Strain Fitness in Pseudomonas sp. DMC3 around GFF4746

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4744 and GFF4745 are separated by 101 nucleotidesGFF4745 and GFF4746 are separated by 14 nucleotidesGFF4746 and GFF4747 are separated by 127 nucleotides GFF4744 - HTH-type transcriptional regulator LutR, at 5,934 to 6,650 GFF4744 GFF4745 - hypothetical protein, at 6,752 to 7,312 GFF4745 GFF4746 - hypothetical protein, at 7,327 to 7,932 GFF4746 GFF4747 - GTP 3',8-cyclase, at 8,060 to 9,028 GFF4747 Position (kb) 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 6.652 kb on + strandat 6.652 kb on + strandat 6.652 kb on + strandat 6.652 kb on + strandat 6.652 kb on + strandat 6.652 kb on + strandat 6.652 kb on + strandat 6.652 kb on + strandat 6.652 kb on + strandat 6.652 kb on + strandat 6.652 kb on + strandat 6.653 kb on - strandat 6.653 kb on - strandat 6.653 kb on - strandat 6.653 kb on - strandat 6.653 kb on - strandat 6.852 kb on + strand, within GFF4745at 6.903 kb on + strand, within GFF4745at 6.903 kb on + strand, within GFF4745at 6.903 kb on + strand, within GFF4745at 6.903 kb on + strand, within GFF4745at 6.903 kb on + strand, within GFF4745at 6.903 kb on + strand, within GFF4745at 6.904 kb on - strand, within GFF4745at 6.904 kb on - strand, within GFF4745at 6.904 kb on - strand, within GFF4745at 6.904 kb on - strand, within GFF4745at 6.904 kb on - strand, within GFF4745at 6.991 kb on + strand, within GFF4745at 6.992 kb on - strand, within GFF4745at 7.101 kb on + strand, within GFF4745at 7.101 kb on + strand, within GFF4745at 7.101 kb on + strand, within GFF4745at 7.101 kb on + strand, within GFF4745at 7.102 kb on - strand, within GFF4745at 7.102 kb on - strand, within GFF4745at 7.102 kb on - strand, within GFF4745at 7.177 kb on - strand, within GFF4745at 7.177 kb on - strand, within GFF4745at 7.177 kb on - strand, within GFF4745at 7.177 kb on - strand, within GFF4745at 7.179 kb on + strand, within GFF4745at 7.179 kb on + strand, within GFF4745at 7.179 kb on + strand, within GFF4745at 7.179 kb on + strand, within GFF4745at 7.317 kb on + strandat 7.318 kb on - strandat 7.318 kb on - strandat 7.361 kb on + strandat 7.362 kb on - strandat 7.362 kb on - strandat 7.417 kb on + strand, within GFF4746at 7.417 kb on + strand, within GFF4746at 7.446 kb on + strand, within GFF4746at 7.447 kb on - strand, within GFF4746at 7.447 kb on - strand, within GFF4746at 7.447 kb on - strand, within GFF4746at 7.457 kb on + strand, within GFF4746at 7.457 kb on + strand, within GFF4746at 7.457 kb on + strand, within GFF4746at 7.458 kb on - strand, within GFF4746at 7.458 kb on - strand, within GFF4746at 7.586 kb on + strand, within GFF4746at 7.586 kb on + strand, within GFF4746at 7.586 kb on + strand, within GFF4746at 7.586 kb on + strand, within GFF4746at 7.587 kb on - strand, within GFF4746at 7.587 kb on - strand, within GFF4746at 7.595 kb on + strand, within GFF4746at 7.595 kb on + strand, within GFF4746at 7.596 kb on - strand, within GFF4746at 7.596 kb on - strand, within GFF4746at 7.596 kb on - strand, within GFF4746at 7.596 kb on - strand, within GFF4746at 7.596 kb on - strand, within GFF4746at 7.677 kb on - strand, within GFF4746at 7.727 kb on + strand, within GFF4746at 7.728 kb on - strand, within GFF4746at 7.795 kb on - strand, within GFF4746at 7.927 kb on - strandat 7.927 kb on - strandat 7.935 kb on + strandat 7.935 kb on + strandat 7.935 kb on + strandat 7.936 kb on - strandat 7.936 kb on - strandat 7.936 kb on - strandat 7.936 kb on - strandat 7.936 kb on - strandat 7.936 kb on - strandat 7.936 kb on - strandat 7.936 kb on - strandat 8.196 kb on + strand, within GFF4747at 8.196 kb on + strand, within GFF4747at 8.197 kb on - strand, within GFF4747at 8.197 kb on - strand, within GFF4747at 8.329 kb on - strand, within GFF4747at 8.370 kb on + strand, within GFF4747at 8.371 kb on - strand, within GFF4747at 8.371 kb on - strand, within GFF4747at 8.371 kb on - strand, within GFF4747at 8.371 kb on - strand, within GFF4747at 8.376 kb on + strand, within GFF4747at 8.508 kb on + strand, within GFF4747at 8.508 kb on + strand, within GFF4747at 8.508 kb on + strand, within GFF4747at 8.509 kb on - strand, within GFF4747at 8.509 kb on - strand, within GFF4747at 8.509 kb on - strand, within GFF4747

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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6,652 + +0.2
6,652 + +0.8
6,652 + +0.6
6,652 + +0.3
6,652 + +1.6
6,652 + -0.7
6,652 + -0.5
6,652 + -0.4
6,652 + +0.4
6,652 + -0.3
6,652 + -0.3
6,653 - -0.2
6,653 - +1.1
6,653 - -0.2
6,653 - +0.2
6,653 - -0.1
6,852 + GFF4745 0.18 +0.0
6,903 + GFF4745 0.27 +0.4
6,903 + GFF4745 0.27 -0.4
6,903 + GFF4745 0.27 +1.1
6,903 + GFF4745 0.27 -0.7
6,903 + GFF4745 0.27 -0.0
6,903 + GFF4745 0.27 +0.9
6,904 - GFF4745 0.27 +0.4
6,904 - GFF4745 0.27 -0.2
6,904 - GFF4745 0.27 +0.5
6,904 - GFF4745 0.27 +0.6
6,904 - GFF4745 0.27 -0.1
6,991 + GFF4745 0.43 +0.4
6,992 - GFF4745 0.43 +0.3
7,101 + GFF4745 0.62 -0.2
7,101 + GFF4745 0.62 -0.5
7,101 + GFF4745 0.62 +0.1
7,101 + GFF4745 0.62 +0.5
7,102 - GFF4745 0.62 +0.2
7,102 - GFF4745 0.62 +0.1
7,102 - GFF4745 0.62 -0.1
7,177 - GFF4745 0.76 -0.7
7,177 - GFF4745 0.76 -0.9
7,177 - GFF4745 0.76 -0.8
7,177 - GFF4745 0.76 +0.3
7,179 + GFF4745 0.76 +1.0
7,179 + GFF4745 0.76 +0.5
7,179 + GFF4745 0.76 -0.5
7,179 + GFF4745 0.76 +0.4
7,317 + -0.8
7,318 - -0.4
7,318 - -2.6
7,361 + -1.0
7,362 - +0.4
7,362 - +0.3
7,417 + GFF4746 0.15 +0.7
7,417 + GFF4746 0.15 +0.4
7,446 + GFF4746 0.20 +0.6
7,447 - GFF4746 0.20 +0.4
7,447 - GFF4746 0.20 -0.6
7,447 - GFF4746 0.20 +2.2
7,457 + GFF4746 0.21 -0.1
7,457 + GFF4746 0.21 +1.4
7,457 + GFF4746 0.21 +0.2
7,458 - GFF4746 0.22 +1.2
7,458 - GFF4746 0.22 +0.6
7,586 + GFF4746 0.43 +0.2
7,586 + GFF4746 0.43 -0.1
7,586 + GFF4746 0.43 +0.5
7,586 + GFF4746 0.43 +0.3
7,587 - GFF4746 0.43 -2.5
7,587 - GFF4746 0.43 -0.2
7,595 + GFF4746 0.44 +1.3
7,595 + GFF4746 0.44 +0.6
7,596 - GFF4746 0.44 +0.2
7,596 - GFF4746 0.44 +1.1
7,596 - GFF4746 0.44 +0.9
7,596 - GFF4746 0.44 -0.2
7,596 - GFF4746 0.44 -0.0
7,677 - GFF4746 0.58 +0.5
7,727 + GFF4746 0.66 +0.8
7,728 - GFF4746 0.66 +0.5
7,795 - GFF4746 0.77 +1.4
7,927 - -1.1
7,927 - -0.2
7,935 + -0.4
7,935 + +0.5
7,935 + +1.2
7,936 - -0.0
7,936 - +0.6
7,936 - +0.4
7,936 - -0.4
7,936 - -0.0
7,936 - -0.0
7,936 - +0.3
7,936 - +0.1
8,196 + GFF4747 0.14 -1.1
8,196 + GFF4747 0.14 -0.6
8,197 - GFF4747 0.14 +0.9
8,197 - GFF4747 0.14 -0.0
8,329 - GFF4747 0.28 +1.2
8,370 + GFF4747 0.32 -1.4
8,371 - GFF4747 0.32 -0.8
8,371 - GFF4747 0.32 +0.7
8,371 - GFF4747 0.32 +0.3
8,371 - GFF4747 0.32 +1.1
8,376 + GFF4747 0.33 -0.1
8,508 + GFF4747 0.46 -1.2
8,508 + GFF4747 0.46 +0.5
8,508 + GFF4747 0.46 +0.3
8,509 - GFF4747 0.46 -1.1
8,509 - GFF4747 0.46 -0.4
8,509 - GFF4747 0.46 -1.1

Or see this region's nucleotide sequence