Strain Fitness in Pseudomonas sp. DMC3 around GFF4666

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4665 and GFF4666 overlap by 4 nucleotidesGFF4666 and GFF4667 are separated by 53 nucleotidesGFF4667 and GFF4668 overlap by 4 nucleotides GFF4665 - N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase, at 156,820 to 157,773 GFF4665 GFF4666 - hypothetical protein, at 157,770 to 158,693 GFF4666 GFF4667 - Glucose-1-phosphate thymidylyltransferase 2, at 158,747 to 159,637 GFF4667 GFF4668 - dTDP-4-dehydrorhamnose reductase, at 159,634 to 160,527 GFF4668 Position (kb) 157 158 159Strain fitness (log2 ratio) -1 0 1 2 3at 156.809 kb on + strandat 156.810 kb on - strandat 156.810 kb on - strandat 156.821 kb on + strandat 156.821 kb on + strandat 156.822 kb on - strandat 156.822 kb on - strandat 156.892 kb on + strandat 156.892 kb on + strandat 156.892 kb on + strandat 156.893 kb on - strandat 156.893 kb on - strandat 156.946 kb on + strand, within GFF4665at 156.946 kb on + strand, within GFF4665at 156.947 kb on - strand, within GFF4665at 156.947 kb on - strand, within GFF4665at 156.964 kb on + strand, within GFF4665at 156.964 kb on + strand, within GFF4665at 156.964 kb on + strand, within GFF4665at 156.965 kb on - strand, within GFF4665at 157.081 kb on + strand, within GFF4665at 157.082 kb on - strand, within GFF4665at 157.146 kb on + strand, within GFF4665at 157.147 kb on - strand, within GFF4665at 157.147 kb on - strand, within GFF4665at 157.177 kb on + strand, within GFF4665at 157.178 kb on - strand, within GFF4665at 157.178 kb on - strand, within GFF4665at 157.224 kb on + strand, within GFF4665at 157.224 kb on + strand, within GFF4665at 157.224 kb on + strand, within GFF4665at 157.225 kb on - strand, within GFF4665at 157.225 kb on - strand, within GFF4665at 157.225 kb on - strand, within GFF4665at 157.225 kb on - strand, within GFF4665at 157.225 kb on - strand, within GFF4665at 157.225 kb on - strand, within GFF4665at 157.229 kb on - strand, within GFF4665at 157.229 kb on - strand, within GFF4665at 157.229 kb on - strand, within GFF4665at 157.236 kb on + strand, within GFF4665at 157.257 kb on - strand, within GFF4665at 157.275 kb on + strand, within GFF4665at 157.275 kb on + strand, within GFF4665at 157.275 kb on + strand, within GFF4665at 157.276 kb on - strand, within GFF4665at 157.279 kb on + strand, within GFF4665at 157.306 kb on + strand, within GFF4665at 157.345 kb on - strand, within GFF4665at 157.546 kb on + strand, within GFF4665at 157.546 kb on + strand, within GFF4665at 157.547 kb on - strand, within GFF4665at 157.547 kb on - strand, within GFF4665at 157.587 kb on + strand, within GFF4665at 157.588 kb on - strand, within GFF4665at 157.588 kb on - strand, within GFF4665at 157.588 kb on - strand, within GFF4665at 157.603 kb on + strand, within GFF4665at 157.665 kb on + strand, within GFF4665at 157.688 kb on + strandat 157.689 kb on - strandat 157.689 kb on - strandat 157.812 kb on - strandat 157.864 kb on - strand, within GFF4666at 157.900 kb on - strand, within GFF4666at 157.985 kb on + strand, within GFF4666at 157.991 kb on + strand, within GFF4666at 157.991 kb on + strand, within GFF4666at 157.992 kb on - strand, within GFF4666at 157.992 kb on - strand, within GFF4666at 157.992 kb on - strand, within GFF4666at 157.992 kb on - strand, within GFF4666at 157.992 kb on - strand, within GFF4666at 158.014 kb on - strand, within GFF4666at 158.039 kb on + strand, within GFF4666at 158.091 kb on + strand, within GFF4666at 158.091 kb on + strand, within GFF4666at 158.091 kb on + strand, within GFF4666at 158.116 kb on + strand, within GFF4666at 158.116 kb on + strand, within GFF4666at 158.117 kb on - strand, within GFF4666at 158.123 kb on - strand, within GFF4666at 158.123 kb on - strand, within GFF4666at 158.123 kb on - strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.212 kb on + strand, within GFF4666at 158.213 kb on - strand, within GFF4666at 158.213 kb on - strand, within GFF4666at 158.213 kb on - strand, within GFF4666at 158.213 kb on - strand, within GFF4666at 158.213 kb on - strand, within GFF4666at 158.213 kb on - strand, within GFF4666at 158.213 kb on - strand, within GFF4666at 158.216 kb on + strand, within GFF4666at 158.216 kb on + strand, within GFF4666at 158.216 kb on + strand, within GFF4666at 158.216 kb on + strand, within GFF4666at 158.216 kb on + strand, within GFF4666at 158.217 kb on - strand, within GFF4666at 158.217 kb on - strand, within GFF4666at 158.217 kb on - strand, within GFF4666at 158.217 kb on - strand, within GFF4666at 158.217 kb on - strand, within GFF4666at 158.313 kb on + strand, within GFF4666at 158.313 kb on + strand, within GFF4666at 158.313 kb on + strand, within GFF4666at 158.313 kb on + strand, within GFF4666at 158.313 kb on + strand, within GFF4666at 158.313 kb on + strand, within GFF4666at 158.314 kb on - strand, within GFF4666at 158.314 kb on - strand, within GFF4666at 158.314 kb on - strand, within GFF4666at 158.314 kb on - strand, within GFF4666at 158.314 kb on - strand, within GFF4666at 158.314 kb on - strand, within GFF4666at 158.314 kb on - strand, within GFF4666at 158.318 kb on + strand, within GFF4666at 158.319 kb on - strand, within GFF4666at 158.326 kb on + strand, within GFF4666at 158.326 kb on + strand, within GFF4666at 158.327 kb on - strand, within GFF4666at 158.327 kb on - strand, within GFF4666at 158.327 kb on - strand, within GFF4666at 158.383 kb on + strand, within GFF4666at 158.383 kb on + strand, within GFF4666at 158.384 kb on - strand, within GFF4666at 158.384 kb on - strand, within GFF4666at 158.505 kb on + strand, within GFF4666at 158.506 kb on - strand, within GFF4666at 158.527 kb on + strand, within GFF4666at 158.527 kb on + strand, within GFF4666at 158.527 kb on + strand, within GFF4666at 158.528 kb on - strand, within GFF4666at 158.528 kb on - strand, within GFF4666at 158.570 kb on + strand, within GFF4666at 158.570 kb on + strand, within GFF4666at 158.570 kb on + strand, within GFF4666at 158.570 kb on + strand, within GFF4666at 158.570 kb on + strand, within GFF4666at 158.570 kb on + strand, within GFF4666at 158.570 kb on + strand, within GFF4666at 158.570 kb on + strand, within GFF4666at 158.570 kb on + strand, within GFF4666at 158.571 kb on - strand, within GFF4666at 158.571 kb on - strand, within GFF4666at 158.571 kb on - strand, within GFF4666at 158.571 kb on - strand, within GFF4666at 158.571 kb on - strand, within GFF4666at 158.571 kb on - strand, within GFF4666at 158.571 kb on - strand, within GFF4666at 158.571 kb on - strand, within GFF4666at 158.571 kb on - strand, within GFF4666at 158.571 kb on - strand, within GFF4666at 158.574 kb on + strand, within GFF4666at 158.574 kb on + strand, within GFF4666at 158.574 kb on + strand, within GFF4666at 158.574 kb on + strand, within GFF4666at 158.574 kb on + strand, within GFF4666at 158.574 kb on + strand, within GFF4666at 158.574 kb on + strand, within GFF4666at 158.574 kb on + strand, within GFF4666at 158.575 kb on - strand, within GFF4666at 158.575 kb on - strand, within GFF4666at 158.575 kb on - strand, within GFF4666at 158.575 kb on - strand, within GFF4666at 158.575 kb on - strand, within GFF4666at 158.575 kb on - strand, within GFF4666at 158.576 kb on + strand, within GFF4666at 158.576 kb on + strand, within GFF4666at 158.576 kb on + strand, within GFF4666at 158.576 kb on + strand, within GFF4666at 158.576 kb on + strand, within GFF4666at 158.576 kb on + strand, within GFF4666at 158.577 kb on - strand, within GFF4666at 158.577 kb on - strand, within GFF4666at 158.577 kb on - strand, within GFF4666at 158.577 kb on - strand, within GFF4666at 158.577 kb on - strand, within GFF4666at 158.577 kb on - strand, within GFF4666at 158.578 kb on + strand, within GFF4666at 158.578 kb on + strand, within GFF4666at 158.578 kb on + strand, within GFF4666at 158.685 kb on + strandat 158.686 kb on - strandat 158.686 kb on - strandat 158.715 kb on - strandat 158.720 kb on + strandat 158.720 kb on + strandat 158.720 kb on + strandat 158.721 kb on - strandat 158.721 kb on - strandat 158.721 kb on - strandat 158.721 kb on - strandat 158.781 kb on + strandat 158.782 kb on - strandat 158.782 kb on - strandat 158.825 kb on - strandat 159.654 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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156,809 + -0.1
156,810 - +0.4
156,810 - +0.3
156,821 + +0.0
156,821 + +0.6
156,822 - -0.6
156,822 - +0.2
156,892 + +0.6
156,892 + +1.8
156,892 + +0.4
156,893 - -0.9
156,893 - -0.9
156,946 + GFF4665 0.13 +0.1
156,946 + GFF4665 0.13 -0.1
156,947 - GFF4665 0.13 -0.5
156,947 - GFF4665 0.13 +1.2
156,964 + GFF4665 0.15 +0.2
156,964 + GFF4665 0.15 +0.8
156,964 + GFF4665 0.15 +0.4
156,965 - GFF4665 0.15 +1.2
157,081 + GFF4665 0.27 +0.4
157,082 - GFF4665 0.27 +0.0
157,146 + GFF4665 0.34 -0.9
157,147 - GFF4665 0.34 +2.0
157,147 - GFF4665 0.34 +0.7
157,177 + GFF4665 0.37 +0.4
157,178 - GFF4665 0.38 +1.2
157,178 - GFF4665 0.38 +0.0
157,224 + GFF4665 0.42 -0.6
157,224 + GFF4665 0.42 -0.1
157,224 + GFF4665 0.42 -0.4
157,225 - GFF4665 0.42 -0.3
157,225 - GFF4665 0.42 +0.6
157,225 - GFF4665 0.42 +0.3
157,225 - GFF4665 0.42 +0.6
157,225 - GFF4665 0.42 +0.7
157,225 - GFF4665 0.42 +0.9
157,229 - GFF4665 0.43 +1.4
157,229 - GFF4665 0.43 -0.6
157,229 - GFF4665 0.43 +0.6
157,236 + GFF4665 0.44 +0.5
157,257 - GFF4665 0.46 +1.5
157,275 + GFF4665 0.48 -0.1
157,275 + GFF4665 0.48 -0.6
157,275 + GFF4665 0.48 +1.8
157,276 - GFF4665 0.48 +0.1
157,279 + GFF4665 0.48 -0.7
157,306 + GFF4665 0.51 +0.7
157,345 - GFF4665 0.55 -0.1
157,546 + GFF4665 0.76 +0.5
157,546 + GFF4665 0.76 +1.1
157,547 - GFF4665 0.76 +0.9
157,547 - GFF4665 0.76 +0.6
157,587 + GFF4665 0.80 +0.6
157,588 - GFF4665 0.81 +0.7
157,588 - GFF4665 0.81 +0.5
157,588 - GFF4665 0.81 +0.1
157,603 + GFF4665 0.82 +1.3
157,665 + GFF4665 0.89 +0.2
157,688 + -0.1
157,689 - +0.7
157,689 - +0.5
157,812 - +0.2
157,864 - GFF4666 0.10 +0.9
157,900 - GFF4666 0.14 -0.1
157,985 + GFF4666 0.23 +0.1
157,991 + GFF4666 0.24 +0.1
157,991 + GFF4666 0.24 +2.6
157,992 - GFF4666 0.24 +0.8
157,992 - GFF4666 0.24 +1.1
157,992 - GFF4666 0.24 +0.0
157,992 - GFF4666 0.24 +1.7
157,992 - GFF4666 0.24 -0.5
158,014 - GFF4666 0.26 +1.0
158,039 + GFF4666 0.29 +0.9
158,091 + GFF4666 0.35 -1.0
158,091 + GFF4666 0.35 +1.0
158,091 + GFF4666 0.35 -0.6
158,116 + GFF4666 0.37 +2.9
158,116 + GFF4666 0.37 -0.0
158,117 - GFF4666 0.38 +1.9
158,123 - GFF4666 0.38 +0.8
158,123 - GFF4666 0.38 +0.3
158,123 - GFF4666 0.38 +0.4
158,212 + GFF4666 0.48 +0.3
158,212 + GFF4666 0.48 +1.1
158,212 + GFF4666 0.48 -0.2
158,212 + GFF4666 0.48 +0.0
158,212 + GFF4666 0.48 +0.5
158,212 + GFF4666 0.48 +1.0
158,212 + GFF4666 0.48 -0.7
158,212 + GFF4666 0.48 +1.1
158,212 + GFF4666 0.48 -0.5
158,212 + GFF4666 0.48 +0.1
158,212 + GFF4666 0.48 +1.6
158,212 + GFF4666 0.48 +0.6
158,213 - GFF4666 0.48 +0.6
158,213 - GFF4666 0.48 +1.2
158,213 - GFF4666 0.48 -0.4
158,213 - GFF4666 0.48 +0.3
158,213 - GFF4666 0.48 -0.2
158,213 - GFF4666 0.48 -0.5
158,213 - GFF4666 0.48 +0.6
158,216 + GFF4666 0.48 +0.2
158,216 + GFF4666 0.48 -0.5
158,216 + GFF4666 0.48 +0.6
158,216 + GFF4666 0.48 +0.5
158,216 + GFF4666 0.48 +0.2
158,217 - GFF4666 0.48 +0.2
158,217 - GFF4666 0.48 -0.7
158,217 - GFF4666 0.48 +1.7
158,217 - GFF4666 0.48 +0.6
158,217 - GFF4666 0.48 -0.7
158,313 + GFF4666 0.59 +0.3
158,313 + GFF4666 0.59 +1.1
158,313 + GFF4666 0.59 +0.2
158,313 + GFF4666 0.59 +1.8
158,313 + GFF4666 0.59 +1.8
158,313 + GFF4666 0.59 +0.5
158,314 - GFF4666 0.59 -0.4
158,314 - GFF4666 0.59 +0.4
158,314 - GFF4666 0.59 -0.7
158,314 - GFF4666 0.59 +0.7
158,314 - GFF4666 0.59 +0.3
158,314 - GFF4666 0.59 -0.1
158,314 - GFF4666 0.59 +1.0
158,318 + GFF4666 0.59 -0.2
158,319 - GFF4666 0.59 -0.4
158,326 + GFF4666 0.60 -0.2
158,326 + GFF4666 0.60 +0.7
158,327 - GFF4666 0.60 -0.5
158,327 - GFF4666 0.60 -1.2
158,327 - GFF4666 0.60 +0.1
158,383 + GFF4666 0.66 -0.1
158,383 + GFF4666 0.66 +1.7
158,384 - GFF4666 0.66 +0.5
158,384 - GFF4666 0.66 +0.1
158,505 + GFF4666 0.80 -0.2
158,506 - GFF4666 0.80 +1.2
158,527 + GFF4666 0.82 +0.0
158,527 + GFF4666 0.82 -0.8
158,527 + GFF4666 0.82 -0.1
158,528 - GFF4666 0.82 -0.1
158,528 - GFF4666 0.82 +0.8
158,570 + GFF4666 0.87 +1.5
158,570 + GFF4666 0.87 -1.4
158,570 + GFF4666 0.87 +0.6
158,570 + GFF4666 0.87 -0.2
158,570 + GFF4666 0.87 +0.2
158,570 + GFF4666 0.87 +0.0
158,570 + GFF4666 0.87 +2.1
158,570 + GFF4666 0.87 +0.0
158,570 + GFF4666 0.87 -0.0
158,571 - GFF4666 0.87 -0.0
158,571 - GFF4666 0.87 +0.9
158,571 - GFF4666 0.87 +1.4
158,571 - GFF4666 0.87 -0.5
158,571 - GFF4666 0.87 +0.5
158,571 - GFF4666 0.87 +1.3
158,571 - GFF4666 0.87 -0.7
158,571 - GFF4666 0.87 +0.6
158,571 - GFF4666 0.87 +1.4
158,571 - GFF4666 0.87 +0.6
158,574 + GFF4666 0.87 +0.5
158,574 + GFF4666 0.87 +0.7
158,574 + GFF4666 0.87 +0.8
158,574 + GFF4666 0.87 -0.2
158,574 + GFF4666 0.87 -0.5
158,574 + GFF4666 0.87 -0.6
158,574 + GFF4666 0.87 +2.1
158,574 + GFF4666 0.87 +1.4
158,575 - GFF4666 0.87 +0.3
158,575 - GFF4666 0.87 +0.9
158,575 - GFF4666 0.87 +0.6
158,575 - GFF4666 0.87 +1.0
158,575 - GFF4666 0.87 -0.4
158,575 - GFF4666 0.87 -1.0
158,576 + GFF4666 0.87 -1.3
158,576 + GFF4666 0.87 +0.8
158,576 + GFF4666 0.87 +0.1
158,576 + GFF4666 0.87 -0.3
158,576 + GFF4666 0.87 +0.1
158,576 + GFF4666 0.87 -0.1
158,577 - GFF4666 0.87 -0.0
158,577 - GFF4666 0.87 +0.5
158,577 - GFF4666 0.87 +0.4
158,577 - GFF4666 0.87 -1.2
158,577 - GFF4666 0.87 +1.9
158,577 - GFF4666 0.87 +1.7
158,578 + GFF4666 0.87 +0.4
158,578 + GFF4666 0.87 -0.3
158,578 + GFF4666 0.87 -0.3
158,685 + +0.3
158,686 - +0.2
158,686 - +0.6
158,715 - -0.1
158,720 + +2.2
158,720 + -0.5
158,720 + +0.1
158,721 - -0.8
158,721 - -0.7
158,721 - +0.0
158,721 - +1.3
158,781 + -0.7
158,782 - +1.6
158,782 - -0.6
158,825 - +1.0
159,654 + -0.5

Or see this region's nucleotide sequence