Strain Fitness in Pseudomonas sp. DMC3 around GFF4146

Experiment: D-Glucose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Glucose (C)
107,934	+		GFF4144	0.33	-2.0
108,009	+		GFF4144	0.70	+0.2
108,009	+		GFF4144	0.70	+1.1
108,070	+				+0.4
108,070	+				-0.0
108,070	+				+0.8
108,070	+				+0.6
108,070	+				+0.3
108,071	-				+1.0
108,071	-				+0.8
108,071	-				-0.6
108,071	-				+0.4
108,093	+				+1.2
108,093	+				+0.9
108,093	+				+0.2
108,139	+				+0.9
108,299	+		GFF4145	0.52	-0.0
108,338	+		GFF4145	0.66	-1.3
108,371	+		GFF4145	0.77	+0.5
108,371	+		GFF4145	0.77	-0.7
108,371	+		GFF4145	0.77	+0.1
108,416	+				-0.1
108,462	+				-0.4
108,527	+				+1.2
108,527	+				+0.3
108,527	+				-0.3
108,527	+				+1.2
108,528	-				+0.9
108,528	-				+0.8
108,528	-				+1.2
108,528	-				-0.4
108,528	-				-0.4
108,535	+				+0.2
108,535	+				+0.9
108,536	-				-0.5
108,539	+				-0.6
108,539	+				+0.8
108,539	+				+0.2
108,539	+				-0.2
108,539	+				+0.3
108,540	-				-1.0
108,540	-				-0.3
108,540	-				+1.7
108,540	-				+2.7
108,540	-				-0.3
108,542	+				+0.1
108,543	-				-0.7
108,543	-				-0.4
108,543	-				-0.4
108,595	+				-0.6
108,603	-				-0.3
108,626	+				+0.9
108,626	+				+0.3
108,626	+				+0.1
108,626	+				-1.5
108,626	+				+0.4
108,626	+				+0.8
108,626	+				+0.5
108,626	+				+0.3
108,627	-				-0.7
108,627	-				-0.6
108,627	-				+1.0
108,627	-				+0.3
108,627	-				-0.8
108,627	-				+0.7
108,627	-				+1.3
108,627	-				-0.4
108,627	-				-0.2
108,635	-				-0.2
108,663	+				-0.1
108,663	+				-0.2
108,663	+				-0.8
108,663	+				+0.3
108,663	+				+0.6
108,663	+				-0.5
108,663	+				-0.3
108,664	-				-0.3
108,664	-				+1.3
108,664	-				-0.9
108,664	-				-1.2
108,664	-				-0.5
108,664	-				-0.0
108,799	+				-1.5
108,799	+				-2.3
108,799	+				-0.6
108,799	+				+0.4
108,800	-				+0.1
108,814	+				-1.2
108,814	+				+1.2
108,814	+				+0.7
108,814	+				-0.2
108,814	+				-0.3
108,814	+				-0.2
108,814	+				+0.7
108,814	+				-1.9
108,814	+				-2.6
108,815	-				-1.5
108,815	-				-0.5
108,815	-				+0.2
108,815	-				-0.4
108,832	+				+0.2
108,832	+				-0.3
108,832	+				+1.4
108,832	+				-0.5
108,832	+				-0.5
108,833	-				-0.7
108,833	-				-0.4
108,833	-				-0.2
108,833	-				+0.6
108,833	-				-0.2
108,835	-				+0.0
108,835	-				-1.5
108,843	+				-0.2
108,844	-				-0.1
108,844	-				+0.5
108,867	+				-1.1
108,878	-				+0.2
108,901	+				-0.7
108,911	+				-2.3
108,911	+				-2.4
108,912	-				-0.6
108,912	-				-0.9
109,104	+		GFF4146	0.21	-0.5
109,104	+		GFF4146	0.21	-1.9
109,105	-		GFF4146	0.21	-1.1
109,105	-		GFF4146	0.21	-0.2
109,105	-		GFF4146	0.21	-0.9
109,105	-		GFF4146	0.21	-0.4
109,264	-		GFF4146	0.39	-1.0
109,282	-		GFF4146	0.41	-1.2
109,557	+		GFF4146	0.70	-1.0
109,558	-		GFF4146	0.70	-1.6
109,558	-		GFF4146	0.70	+0.2
109,696	+		GFF4146	0.85	-1.2
109,750	+				+0.2
109,750	+				-0.8
109,750	+				+0.7
109,751	-				-0.4
109,775	-				-1.5
109,775	-				-0.6
109,775	-				-1.3
109,775	-				-1.9
109,775	-				-1.2
109,775	-				-2.3
109,775	-				-0.9
109,775	-				-2.2
109,822	+				-2.7
109,822	+				-1.3
109,823	-				-1.2
109,823	-				-1.3
109,823	-				-2.6
109,823	-				-2.0
109,823	-				-2.2
109,830	+				-2.6
109,830	+				-2.6
109,830	+				-2.9
109,830	+				-2.0
109,830	+				-2.6
109,830	+				-1.2
109,830	+				-1.2
109,830	+				-3.8
109,830	+				-1.3
109,830	+				+0.2
109,830	+				-0.2
109,830	+				+0.3
109,830	+				-2.7
109,830	+				-2.7
109,831	-				-1.9
109,831	-				-3.6
109,831	-				-1.9
109,831	-				-1.5
109,831	-				-0.1
109,831	-				-2.5
109,831	-				-1.7
109,831	-				-1.5
109,831	-				-0.7
109,831	-				-2.3
109,831	-				-0.9
109,852	+		GFF4147	0.32	-0.8
109,852	+		GFF4147	0.32	-2.0
109,852	+		GFF4147	0.32	-3.4
109,853	-		GFF4147	0.33	-3.4
109,940	-		GFF4147	0.60	-3.9
109,940	-		GFF4147	0.60	-1.8
109,940	-		GFF4147	0.60	-2.3
110,066	+				-0.3
110,066	+				-2.3
110,066	+				-2.0
110,066	+				-3.6
110,066	+				-1.0
110,066	+				-1.4
110,066	+				-3.8
110,066	+				-3.0
110,066	+				-0.9
110,066	+				-0.7
110,066	+				-1.2
110,066	+				-2.2
110,066	+				-1.2
110,066	+				-0.8
110,066	+				-2.0
110,067	-				-1.2
110,067	-				-0.8
110,067	-				-1.7
110,067	-				+0.7
110,067	-				-0.2
110,067	-				-0.3
110,067	-				-1.0
110,102	+				-0.1
110,102	+				-2.3
110,102	+				-1.9
110,102	+				-1.2
110,103	-				-1.2
110,103	-				-0.9
110,103	-				-1.5
110,179	+		GFF4148	0.19	-1.9
110,208	+		GFF4148	0.23	-0.5
110,209	-		GFF4148	0.23	-1.3
110,209	-		GFF4148	0.23	-1.9
110,209	-		GFF4148	0.23	-1.0
110,209	-		GFF4148	0.23	-2.9
110,209	-		GFF4148	0.23	-2.6
110,232	+		GFF4148	0.26	-2.4
110,244	+		GFF4148	0.28	-1.6
110,265	+		GFF4148	0.31	-2.7
110,266	-		GFF4148	0.31	-1.9
110,341	-		GFF4148	0.41	-2.0
110,381	-		GFF4148	0.47	-1.9
110,419	-		GFF4148	0.52	-3.3
110,419	-		GFF4148	0.52	-1.7
110,472	+		GFF4148	0.60	-1.2
110,473	-		GFF4148	0.60	-2.3
110,473	-		GFF4148	0.60	-2.3
110,473	-		GFF4148	0.60	-1.9
110,473	-		GFF4148	0.60	-1.3
110,587	-		GFF4148	0.76	-3.3
110,587	-		GFF4148	0.76	-1.5
110,674	-		GFF4148	0.88	-2.6
110,761	+				-1.7
110,761	+				-1.5
110,761	+				-1.5
110,761	+				-1.5
110,761	+				-2.0
110,761	+				-3.3
110,761	+				-2.3
110,762	-				-1.5
110,762	-				-1.2
110,762	-				-1.3
110,762	-				-0.7
110,762	-				-2.2