Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4223 and GFF4224 are separated by 1 nucleotides GFF4224 and GFF4225 are separated by 45 nucleotides GFF4225 and GFF4226 are separated by 273 nucleotides
GFF4223 - Biopolymer transport protein ExbD, at 194,830 to 195,231
GFF4223
GFF4224 - Tol-Pal system protein TolQ, at 195,233 to 195,958
GFF4224
GFF4225 - hypothetical protein, at 196,004 to 196,813
GFF4225
GFF4226 - hypothetical protein, at 197,087 to 198,430
GFF4226
Position (kb) 196
197 Strain fitness (log2 ratio) -2
-1
0
1 at 195.015 kb on + strand, within GFF4223 at 195.138 kb on + strand, within GFF4223 at 195.333 kb on + strand, within GFF4224 at 195.333 kb on + strand, within GFF4224 at 195.334 kb on - strand, within GFF4224 at 195.334 kb on - strand, within GFF4224 at 195.393 kb on + strand, within GFF4224 at 195.394 kb on - strand, within GFF4224 at 195.394 kb on - strand, within GFF4224 at 195.400 kb on - strand, within GFF4224 at 195.400 kb on - strand, within GFF4224 at 195.400 kb on - strand, within GFF4224 at 195.400 kb on - strand, within GFF4224 at 195.724 kb on - strand, within GFF4224 at 195.950 kb on + strand at 195.951 kb on - strand at 196.257 kb on + strand, within GFF4225 at 196.257 kb on + strand, within GFF4225 at 196.257 kb on + strand, within GFF4225 at 196.258 kb on - strand, within GFF4225 at 196.611 kb on + strand, within GFF4225 at 196.763 kb on - strand at 196.763 kb on - strand at 196.843 kb on + strand at 196.843 kb on + strand at 196.844 kb on - strand at 196.847 kb on - strand at 196.902 kb on + strand at 197.044 kb on - strand at 197.088 kb on + strand at 197.089 kb on - strand at 197.175 kb on + strand at 197.176 kb on - strand at 197.253 kb on + strand, within GFF4226 at 197.253 kb on + strand, within GFF4226 at 197.253 kb on + strand, within GFF4226 at 197.253 kb on + strand, within GFF4226 at 197.254 kb on - strand, within GFF4226 at 197.324 kb on - strand, within GFF4226 at 197.324 kb on - strand, within GFF4226 at 197.367 kb on + strand, within GFF4226 at 197.368 kb on - strand, within GFF4226 at 197.368 kb on - strand, within GFF4226 at 197.368 kb on - strand, within GFF4226 at 197.368 kb on - strand, within GFF4226 at 197.368 kb on - strand, within GFF4226 at 197.406 kb on + strand, within GFF4226 at 197.782 kb on + strand, within GFF4226 at 197.782 kb on + strand, within GFF4226
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 195,015 + GFF4223 0.46 -0.0 195,138 + GFF4223 0.77 +1.1 195,333 + GFF4224 0.14 -0.6 195,333 + GFF4224 0.14 +0.5 195,334 - GFF4224 0.14 +0.5 195,334 - GFF4224 0.14 -0.7 195,393 + GFF4224 0.22 +0.7 195,394 - GFF4224 0.22 +0.1 195,394 - GFF4224 0.22 +0.1 195,400 - GFF4224 0.23 +0.1 195,400 - GFF4224 0.23 +1.2 195,400 - GFF4224 0.23 +0.3 195,400 - GFF4224 0.23 -2.0 195,724 - GFF4224 0.68 -0.4 195,950 + +0.5 195,951 - -0.8 196,257 + GFF4225 0.31 +0.2 196,257 + GFF4225 0.31 +1.0 196,257 + GFF4225 0.31 +0.2 196,258 - GFF4225 0.31 -0.6 196,611 + GFF4225 0.75 +0.9 196,763 - -0.3 196,763 - -0.9 196,843 + -0.4 196,843 + +0.5 196,844 - -1.5 196,847 - -0.2 196,902 + -0.5 197,044 - -0.1 197,088 + -1.3 197,089 - +0.1 197,175 + +0.6 197,176 - +0.5 197,253 + GFF4226 0.12 +0.3 197,253 + GFF4226 0.12 -0.6 197,253 + GFF4226 0.12 -0.8 197,253 + GFF4226 0.12 +0.1 197,254 - GFF4226 0.12 -0.7 197,324 - GFF4226 0.18 +0.1 197,324 - GFF4226 0.18 +0.2 197,367 + GFF4226 0.21 +0.3 197,368 - GFF4226 0.21 -0.8 197,368 - GFF4226 0.21 -0.8 197,368 - GFF4226 0.21 -0.2 197,368 - GFF4226 0.21 -2.6 197,368 - GFF4226 0.21 +0.9 197,406 + GFF4226 0.24 +0.7 197,782 + GFF4226 0.52 +0.3 197,782 + GFF4226 0.52 -1.8
Or see this region's nucleotide sequence