Strain Fitness in Pseudomonas sp. DMC3 around GFF4059

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4058 and GFF4059 overlap by 4 nucleotidesGFF4059 and GFF4060 are separated by 68 nucleotides GFF4058 - Glycine betaine transport ATP-binding protein OpuAA, at 3,444 to 4,274 GFF4058 GFF4059 - Glycine betaine transport system permease protein OpuAB, at 4,271 to 5,122 GFF4059 GFF4060 - hypothetical protein, at 5,191 to 6,159 GFF4060 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1at 3.271 kb on + strandat 3.271 kb on + strandat 3.272 kb on - strandat 3.313 kb on + strandat 3.413 kb on + strandat 3.430 kb on + strandat 3.430 kb on + strandat 3.430 kb on + strandat 3.484 kb on + strandat 3.484 kb on + strandat 3.484 kb on + strandat 3.484 kb on + strandat 3.484 kb on + strandat 3.485 kb on - strandat 3.485 kb on - strandat 3.485 kb on - strandat 3.522 kb on - strandat 3.781 kb on + strand, within GFF4058at 3.782 kb on - strand, within GFF4058at 3.878 kb on - strand, within GFF4058at 3.980 kb on - strand, within GFF4058at 4.242 kb on + strandat 4.302 kb on + strandat 4.303 kb on - strandat 4.303 kb on - strandat 4.303 kb on - strandat 4.400 kb on + strand, within GFF4059at 4.400 kb on + strand, within GFF4059at 4.400 kb on + strand, within GFF4059at 4.632 kb on + strand, within GFF4059at 4.632 kb on + strand, within GFF4059at 4.632 kb on + strand, within GFF4059at 5.029 kb on + strand, within GFF4059at 5.030 kb on - strand, within GFF4059at 5.030 kb on - strand, within GFF4059at 5.049 kb on + strandat 5.050 kb on - strandat 5.050 kb on - strandat 5.105 kb on - strandat 5.105 kb on - strandat 5.122 kb on + strandat 5.123 kb on - strandat 5.123 kb on - strandat 5.123 kb on - strandat 5.192 kb on + strandat 5.192 kb on + strandat 5.193 kb on - strandat 5.193 kb on - strandat 5.295 kb on + strand, within GFF4060at 5.499 kb on - strand, within GFF4060at 5.501 kb on + strand, within GFF4060at 5.501 kb on + strand, within GFF4060at 5.501 kb on + strand, within GFF4060at 5.501 kb on + strand, within GFF4060at 5.501 kb on + strand, within GFF4060at 5.502 kb on - strand, within GFF4060at 5.502 kb on - strand, within GFF4060at 5.502 kb on - strand, within GFF4060at 5.583 kb on + strand, within GFF4060at 5.584 kb on - strand, within GFF4060at 5.584 kb on - strand, within GFF4060at 5.584 kb on - strand, within GFF4060at 5.584 kb on - strand, within GFF4060at 5.585 kb on + strand, within GFF4060at 5.585 kb on + strand, within GFF4060at 5.585 kb on + strand, within GFF4060at 5.586 kb on - strand, within GFF4060at 5.586 kb on - strand, within GFF4060at 5.586 kb on - strand, within GFF4060at 5.586 kb on - strand, within GFF4060at 5.604 kb on - strand, within GFF4060at 5.658 kb on + strand, within GFF4060at 5.658 kb on + strand, within GFF4060at 5.658 kb on + strand, within GFF4060at 5.659 kb on - strand, within GFF4060at 5.659 kb on - strand, within GFF4060at 5.659 kb on - strand, within GFF4060at 5.660 kb on + strand, within GFF4060at 5.660 kb on + strand, within GFF4060at 5.660 kb on + strand, within GFF4060at 5.660 kb on + strand, within GFF4060at 5.660 kb on + strand, within GFF4060at 5.660 kb on + strand, within GFF4060at 5.661 kb on - strand, within GFF4060at 5.661 kb on - strand, within GFF4060at 5.661 kb on - strand, within GFF4060at 5.661 kb on - strand, within GFF4060at 5.708 kb on + strand, within GFF4060at 5.708 kb on + strand, within GFF4060at 5.708 kb on + strand, within GFF4060at 5.708 kb on + strand, within GFF4060at 5.787 kb on - strand, within GFF4060at 5.787 kb on - strand, within GFF4060at 5.799 kb on - strand, within GFF4060at 5.799 kb on - strand, within GFF4060at 5.913 kb on + strand, within GFF4060at 6.006 kb on + strand, within GFF4060

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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3,271 + +0.9
3,271 + +0.3
3,272 - +0.4
3,313 + -0.4
3,413 + -0.7
3,430 + -0.0
3,430 + +0.4
3,430 + -0.2
3,484 + +0.7
3,484 + -1.9
3,484 + -0.3
3,484 + -0.7
3,484 + -0.1
3,485 - -0.3
3,485 - -0.0
3,485 - -0.6
3,522 - -1.5
3,781 + GFF4058 0.41 +0.4
3,782 - GFF4058 0.41 -0.0
3,878 - GFF4058 0.52 -0.3
3,980 - GFF4058 0.65 +0.4
4,242 + +0.5
4,302 + -1.4
4,303 - -0.9
4,303 - -0.5
4,303 - +0.7
4,400 + GFF4059 0.15 +0.0
4,400 + GFF4059 0.15 +0.4
4,400 + GFF4059 0.15 +0.0
4,632 + GFF4059 0.42 +0.3
4,632 + GFF4059 0.42 +0.6
4,632 + GFF4059 0.42 -0.1
5,029 + GFF4059 0.89 +1.3
5,030 - GFF4059 0.89 +0.5
5,030 - GFF4059 0.89 +0.3
5,049 + -0.3
5,050 - +0.4
5,050 - -0.0
5,105 - -0.4
5,105 - -0.1
5,122 + +0.2
5,123 - -0.1
5,123 - +0.2
5,123 - +0.7
5,192 + +0.4
5,192 + -0.1
5,193 - +0.1
5,193 - -0.1
5,295 + GFF4060 0.11 -0.4
5,499 - GFF4060 0.32 +0.2
5,501 + GFF4060 0.32 -0.6
5,501 + GFF4060 0.32 -0.7
5,501 + GFF4060 0.32 +0.3
5,501 + GFF4060 0.32 +0.6
5,501 + GFF4060 0.32 -0.5
5,502 - GFF4060 0.32 +0.9
5,502 - GFF4060 0.32 -0.3
5,502 - GFF4060 0.32 +0.5
5,583 + GFF4060 0.40 +0.3
5,584 - GFF4060 0.41 +1.4
5,584 - GFF4060 0.41 +0.1
5,584 - GFF4060 0.41 -0.3
5,584 - GFF4060 0.41 +0.1
5,585 + GFF4060 0.41 +0.3
5,585 + GFF4060 0.41 -0.0
5,585 + GFF4060 0.41 +0.6
5,586 - GFF4060 0.41 +0.2
5,586 - GFF4060 0.41 +1.0
5,586 - GFF4060 0.41 -0.4
5,586 - GFF4060 0.41 +0.4
5,604 - GFF4060 0.43 +0.1
5,658 + GFF4060 0.48 +0.0
5,658 + GFF4060 0.48 -0.7
5,658 + GFF4060 0.48 +0.3
5,659 - GFF4060 0.48 -0.4
5,659 - GFF4060 0.48 -0.3
5,659 - GFF4060 0.48 +0.4
5,660 + GFF4060 0.48 +1.5
5,660 + GFF4060 0.48 +0.9
5,660 + GFF4060 0.48 -0.2
5,660 + GFF4060 0.48 -0.4
5,660 + GFF4060 0.48 -0.7
5,660 + GFF4060 0.48 -0.3
5,661 - GFF4060 0.49 -0.1
5,661 - GFF4060 0.49 -1.9
5,661 - GFF4060 0.49 -0.3
5,661 - GFF4060 0.49 -0.3
5,708 + GFF4060 0.53 +0.2
5,708 + GFF4060 0.53 -1.2
5,708 + GFF4060 0.53 +0.1
5,708 + GFF4060 0.53 +0.4
5,787 - GFF4060 0.62 -0.4
5,787 - GFF4060 0.62 +0.2
5,799 - GFF4060 0.63 -0.3
5,799 - GFF4060 0.63 -1.3
5,913 + GFF4060 0.75 +0.0
6,006 + GFF4060 0.84 -0.0

Or see this region's nucleotide sequence