Strain Fitness in Pseudomonas sp. DMC3 around GFF4192

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4191 and GFF4192 are separated by 193 nucleotidesGFF4192 and GFF4193 are separated by 1 nucleotides GFF4191 - L-glyceraldehyde 3-phosphate reductase, at 156,806 to 157,843 GFF4191 GFF4192 - Nitrilotriacetate monooxygenase component A, at 158,037 to 159,356 GFF4192 GFF4193 - Vitamin B12 transporter BtuB, at 159,358 to 161,583 GFF4193 Position (kb) 158 159 160Strain fitness (log2 ratio) -2 -1 0 1 2at 157.143 kb on + strand, within GFF4191at 157.143 kb on + strand, within GFF4191at 157.144 kb on - strand, within GFF4191at 157.144 kb on - strand, within GFF4191at 157.144 kb on - strand, within GFF4191at 157.254 kb on + strand, within GFF4191at 157.254 kb on + strand, within GFF4191at 157.254 kb on + strand, within GFF4191at 157.255 kb on - strand, within GFF4191at 157.342 kb on + strand, within GFF4191at 157.350 kb on + strand, within GFF4191at 157.350 kb on + strand, within GFF4191at 157.350 kb on + strand, within GFF4191at 157.351 kb on - strand, within GFF4191at 157.351 kb on - strand, within GFF4191at 157.351 kb on - strand, within GFF4191at 157.351 kb on - strand, within GFF4191at 157.449 kb on + strand, within GFF4191at 157.449 kb on + strand, within GFF4191at 157.450 kb on - strand, within GFF4191at 157.450 kb on - strand, within GFF4191at 157.493 kb on + strand, within GFF4191at 157.494 kb on - strand, within GFF4191at 157.497 kb on + strand, within GFF4191at 157.497 kb on + strand, within GFF4191at 157.497 kb on + strand, within GFF4191at 157.498 kb on - strand, within GFF4191at 157.498 kb on - strand, within GFF4191at 157.498 kb on - strand, within GFF4191at 157.635 kb on + strand, within GFF4191at 157.636 kb on - strand, within GFF4191at 157.636 kb on - strand, within GFF4191at 157.647 kb on + strand, within GFF4191at 157.648 kb on - strand, within GFF4191at 157.648 kb on - strand, within GFF4191at 157.648 kb on - strand, within GFF4191at 157.816 kb on - strandat 157.836 kb on + strandat 157.836 kb on + strandat 157.836 kb on + strandat 157.836 kb on + strandat 157.836 kb on + strandat 157.836 kb on + strandat 157.837 kb on - strandat 157.837 kb on - strandat 157.867 kb on + strandat 157.867 kb on + strandat 157.867 kb on + strandat 157.867 kb on + strandat 157.867 kb on + strandat 157.868 kb on - strandat 158.098 kb on + strandat 158.098 kb on + strandat 158.098 kb on + strandat 158.099 kb on - strandat 158.099 kb on - strandat 158.099 kb on - strandat 158.139 kb on + strandat 158.140 kb on - strandat 158.413 kb on + strand, within GFF4192at 158.422 kb on - strand, within GFF4192at 158.441 kb on + strand, within GFF4192at 158.441 kb on + strand, within GFF4192at 158.441 kb on + strand, within GFF4192at 158.441 kb on + strand, within GFF4192at 158.441 kb on + strand, within GFF4192at 158.441 kb on + strand, within GFF4192at 158.442 kb on - strand, within GFF4192at 158.603 kb on + strand, within GFF4192at 158.603 kb on + strand, within GFF4192at 158.604 kb on - strand, within GFF4192at 158.612 kb on - strand, within GFF4192at 158.813 kb on - strand, within GFF4192at 158.813 kb on - strand, within GFF4192at 158.815 kb on + strand, within GFF4192at 158.948 kb on + strand, within GFF4192at 158.949 kb on - strand, within GFF4192at 159.044 kb on - strand, within GFF4192at 159.055 kb on + strand, within GFF4192at 159.117 kb on + strand, within GFF4192at 159.118 kb on - strand, within GFF4192at 159.173 kb on + strand, within GFF4192at 159.174 kb on - strand, within GFF4192at 159.247 kb on + strandat 159.247 kb on + strandat 159.247 kb on + strandat 159.247 kb on + strandat 159.248 kb on - strandat 159.419 kb on + strandat 159.419 kb on + strandat 159.419 kb on + strandat 159.420 kb on - strandat 159.425 kb on + strandat 159.425 kb on + strandat 159.425 kb on + strandat 159.426 kb on - strandat 159.426 kb on - strandat 159.426 kb on - strandat 159.426 kb on - strandat 159.426 kb on - strandat 159.426 kb on - strandat 159.426 kb on - strandat 159.426 kb on - strandat 159.426 kb on - strandat 159.426 kb on - strandat 159.426 kb on - strandat 159.455 kb on + strandat 159.455 kb on + strandat 159.456 kb on - strandat 159.456 kb on - strandat 159.456 kb on - strandat 159.510 kb on - strandat 159.631 kb on + strand, within GFF4193at 159.631 kb on + strand, within GFF4193at 159.631 kb on + strand, within GFF4193at 159.631 kb on + strand, within GFF4193at 159.632 kb on - strand, within GFF4193at 159.632 kb on - strand, within GFF4193at 159.657 kb on - strand, within GFF4193at 159.657 kb on - strand, within GFF4193at 159.657 kb on - strand, within GFF4193at 159.671 kb on + strand, within GFF4193at 159.672 kb on - strand, within GFF4193at 159.672 kb on - strand, within GFF4193at 159.672 kb on - strand, within GFF4193at 159.672 kb on - strand, within GFF4193at 159.773 kb on + strand, within GFF4193at 159.774 kb on - strand, within GFF4193at 159.774 kb on - strand, within GFF4193at 159.774 kb on - strand, within GFF4193at 159.821 kb on + strand, within GFF4193at 159.822 kb on - strand, within GFF4193at 159.914 kb on + strand, within GFF4193at 159.915 kb on - strand, within GFF4193at 159.924 kb on - strand, within GFF4193at 160.088 kb on + strand, within GFF4193at 160.089 kb on - strand, within GFF4193at 160.097 kb on + strand, within GFF4193at 160.097 kb on + strand, within GFF4193at 160.097 kb on + strand, within GFF4193at 160.098 kb on - strand, within GFF4193at 160.101 kb on + strand, within GFF4193at 160.102 kb on - strand, within GFF4193at 160.102 kb on - strand, within GFF4193at 160.111 kb on - strand, within GFF4193at 160.125 kb on - strand, within GFF4193at 160.238 kb on + strand, within GFF4193at 160.238 kb on + strand, within GFF4193at 160.238 kb on + strand, within GFF4193at 160.260 kb on - strand, within GFF4193at 160.260 kb on - strand, within GFF4193at 160.325 kb on + strand, within GFF4193at 160.326 kb on - strand, within GFF4193at 160.326 kb on - strand, within GFF4193at 160.326 kb on - strand, within GFF4193

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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157,143 + GFF4191 0.32 -0.3
157,143 + GFF4191 0.32 +0.1
157,144 - GFF4191 0.33 +0.9
157,144 - GFF4191 0.33 -0.1
157,144 - GFF4191 0.33 +2.0
157,254 + GFF4191 0.43 -1.5
157,254 + GFF4191 0.43 -0.6
157,254 + GFF4191 0.43 +0.1
157,255 - GFF4191 0.43 +1.1
157,342 + GFF4191 0.52 +0.3
157,350 + GFF4191 0.52 +0.1
157,350 + GFF4191 0.52 -1.8
157,350 + GFF4191 0.52 -0.1
157,351 - GFF4191 0.53 +0.0
157,351 - GFF4191 0.53 -0.5
157,351 - GFF4191 0.53 +0.6
157,351 - GFF4191 0.53 -0.7
157,449 + GFF4191 0.62 +0.9
157,449 + GFF4191 0.62 -1.4
157,450 - GFF4191 0.62 +0.9
157,450 - GFF4191 0.62 +1.2
157,493 + GFF4191 0.66 +0.5
157,494 - GFF4191 0.66 +1.2
157,497 + GFF4191 0.67 +0.7
157,497 + GFF4191 0.67 +0.7
157,497 + GFF4191 0.67 +1.0
157,498 - GFF4191 0.67 -0.6
157,498 - GFF4191 0.67 -0.2
157,498 - GFF4191 0.67 -0.5
157,635 + GFF4191 0.80 +1.2
157,636 - GFF4191 0.80 +1.7
157,636 - GFF4191 0.80 +0.3
157,647 + GFF4191 0.81 -0.6
157,648 - GFF4191 0.81 +0.0
157,648 - GFF4191 0.81 +1.5
157,648 - GFF4191 0.81 -0.0
157,816 - +0.1
157,836 + -0.8
157,836 + +0.1
157,836 + -0.6
157,836 + -0.2
157,836 + +0.4
157,836 + +0.7
157,837 - -0.3
157,837 - -0.7
157,867 + +0.5
157,867 + -0.2
157,867 + +0.1
157,867 + +0.9
157,867 + +0.9
157,868 - +1.1
158,098 + -1.9
158,098 + -0.4
158,098 + -0.7
158,099 - -1.2
158,099 - +1.0
158,099 - +0.3
158,139 + -0.6
158,140 - +0.4
158,413 + GFF4192 0.28 +1.2
158,422 - GFF4192 0.29 -0.6
158,441 + GFF4192 0.31 +0.9
158,441 + GFF4192 0.31 -0.6
158,441 + GFF4192 0.31 +1.2
158,441 + GFF4192 0.31 +0.6
158,441 + GFF4192 0.31 +0.9
158,441 + GFF4192 0.31 -0.7
158,442 - GFF4192 0.31 -0.8
158,603 + GFF4192 0.43 +0.5
158,603 + GFF4192 0.43 +1.3
158,604 - GFF4192 0.43 +0.2
158,612 - GFF4192 0.44 -0.2
158,813 - GFF4192 0.59 +1.0
158,813 - GFF4192 0.59 -0.3
158,815 + GFF4192 0.59 +0.1
158,948 + GFF4192 0.69 +0.1
158,949 - GFF4192 0.69 +1.3
159,044 - GFF4192 0.76 +0.3
159,055 + GFF4192 0.77 +0.7
159,117 + GFF4192 0.82 +0.2
159,118 - GFF4192 0.82 +0.7
159,173 + GFF4192 0.86 -0.3
159,174 - GFF4192 0.86 -0.3
159,247 + -1.0
159,247 + -0.3
159,247 + +0.2
159,247 + +0.8
159,248 - +0.4
159,419 + -2.4
159,419 + -0.2
159,419 + +1.0
159,420 - -0.2
159,425 + -0.7
159,425 + +0.8
159,425 + +0.3
159,426 - +0.8
159,426 - -0.9
159,426 - -0.1
159,426 - +0.3
159,426 - -1.3
159,426 - -0.9
159,426 - +0.4
159,426 - +0.4
159,426 - +0.2
159,426 - +0.2
159,426 - -0.3
159,455 + +0.8
159,455 + +0.3
159,456 - -0.8
159,456 - -0.1
159,456 - -0.7
159,510 - -0.5
159,631 + GFF4193 0.12 +0.2
159,631 + GFF4193 0.12 +0.4
159,631 + GFF4193 0.12 +0.2
159,631 + GFF4193 0.12 +0.3
159,632 - GFF4193 0.12 -0.5
159,632 - GFF4193 0.12 -0.3
159,657 - GFF4193 0.13 -0.9
159,657 - GFF4193 0.13 +0.9
159,657 - GFF4193 0.13 -0.0
159,671 + GFF4193 0.14 -0.5
159,672 - GFF4193 0.14 +0.3
159,672 - GFF4193 0.14 +0.7
159,672 - GFF4193 0.14 -0.8
159,672 - GFF4193 0.14 +1.3
159,773 + GFF4193 0.19 -0.9
159,774 - GFF4193 0.19 -0.6
159,774 - GFF4193 0.19 -0.7
159,774 - GFF4193 0.19 -0.6
159,821 + GFF4193 0.21 +0.3
159,822 - GFF4193 0.21 -0.3
159,914 + GFF4193 0.25 +0.7
159,915 - GFF4193 0.25 -0.6
159,924 - GFF4193 0.25 -0.3
160,088 + GFF4193 0.33 +0.6
160,089 - GFF4193 0.33 -0.2
160,097 + GFF4193 0.33 +0.3
160,097 + GFF4193 0.33 +0.5
160,097 + GFF4193 0.33 +0.5
160,098 - GFF4193 0.33 -1.1
160,101 + GFF4193 0.33 +0.1
160,102 - GFF4193 0.33 +0.6
160,102 - GFF4193 0.33 -0.1
160,111 - GFF4193 0.34 +1.7
160,125 - GFF4193 0.34 -0.3
160,238 + GFF4193 0.40 +0.7
160,238 + GFF4193 0.40 +0.9
160,238 + GFF4193 0.40 +0.5
160,260 - GFF4193 0.41 +0.5
160,260 - GFF4193 0.41 +0.8
160,325 + GFF4193 0.43 -1.4
160,326 - GFF4193 0.43 +0.0
160,326 - GFF4193 0.43 -0.3
160,326 - GFF4193 0.43 -0.7

Or see this region's nucleotide sequence