Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4617 and GFF4618 are separated by 113 nucleotides GFF4618 and GFF4619 are separated by 97 nucleotides GFF4619 and GFF4620 are separated by 22 nucleotides GFF4620 and GFF4621 overlap by 4 nucleotides
GFF4617 - HTH-type transcriptional regulator CysB, at 102,611 to 103,585
GFF4617
GFF4618 - hypothetical protein, at 103,699 to 104,202
GFF4618
GFF4619 - hypothetical protein, at 104,300 to 105,205
GFF4619
GFF4620 - hypothetical protein, at 105,228 to 106,184
GFF4620
GFF4621 - hypothetical protein, at 106,181 to 106,516
GFF4621
Position (kb) 104
105
106 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 103.483 kb on + strand, within GFF4617 at 103.484 kb on - strand, within GFF4617 at 103.484 kb on - strand, within GFF4617 at 103.484 kb on - strand, within GFF4617 at 103.484 kb on - strand, within GFF4617 at 103.506 kb on + strand at 103.506 kb on + strand at 103.506 kb on + strand at 103.506 kb on + strand at 103.506 kb on + strand at 103.506 kb on + strand at 103.507 kb on - strand at 103.563 kb on + strand at 103.563 kb on + strand at 103.563 kb on + strand at 103.585 kb on + strand at 103.585 kb on + strand at 103.585 kb on + strand at 103.586 kb on - strand at 103.586 kb on - strand at 103.586 kb on - strand at 103.586 kb on - strand at 103.605 kb on + strand at 103.605 kb on + strand at 103.631 kb on - strand at 103.632 kb on + strand at 103.634 kb on + strand at 103.634 kb on + strand at 103.634 kb on + strand at 103.635 kb on - strand at 103.635 kb on - strand at 103.635 kb on - strand at 103.640 kb on + strand at 103.689 kb on + strand at 103.690 kb on - strand at 103.742 kb on + strand at 103.743 kb on - strand at 103.984 kb on - strand, within GFF4618 at 104.045 kb on + strand, within GFF4618 at 104.046 kb on - strand, within GFF4618 at 104.046 kb on - strand, within GFF4618 at 104.046 kb on - strand, within GFF4618 at 104.095 kb on + strand, within GFF4618 at 104.095 kb on + strand, within GFF4618 at 104.096 kb on - strand, within GFF4618 at 104.096 kb on - strand, within GFF4618 at 104.096 kb on - strand, within GFF4618 at 104.096 kb on - strand, within GFF4618 at 104.098 kb on + strand, within GFF4618 at 104.098 kb on + strand, within GFF4618 at 104.098 kb on + strand, within GFF4618 at 104.098 kb on + strand, within GFF4618 at 104.098 kb on + strand, within GFF4618 at 104.098 kb on + strand, within GFF4618 at 104.098 kb on + strand, within GFF4618 at 104.099 kb on - strand, within GFF4618 at 104.099 kb on - strand, within GFF4618 at 104.099 kb on - strand, within GFF4618 at 104.099 kb on - strand, within GFF4618 at 104.099 kb on - strand, within GFF4618 at 104.099 kb on - strand, within GFF4618 at 104.099 kb on - strand, within GFF4618 at 104.099 kb on - strand, within GFF4618 at 104.099 kb on - strand, within GFF4618 at 104.102 kb on + strand, within GFF4618 at 104.102 kb on + strand, within GFF4618 at 104.102 kb on + strand, within GFF4618 at 104.102 kb on + strand, within GFF4618 at 104.102 kb on + strand, within GFF4618 at 104.102 kb on + strand, within GFF4618 at 104.102 kb on + strand, within GFF4618 at 104.103 kb on - strand, within GFF4618 at 104.103 kb on - strand, within GFF4618 at 104.103 kb on - strand, within GFF4618 at 104.103 kb on - strand, within GFF4618 at 104.162 kb on + strand at 104.162 kb on + strand at 104.162 kb on + strand at 104.183 kb on + strand at 104.183 kb on + strand at 104.183 kb on + strand at 104.183 kb on + strand at 104.184 kb on - strand at 104.184 kb on - strand at 104.184 kb on - strand at 104.246 kb on + strand at 104.246 kb on + strand at 104.246 kb on + strand at 104.247 kb on - strand at 104.247 kb on - strand at 104.247 kb on - strand at 104.265 kb on - strand at 104.302 kb on - strand at 104.302 kb on - strand at 104.470 kb on + strand, within GFF4619 at 104.471 kb on - strand, within GFF4619 at 104.471 kb on - strand, within GFF4619 at 104.682 kb on + strand, within GFF4619 at 104.683 kb on - strand, within GFF4619 at 104.683 kb on - strand, within GFF4619 at 104.683 kb on - strand, within GFF4619 at 104.868 kb on + strand, within GFF4619 at 104.869 kb on - strand, within GFF4619 at 104.923 kb on - strand, within GFF4619 at 104.923 kb on - strand, within GFF4619 at 105.123 kb on + strand at 105.124 kb on - strand at 105.124 kb on - strand at 105.196 kb on + strand at 105.197 kb on - strand at 105.233 kb on + strand at 105.233 kb on + strand at 105.234 kb on - strand at 105.248 kb on + strand at 105.248 kb on + strand at 105.266 kb on - strand at 105.266 kb on - strand at 105.328 kb on + strand, within GFF4620 at 105.329 kb on - strand, within GFF4620 at 105.373 kb on + strand, within GFF4620 at 105.373 kb on + strand, within GFF4620 at 105.373 kb on + strand, within GFF4620 at 105.373 kb on + strand, within GFF4620 at 105.373 kb on + strand, within GFF4620 at 105.374 kb on - strand, within GFF4620 at 105.374 kb on - strand, within GFF4620 at 105.374 kb on - strand, within GFF4620 at 105.374 kb on - strand, within GFF4620 at 105.374 kb on - strand, within GFF4620 at 105.374 kb on - strand, within GFF4620 at 105.421 kb on + strand, within GFF4620 at 105.421 kb on + strand, within GFF4620 at 105.422 kb on - strand, within GFF4620 at 105.422 kb on - strand, within GFF4620 at 105.472 kb on - strand, within GFF4620 at 105.472 kb on - strand, within GFF4620 at 105.553 kb on - strand, within GFF4620 at 105.567 kb on - strand, within GFF4620 at 105.568 kb on + strand, within GFF4620 at 105.568 kb on + strand, within GFF4620 at 105.569 kb on - strand, within GFF4620 at 105.569 kb on - strand, within GFF4620 at 105.716 kb on - strand, within GFF4620 at 105.750 kb on - strand, within GFF4620 at 105.899 kb on + strand, within GFF4620 at 105.985 kb on + strand, within GFF4620 at 105.985 kb on + strand, within GFF4620 at 105.985 kb on + strand, within GFF4620 at 105.986 kb on - strand, within GFF4620 at 106.121 kb on - strand at 106.148 kb on + strand at 106.149 kb on - strand at 106.155 kb on + strand at 106.155 kb on + strand at 106.155 kb on + strand at 106.155 kb on + strand at 106.155 kb on + strand at 106.155 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 103,483 + GFF4617 0.89 -0.1 103,484 - GFF4617 0.90 -0.3 103,484 - GFF4617 0.90 -1.6 103,484 - GFF4617 0.90 -1.0 103,484 - GFF4617 0.90 -3.7 103,506 + -1.1 103,506 + +0.6 103,506 + -1.0 103,506 + -2.5 103,506 + -3.2 103,506 + -2.7 103,507 - +0.6 103,563 + -3.3 103,563 + -1.7 103,563 + -1.5 103,585 + -2.5 103,585 + -1.6 103,585 + -0.4 103,586 - -0.8 103,586 - -1.9 103,586 - -0.9 103,586 - +0.0 103,605 + +0.7 103,605 + +1.3 103,631 - +0.0 103,632 + -0.5 103,634 + +0.3 103,634 + +0.9 103,634 + +1.4 103,635 - -0.3 103,635 - +0.4 103,635 - +0.4 103,640 + -1.0 103,689 + +0.0 103,690 - -0.9 103,742 + +1.3 103,743 - -1.7 103,984 - GFF4618 0.57 -0.3 104,045 + GFF4618 0.69 -0.1 104,046 - GFF4618 0.69 +0.2 104,046 - GFF4618 0.69 -0.1 104,046 - GFF4618 0.69 +0.8 104,095 + GFF4618 0.79 -0.7 104,095 + GFF4618 0.79 +0.1 104,096 - GFF4618 0.79 +0.0 104,096 - GFF4618 0.79 -1.0 104,096 - GFF4618 0.79 -0.2 104,096 - GFF4618 0.79 -1.9 104,098 + GFF4618 0.79 -0.6 104,098 + GFF4618 0.79 +1.2 104,098 + GFF4618 0.79 +0.3 104,098 + GFF4618 0.79 -0.5 104,098 + GFF4618 0.79 +0.1 104,098 + GFF4618 0.79 +0.2 104,098 + GFF4618 0.79 +0.4 104,099 - GFF4618 0.79 +0.1 104,099 - GFF4618 0.79 -0.6 104,099 - GFF4618 0.79 -1.4 104,099 - GFF4618 0.79 -0.3 104,099 - GFF4618 0.79 -1.1 104,099 - GFF4618 0.79 +0.5 104,099 - GFF4618 0.79 +0.4 104,099 - GFF4618 0.79 +0.9 104,099 - GFF4618 0.79 -1.1 104,102 + GFF4618 0.80 -0.2 104,102 + GFF4618 0.80 +0.3 104,102 + GFF4618 0.80 +0.2 104,102 + GFF4618 0.80 -0.2 104,102 + GFF4618 0.80 -1.0 104,102 + GFF4618 0.80 -0.3 104,102 + GFF4618 0.80 -0.7 104,103 - GFF4618 0.80 +1.1 104,103 - GFF4618 0.80 +0.5 104,103 - GFF4618 0.80 -0.9 104,103 - GFF4618 0.80 -0.5 104,162 + +1.3 104,162 + +0.8 104,162 + -0.0 104,183 + -1.2 104,183 + -0.6 104,183 + +0.6 104,183 + +0.2 104,184 - -1.0 104,184 - -1.0 104,184 - -1.6 104,246 + -0.4 104,246 + -0.6 104,246 + +1.2 104,247 - -0.3 104,247 - -0.9 104,247 - -0.1 104,265 - +0.5 104,302 - -1.2 104,302 - -1.0 104,470 + GFF4619 0.19 +1.1 104,471 - GFF4619 0.19 +0.2 104,471 - GFF4619 0.19 +1.6 104,682 + GFF4619 0.42 +1.4 104,683 - GFF4619 0.42 -0.3 104,683 - GFF4619 0.42 -0.7 104,683 - GFF4619 0.42 +1.8 104,868 + GFF4619 0.63 -0.5 104,869 - GFF4619 0.63 +1.2 104,923 - GFF4619 0.69 +0.2 104,923 - GFF4619 0.69 +0.6 105,123 + +0.3 105,124 - -0.7 105,124 - +0.1 105,196 + -2.0 105,197 - -0.2 105,233 + +0.6 105,233 + -0.5 105,234 - -0.4 105,248 + +1.9 105,248 + +1.0 105,266 - -1.3 105,266 - -0.0 105,328 + GFF4620 0.10 +0.3 105,329 - GFF4620 0.11 -0.7 105,373 + GFF4620 0.15 +0.1 105,373 + GFF4620 0.15 +0.5 105,373 + GFF4620 0.15 +0.6 105,373 + GFF4620 0.15 -1.1 105,373 + GFF4620 0.15 -0.3 105,374 - GFF4620 0.15 -0.7 105,374 - GFF4620 0.15 -0.8 105,374 - GFF4620 0.15 -0.5 105,374 - GFF4620 0.15 -1.6 105,374 - GFF4620 0.15 +0.4 105,374 - GFF4620 0.15 +0.5 105,421 + GFF4620 0.20 -1.6 105,421 + GFF4620 0.20 -0.4 105,422 - GFF4620 0.20 -0.1 105,422 - GFF4620 0.20 +0.3 105,472 - GFF4620 0.25 -0.2 105,472 - GFF4620 0.25 +0.6 105,553 - GFF4620 0.34 +1.2 105,567 - GFF4620 0.35 +0.2 105,568 + GFF4620 0.36 -0.6 105,568 + GFF4620 0.36 -2.2 105,569 - GFF4620 0.36 +0.2 105,569 - GFF4620 0.36 -0.1 105,716 - GFF4620 0.51 +0.3 105,750 - GFF4620 0.55 +0.2 105,899 + GFF4620 0.70 +1.3 105,985 + GFF4620 0.79 +0.4 105,985 + GFF4620 0.79 -0.6 105,985 + GFF4620 0.79 -0.2 105,986 - GFF4620 0.79 +0.3 106,121 - +0.9 106,148 + +0.5 106,149 - -2.2 106,155 + +0.7 106,155 + -1.2 106,155 + -0.7 106,155 + +0.8 106,155 + +0.2 106,155 + -0.1
Or see this region's nucleotide sequence