb on - strand, within GFF4882 at 163.280 kb on + strand, within GFF4882 at 163.281 kb on - strand, within GFF4882 at 163.281 kb on - strand, within GFF4882 at 163.372 kb on + strand at 163.379 kb on + strand at 163.379 kb on + strand at 163.379 kb on + strand at 163.405 kb on + strand at 163.405 kb on + strand at 163.405 kb on + strand at 163.513 kb on + strand at 163.560 kb on + strand, within GFF4883 at 163.560 kb on + strand, within GFF4883 at 163.560 kb on + strand, within GFF4883 at 163.560 kb on + strand, within GFF4883 at 163.561 kb on - strand, within GFF4883 at 163.561 kb on - strand, within GFF4883 at 163.561 kb on - strand, within GFF4883 at 163.561 kb on - strand, within GFF4883 at 163.786 kb on + strand, within GFF4883 at 163.786 kb on + strand, within GFF4883 at 163.786 kb on + strand, within GFF4883 at 163.786 kb on + strand, within GFF4883 at 163.786 kb on + strand, within GFF4883 at 163.787 kb on - strand, within GFF4883 at 164.017 kb on + strand, within GFF4883 at 164.017 kb on + strand, within GFF4883 at 164.017 kb on + strand, within GFF4883 at 164.017 kb on + strand, within GFF4883 at 164.018 kb on - strand, within GFF4883 at 164.018 kb on - strand, within GFF4883 at 164.018 kb on - strand, within GFF4883 at 164.018 kb on - strand, within GFF4883
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 161,652 + GFF4881 0.24 +0.1 161,653 - GFF4881 0.24 +0.5 161,653 - GFF4881 0.24 +0.9 161,653 - GFF4881 0.24 -1.0 161,653 - GFF4881 0.24 +0.0 161,653 - GFF4881 0.24 -1.0 161,688 - GFF4881 0.28 +0.9 162,075 + GFF4881 0.67 +0.4 162,352 + -0.2 162,353 - -0.3 162,444 + +0.3 162,521 - -0.4 162,532 + -0.0 162,532 + -1.2 162,532 + +0.3 162,533 - -1.2 162,617 + -0.7 162,617 + -0.3 162,617 + -0.5 162,617 + -0.5 162,617 + -0.2 162,618 - +0.6 162,618 - -0.4 162,618 - -0.6 162,618 - -1.7 162,618 - +0.7 162,618 - -1.2 163,013 - GFF4882 0.48 +0.3 163,013 - GFF4882 0.48 +1.3 163,015 + GFF4882 0.48 -0.4 163,039 + GFF4882 0.52 +0.7 163,039 + GFF4882 0.52 +2.1 163,040 - GFF4882 0.52 -0.1 163,280 + GFF4882 0.83 +0.3 163,281 - GFF4882 0.83 +0.2 163,281 - GFF4882 0.83 +1.1 163,372 + -1.0 163,379 + +0.3 163,379 + +0.9 163,379 + -0.0 163,405 + +1.3 163,405 + +0.5 163,405 + -0.1 163,513 + -0.3 163,560 + GFF4883 0.11 +1.8 163,560 + GFF4883 0.11 -0.1 163,560 + GFF4883 0.11 -0.2 163,560 + GFF4883 0.11 -0.4 163,561 - GFF4883 0.11 -0.7 163,561 - GFF4883 0.11 -0.4 163,561 - GFF4883 0.11 +1.2 163,561 - GFF4883 0.11 -0.0 163,786 + GFF4883 0.31 +1.0 163,786 + GFF4883 0.31 -0.1 163,786 + GFF4883 0.31 +0.6 163,786 + GFF4883 0.31 +0.7 163,786 + GFF4883 0.31 +0.9 163,787 - GFF4883 0.31 -0.6 164,017 + GFF4883 0.52 -2.4 164,017 + GFF4883 0.52 -0.6 164,017 + GFF4883 0.52 -0.3 164,017 + GFF4883 0.52 +0.1 164,018 - GFF4883 0.52 -0.3 164,018 - GFF4883 0.52 -0.6 164,018 - GFF4883 0.52 +0.6 164,018 - GFF4883 0.52 -1.3
Or see this region's nucleotide sequence