Strain Fitness in Pseudomonas sp. DMC3 around GFF4285

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4284 and GFF4285 are separated by 149 nucleotidesGFF4285 and GFF4286 are separated by 220 nucleotides GFF4284 - hypothetical protein, at 265,507 to 282,045 GFF4284 GFF4285 - hypothetical protein, at 282,195 to 282,533 GFF4285 GFF4286 - hypothetical protein, at 282,754 to 284,706 GFF4286 Position (kb) 282 283Strain fitness (log2 ratio) -1 0 1 2at 281.257 kb on + strandat 281.258 kb on - strandat 281.493 kb on + strandat 281.494 kb on - strandat 281.506 kb on + strandat 281.506 kb on + strandat 281.506 kb on + strandat 281.506 kb on + strandat 281.506 kb on + strandat 281.506 kb on + strandat 281.506 kb on + strandat 281.507 kb on - strandat 281.507 kb on - strandat 282.132 kb on + strandat 282.201 kb on + strandat 282.201 kb on + strandat 282.202 kb on - strandat 282.202 kb on - strandat 282.252 kb on + strand, within GFF4285at 282.253 kb on - strand, within GFF4285at 282.306 kb on + strand, within GFF4285at 282.307 kb on - strand, within GFF4285at 282.307 kb on - strand, within GFF4285at 282.685 kb on + strandat 282.806 kb on + strandat 282.806 kb on + strandat 282.806 kb on + strandat 282.806 kb on + strandat 282.806 kb on + strandat 282.807 kb on - strandat 282.807 kb on - strandat 282.950 kb on + strand, within GFF4286at 282.950 kb on + strand, within GFF4286at 282.950 kb on + strand, within GFF4286at 282.951 kb on - strand, within GFF4286at 282.971 kb on + strand, within GFF4286at 282.972 kb on - strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.373 kb on + strand, within GFF4286at 283.374 kb on - strand, within GFF4286at 283.374 kb on - strand, within GFF4286at 283.421 kb on + strand, within GFF4286at 283.422 kb on - strand, within GFF4286at 283.422 kb on - strand, within GFF4286at 283.422 kb on - strand, within GFF4286

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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281,257 + +0.5
281,258 - +0.5
281,493 + -0.4
281,494 - +1.7
281,506 + -0.5
281,506 + +0.4
281,506 + +0.3
281,506 + -0.0
281,506 + -0.6
281,506 + +0.4
281,506 + +0.4
281,507 - +0.3
281,507 - -0.1
282,132 + +0.2
282,201 + -0.8
282,201 + -1.4
282,202 - -1.1
282,202 - -0.1
282,252 + GFF4285 0.17 +0.5
282,253 - GFF4285 0.17 +0.5
282,306 + GFF4285 0.33 +0.0
282,307 - GFF4285 0.33 +1.0
282,307 - GFF4285 0.33 +0.4
282,685 + +0.7
282,806 + -1.2
282,806 + -0.3
282,806 + -0.0
282,806 + +0.5
282,806 + +0.1
282,807 - +1.0
282,807 - -0.7
282,950 + GFF4286 0.10 +0.4
282,950 + GFF4286 0.10 +1.9
282,950 + GFF4286 0.10 +0.7
282,951 - GFF4286 0.10 -0.9
282,971 + GFF4286 0.11 +0.1
282,972 - GFF4286 0.11 +0.5
283,373 + GFF4286 0.32 +0.5
283,373 + GFF4286 0.32 -0.4
283,373 + GFF4286 0.32 +0.2
283,373 + GFF4286 0.32 -1.3
283,373 + GFF4286 0.32 +0.0
283,373 + GFF4286 0.32 +0.4
283,374 - GFF4286 0.32 -0.3
283,374 - GFF4286 0.32 +1.1
283,421 + GFF4286 0.34 +0.9
283,422 - GFF4286 0.34 -0.3
283,422 - GFF4286 0.34 -0.4
283,422 - GFF4286 0.34 +0.5

Or see this region's nucleotide sequence