Strain Fitness in Pseudomonas sp. DMC3 around GFF4659

Experiment: D-Glucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C)
146,429	-				-0.5
146,429	-				+0.6
146,505	+				+0.6
146,506	-				-0.0
146,506	-				+2.5
146,525	+				-0.1
146,526	-		GFF4658	0.10	-0.6
146,526	-		GFF4658	0.10	-0.2
146,526	-		GFF4658	0.10	+1.3
146,526	-		GFF4658	0.10	+0.7
146,610	-		GFF4658	0.19	+0.6
146,652	-		GFF4658	0.23	-0.2
146,652	-		GFF4658	0.23	-0.7
146,796	+		GFF4658	0.39	+0.3
146,796	+		GFF4658	0.39	-0.2
146,796	+		GFF4658	0.39	-0.3
146,862	+		GFF4658	0.45	+0.0
146,897	-		GFF4658	0.49	+0.6
146,913	+		GFF4658	0.51	-0.7
146,942	+		GFF4658	0.54	-0.1
146,979	+		GFF4658	0.58	-0.4
146,980	-		GFF4658	0.58	-2.2
147,070	+		GFF4658	0.67	-0.3
147,071	-		GFF4658	0.68	-0.6
147,071	-		GFF4658	0.68	+0.0
147,170	+		GFF4658	0.78	-0.2
147,170	+		GFF4658	0.78	+0.3
147,171	-		GFF4658	0.78	-0.7
147,171	-		GFF4658	0.78	+1.7
147,171	-		GFF4658	0.78	+0.5
147,232	+		GFF4658	0.84	-0.2
147,233	-		GFF4658	0.85	+1.6
147,233	-		GFF4658	0.85	+0.2
147,233	-		GFF4658	0.85	+0.2
147,262	+		GFF4658	0.88	+0.0
147,262	+		GFF4658	0.88	-0.3
147,262	+		GFF4658	0.88	-0.6
147,262	+		GFF4658	0.88	+0.5
147,262	+		GFF4658	0.88	+0.4
147,263	-		GFF4658	0.88	+0.7
147,263	-		GFF4658	0.88	+0.6
147,263	-		GFF4658	0.88	+0.1
147,263	-		GFF4658	0.88	+0.2
147,263	-		GFF4658	0.88	-0.0
147,263	-		GFF4658	0.88	-0.5
147,263	-		GFF4658	0.88	+1.0
147,263	-		GFF4658	0.88	+0.3
147,268	+		GFF4658	0.88	-1.0
147,268	+		GFF4658	0.88	-1.3
147,310	+				-1.2
147,311	-				-0.1
147,325	+				-1.5
147,325	+				-0.3
147,325	+				+1.2
147,325	+				-0.4
147,325	+				+0.2
147,326	-				-2.4
147,326	-				+0.0
147,326	-				+0.5
147,326	-				-0.3
147,326	-				+1.5
147,338	-				-0.3
147,377	-				-1.1
147,455	+		GFF4659	0.14	-0.3
147,459	+		GFF4659	0.15	+0.7
147,459	+		GFF4659	0.15	+0.8
147,460	-		GFF4659	0.15	+1.6
147,460	-		GFF4659	0.15	+0.2
147,460	-		GFF4659	0.15	+1.1
147,460	-		GFF4659	0.15	+0.0
147,468	+		GFF4659	0.17	+0.6
147,468	+		GFF4659	0.17	-0.7
147,469	-		GFF4659	0.18	+0.0
147,473	+		GFF4659	0.19	+0.5
147,473	+		GFF4659	0.19	-0.7
147,473	+		GFF4659	0.19	-1.0
147,473	+		GFF4659	0.19	+0.7
147,473	+		GFF4659	0.19	+0.6
147,473	+		GFF4659	0.19	+0.0
147,473	+		GFF4659	0.19	+2.0
147,474	-		GFF4659	0.19	+0.1
147,474	-		GFF4659	0.19	+0.4
147,474	-		GFF4659	0.19	-0.7
147,474	-		GFF4659	0.19	-0.4
147,474	-		GFF4659	0.19	-0.4
147,475	+		GFF4659	0.19	+2.3
147,475	+		GFF4659	0.19	+0.3
147,476	-		GFF4659	0.20	-0.4
147,487	+		GFF4659	0.22	+1.3
147,488	-		GFF4659	0.23	+1.7
147,488	-		GFF4659	0.23	-2.3
147,488	-		GFF4659	0.23	+1.0
147,495	+		GFF4659	0.25	+0.0
147,495	+		GFF4659	0.25	+0.7
147,519	+		GFF4659	0.31	+0.0
147,519	+		GFF4659	0.31	-0.3
147,519	+		GFF4659	0.31	+0.0
147,519	+		GFF4659	0.31	+1.2
147,519	+		GFF4659	0.31	+0.8
147,519	+		GFF4659	0.31	+0.5
147,520	-		GFF4659	0.31	+1.2
147,616	-		GFF4659	0.57	+0.3
147,616	-		GFF4659	0.57	+2.3
147,627	+		GFF4659	0.60	-0.2
147,627	+		GFF4659	0.60	+0.9
147,628	-		GFF4659	0.60	+0.6
147,628	-		GFF4659	0.60	-0.1
147,628	-		GFF4659	0.60	-0.7
147,631	+		GFF4659	0.61	+0.9
147,631	+		GFF4659	0.61	+0.7
147,631	+		GFF4659	0.61	+1.1
147,632	-		GFF4659	0.61	-0.3
147,632	-		GFF4659	0.61	+0.2
147,632	-		GFF4659	0.61	+1.0
147,684	+		GFF4659	0.75	-0.4
147,684	+		GFF4659	0.75	+0.2
147,684	+		GFF4659	0.75	+1.6
147,684	+		GFF4659	0.75	+0.7
147,725	+		GFF4659	0.85	-0.2
147,725	+		GFF4659	0.85	-1.5
147,725	+		GFF4659	0.85	+0.5
147,725	+		GFF4659	0.85	-0.7
147,725	+		GFF4659	0.85	-0.1
147,725	+		GFF4659	0.85	-0.1
147,726	-		GFF4659	0.86	+1.1
147,726	-		GFF4659	0.86	-0.1
147,726	-		GFF4659	0.86	+0.1
147,726	-		GFF4659	0.86	-0.0
147,726	-		GFF4659	0.86	-0.1
147,726	-		GFF4659	0.86	+0.5
147,729	+		GFF4659	0.87	+2.2
147,729	+		GFF4659	0.87	+1.0
147,729	+		GFF4659	0.87	+0.4
147,729	+		GFF4659	0.87	+1.5
147,729	+		GFF4659	0.87	+2.0
147,729	+		GFF4659	0.87	+0.8
147,729	+		GFF4659	0.87	+0.9
147,729	+		GFF4659	0.87	-0.2
147,729	+		GFF4659	0.87	+0.0
147,729	+		GFF4659	0.87	+0.0
147,729	+		GFF4659	0.87	+0.9
147,729	+		GFF4659	0.87	+1.4
147,729	+		GFF4659	0.87	+0.9
147,729	+		GFF4659	0.87	+1.1
147,729	+		GFF4659	0.87	+0.2
147,729	+		GFF4659	0.87	+0.8
147,730	-		GFF4659	0.87	+1.4
147,730	-		GFF4659	0.87	+1.2
147,730	-		GFF4659	0.87	+0.9
147,730	-		GFF4659	0.87	+0.9
147,730	-		GFF4659	0.87	-0.7
147,730	-		GFF4659	0.87	+0.9
147,730	-		GFF4659	0.87	-0.2
147,730	-		GFF4659	0.87	+0.8
147,730	-		GFF4659	0.87	-0.0
147,730	-		GFF4659	0.87	+0.9
147,733	+		GFF4659	0.88	-1.2
147,733	+		GFF4659	0.88	+0.8
147,733	+		GFF4659	0.88	-1.2
147,734	-		GFF4659	0.88	+0.4
147,734	-		GFF4659	0.88	+0.8
147,734	-		GFF4659	0.88	+0.7
147,734	-		GFF4659	0.88	+0.5
147,749	-				+1.2
147,796	+				+0.5
147,814	+				+0.0
147,930	-				-1.6
147,930	-				+0.1
147,930	-				+1.3
148,012	+		GFF4660	0.15	+2.0
148,012	+		GFF4660	0.15	+0.3
148,012	+		GFF4660	0.15	-0.7
148,012	+		GFF4660	0.15	+0.6
148,012	+		GFF4660	0.15	-1.4
148,012	+		GFF4660	0.15	-0.9
148,013	-		GFF4660	0.15	-1.4
148,070	+		GFF4660	0.20	+0.6
148,094	+		GFF4660	0.23	-0.7
148,095	-		GFF4660	0.23	-1.0
148,095	-		GFF4660	0.23	+1.1
148,184	+		GFF4660	0.31	+0.0
148,211	-		GFF4660	0.34	-1.4
148,393	+		GFF4660	0.52	-0.2
148,394	-		GFF4660	0.52	-2.4
148,463	+		GFF4660	0.59	-1.2
148,477	+		GFF4660	0.60	-0.4
148,477	+		GFF4660	0.60	-1.7
148,478	-		GFF4660	0.60	-1.0
148,582	+		GFF4660	0.70	-0.3
148,602	+		GFF4660	0.72	-1.8
148,602	+		GFF4660	0.72	+0.9
148,603	-		GFF4660	0.72	-0.8
148,697	+		GFF4660	0.81	-1.6
148,698	-		GFF4660	0.81	-1.6
148,698	-		GFF4660	0.81	-0.6
148,698	-		GFF4660	0.81	-0.9
148,767	+		GFF4660	0.88	-0.6
148,768	-		GFF4660	0.88	-1.0
148,777	-		GFF4660	0.89	+0.3