Strain Fitness in Pseudomonas sp. DMC3 around GFF4053

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4052 and GFF4053 are separated by 148 nucleotidesGFF4053 and GFF4054 are separated by 63 nucleotides GFF4052 - Ketol-acid reductoisomerase (NADP(+)), at 317,226 to 318,242 GFF4052 GFF4053 - hypothetical protein, at 318,391 to 319,248 GFF4053 GFF4054 - Protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 319,312 to 320,325 GFF4054 Position (kb) 318 319 320Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 317.490 kb on + strand, within GFF4052at 317.491 kb on - strand, within GFF4052at 317.562 kb on + strand, within GFF4052at 317.563 kb on - strand, within GFF4052at 317.563 kb on - strand, within GFF4052at 317.682 kb on + strand, within GFF4052at 317.683 kb on - strand, within GFF4052at 317.896 kb on - strand, within GFF4052at 317.940 kb on + strand, within GFF4052at 317.940 kb on + strand, within GFF4052at 317.940 kb on + strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.941 kb on - strand, within GFF4052at 317.967 kb on + strand, within GFF4052at 317.967 kb on + strand, within GFF4052at 317.967 kb on + strand, within GFF4052at 317.968 kb on - strand, within GFF4052at 317.968 kb on - strand, within GFF4052at 317.968 kb on - strand, within GFF4052at 318.000 kb on + strand, within GFF4052at 318.001 kb on - strand, within GFF4052at 318.065 kb on + strand, within GFF4052at 318.066 kb on - strand, within GFF4052at 318.066 kb on - strand, within GFF4052at 318.066 kb on - strand, within GFF4052at 318.081 kb on + strand, within GFF4052at 318.143 kb on + strandat 318.144 kb on - strandat 318.257 kb on + strandat 318.311 kb on + strandat 318.311 kb on + strandat 318.311 kb on + strandat 318.311 kb on + strandat 318.311 kb on + strandat 318.312 kb on - strandat 318.312 kb on - strandat 318.312 kb on - strandat 318.383 kb on + strandat 318.383 kb on + strandat 318.383 kb on + strandat 318.384 kb on - strandat 318.384 kb on - strandat 318.489 kb on + strand, within GFF4053at 318.489 kb on + strand, within GFF4053at 318.489 kb on + strand, within GFF4053at 318.507 kb on + strand, within GFF4053at 318.507 kb on + strand, within GFF4053at 318.508 kb on - strand, within GFF4053at 318.508 kb on - strand, within GFF4053at 318.511 kb on + strand, within GFF4053at 318.511 kb on + strand, within GFF4053at 318.512 kb on - strand, within GFF4053at 318.512 kb on - strand, within GFF4053at 318.512 kb on - strand, within GFF4053at 318.512 kb on - strand, within GFF4053at 318.512 kb on - strand, within GFF4053at 318.512 kb on - strand, within GFF4053at 318.559 kb on + strand, within GFF4053at 318.559 kb on + strand, within GFF4053at 318.628 kb on + strand, within GFF4053at 318.628 kb on + strand, within GFF4053at 318.629 kb on - strand, within GFF4053at 318.629 kb on - strand, within GFF4053at 318.629 kb on - strand, within GFF4053at 318.709 kb on - strand, within GFF4053at 318.839 kb on + strand, within GFF4053at 318.839 kb on + strand, within GFF4053at 318.839 kb on + strand, within GFF4053at 318.839 kb on + strand, within GFF4053at 318.839 kb on + strand, within GFF4053at 318.839 kb on + strand, within GFF4053at 318.839 kb on + strand, within GFF4053at 318.839 kb on + strand, within GFF4053at 318.840 kb on - strand, within GFF4053at 318.840 kb on - strand, within GFF4053at 318.840 kb on - strand, within GFF4053at 318.840 kb on - strand, within GFF4053at 318.840 kb on - strand, within GFF4053at 318.840 kb on - strand, within GFF4053at 318.840 kb on - strand, within GFF4053at 318.840 kb on - strand, within GFF4053at 318.840 kb on - strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.841 kb on + strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.842 kb on - strand, within GFF4053at 318.845 kb on + strand, within GFF4053at 318.845 kb on + strand, within GFF4053at 318.846 kb on - strand, within GFF4053at 318.846 kb on - strand, within GFF4053at 318.846 kb on - strand, within GFF4053at 318.846 kb on - strand, within GFF4053at 318.907 kb on + strand, within GFF4053at 318.907 kb on + strand, within GFF4053at 319.060 kb on + strand, within GFF4053at 319.060 kb on + strand, within GFF4053at 319.061 kb on - strand, within GFF4053at 319.130 kb on + strand, within GFF4053at 319.186 kb on + strandat 319.187 kb on - strandat 319.187 kb on - strandat 319.187 kb on - strandat 319.210 kb on + strandat 319.211 kb on - strandat 319.275 kb on + strandat 319.275 kb on + strandat 319.276 kb on - strandat 319.375 kb on + strandat 319.375 kb on + strandat 319.375 kb on + strandat 319.375 kb on + strandat 319.375 kb on + strandat 319.375 kb on + strandat 319.375 kb on + strandat 319.375 kb on + strandat 319.375 kb on + strandat 319.376 kb on - strandat 319.376 kb on - strandat 319.376 kb on - strandat 319.417 kb on - strand, within GFF4054at 319.468 kb on + strand, within GFF4054at 319.468 kb on + strand, within GFF4054at 319.524 kb on + strand, within GFF4054at 319.524 kb on + strand, within GFF4054at 319.525 kb on - strand, within GFF4054at 319.570 kb on + strand, within GFF4054at 319.570 kb on + strand, within GFF4054at 319.570 kb on + strand, within GFF4054at 319.570 kb on + strand, within GFF4054at 319.571 kb on - strand, within GFF4054at 319.571 kb on - strand, within GFF4054at 319.572 kb on + strand, within GFF4054at 319.572 kb on + strand, within GFF4054at 319.572 kb on + strand, within GFF4054at 319.572 kb on + strand, within GFF4054at 319.572 kb on + strand, within GFF4054at 319.573 kb on - strand, within GFF4054at 319.573 kb on - strand, within GFF4054at 319.573 kb on - strand, within GFF4054at 319.588 kb on + strand, within GFF4054at 319.589 kb on - strand, within GFF4054at 319.589 kb on - strand, within GFF4054at 319.692 kb on + strand, within GFF4054at 319.705 kb on + strand, within GFF4054at 319.749 kb on + strand, within GFF4054at 319.749 kb on + strand, within GFF4054at 319.749 kb on + strand, within GFF4054at 319.749 kb on + strand, within GFF4054at 319.749 kb on + strand, within GFF4054at 319.750 kb on - strand, within GFF4054at 319.750 kb on - strand, within GFF4054at 319.750 kb on - strand, within GFF4054at 319.753 kb on + strand, within GFF4054at 319.753 kb on + strand, within GFF4054at 319.754 kb on - strand, within GFF4054at 319.855 kb on + strand, within GFF4054at 319.855 kb on + strand, within GFF4054at 319.855 kb on + strand, within GFF4054at 319.855 kb on + strand, within GFF4054at 319.856 kb on - strand, within GFF4054at 319.856 kb on - strand, within GFF4054at 319.856 kb on - strand, within GFF4054at 319.856 kb on - strand, within GFF4054at 319.856 kb on - strand, within GFF4054at 319.856 kb on - strand, within GFF4054at 319.856 kb on - strand, within GFF4054at 319.933 kb on + strand, within GFF4054at 319.934 kb on - strand, within GFF4054at 319.934 kb on - strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.996 kb on + strand, within GFF4054at 319.997 kb on - strand, within GFF4054at 319.997 kb on - strand, within GFF4054at 319.997 kb on - strand, within GFF4054at 319.997 kb on - strand, within GFF4054at 319.997 kb on - strand, within GFF4054at 319.997 kb on - strand, within GFF4054at 319.997 kb on - strand, within GFF4054at 319.997 kb on - strand, within GFF4054at 319.997 kb on - strand, within GFF4054at 319.997 kb on - strand, within GFF4054at 319.997 kb on - strand, within GFF4054at 320.056 kb on + strand, within GFF4054at 320.057 kb on - strand, within GFF4054at 320.057 kb on - strand, within GFF4054at 320.146 kb on + strand, within GFF4054at 320.146 kb on + strand, within GFF4054at 320.147 kb on - strand, within GFF4054at 320.156 kb on - strand, within GFF4054at 320.173 kb on - strand, within GFF4054

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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317,490 + GFF4052 0.26 -0.4
317,491 - GFF4052 0.26 -1.9
317,562 + GFF4052 0.33 -2.7
317,563 - GFF4052 0.33 -1.2
317,563 - GFF4052 0.33 -4.5
317,682 + GFF4052 0.45 -2.0
317,683 - GFF4052 0.45 -3.3
317,896 - GFF4052 0.66 -3.7
317,940 + GFF4052 0.70 -3.0
317,940 + GFF4052 0.70 -2.6
317,940 + GFF4052 0.70 -3.1
317,941 - GFF4052 0.70 -3.1
317,941 - GFF4052 0.70 -2.3
317,941 - GFF4052 0.70 -1.6
317,941 - GFF4052 0.70 -3.9
317,941 - GFF4052 0.70 -3.9
317,941 - GFF4052 0.70 -2.7
317,941 - GFF4052 0.70 -2.3
317,967 + GFF4052 0.73 -2.3
317,967 + GFF4052 0.73 -3.0
317,967 + GFF4052 0.73 -0.7
317,968 - GFF4052 0.73 -1.2
317,968 - GFF4052 0.73 -2.6
317,968 - GFF4052 0.73 -3.3
318,000 + GFF4052 0.76 -2.6
318,001 - GFF4052 0.76 -1.6
318,065 + GFF4052 0.82 -1.7
318,066 - GFF4052 0.83 -3.8
318,066 - GFF4052 0.83 -3.5
318,066 - GFF4052 0.83 -1.9
318,081 + GFF4052 0.84 -3.1
318,143 + -3.2
318,144 - -4.1
318,257 + -0.2
318,311 + -0.4
318,311 + +0.3
318,311 + +1.3
318,311 + +0.3
318,311 + -0.1
318,312 - +1.1
318,312 - +0.3
318,312 - +0.7
318,383 + +1.3
318,383 + +0.3
318,383 + +0.5
318,384 - -1.0
318,384 - +0.4
318,489 + GFF4053 0.11 +0.7
318,489 + GFF4053 0.11 +1.4
318,489 + GFF4053 0.11 +1.0
318,507 + GFF4053 0.14 -0.2
318,507 + GFF4053 0.14 +0.6
318,508 - GFF4053 0.14 -0.2
318,508 - GFF4053 0.14 +0.6
318,511 + GFF4053 0.14 -2.1
318,511 + GFF4053 0.14 +1.2
318,512 - GFF4053 0.14 +0.6
318,512 - GFF4053 0.14 +0.4
318,512 - GFF4053 0.14 +0.6
318,512 - GFF4053 0.14 +1.2
318,512 - GFF4053 0.14 +0.8
318,512 - GFF4053 0.14 -0.1
318,559 + GFF4053 0.20 +0.0
318,559 + GFF4053 0.20 +0.6
318,628 + GFF4053 0.28 +0.8
318,628 + GFF4053 0.28 +0.6
318,629 - GFF4053 0.28 +0.7
318,629 - GFF4053 0.28 -0.4
318,629 - GFF4053 0.28 -0.4
318,709 - GFF4053 0.37 +0.8
318,839 + GFF4053 0.52 +0.5
318,839 + GFF4053 0.52 -1.0
318,839 + GFF4053 0.52 +0.7
318,839 + GFF4053 0.52 -0.6
318,839 + GFF4053 0.52 -1.6
318,839 + GFF4053 0.52 +0.0
318,839 + GFF4053 0.52 -0.7
318,839 + GFF4053 0.52 +0.3
318,840 - GFF4053 0.52 +1.0
318,840 - GFF4053 0.52 +0.4
318,840 - GFF4053 0.52 +0.0
318,840 - GFF4053 0.52 +1.5
318,840 - GFF4053 0.52 +0.1
318,840 - GFF4053 0.52 +1.3
318,840 - GFF4053 0.52 +1.2
318,840 - GFF4053 0.52 -0.9
318,840 - GFF4053 0.52 -1.4
318,841 + GFF4053 0.52 +0.7
318,841 + GFF4053 0.52 +1.4
318,841 + GFF4053 0.52 +0.5
318,841 + GFF4053 0.52 -0.6
318,841 + GFF4053 0.52 +0.6
318,841 + GFF4053 0.52 +0.0
318,841 + GFF4053 0.52 -1.7
318,841 + GFF4053 0.52 +1.1
318,841 + GFF4053 0.52 -0.4
318,841 + GFF4053 0.52 -0.7
318,841 + GFF4053 0.52 +1.2
318,841 + GFF4053 0.52 +0.2
318,841 + GFF4053 0.52 -0.4
318,841 + GFF4053 0.52 +1.2
318,841 + GFF4053 0.52 +1.8
318,842 - GFF4053 0.53 +0.8
318,842 - GFF4053 0.53 +0.5
318,842 - GFF4053 0.53 +0.8
318,842 - GFF4053 0.53 +1.4
318,842 - GFF4053 0.53 +0.6
318,842 - GFF4053 0.53 +1.0
318,842 - GFF4053 0.53 +2.2
318,842 - GFF4053 0.53 +0.4
318,842 - GFF4053 0.53 -0.7
318,842 - GFF4053 0.53 +1.2
318,842 - GFF4053 0.53 +1.6
318,842 - GFF4053 0.53 -2.2
318,842 - GFF4053 0.53 +0.9
318,842 - GFF4053 0.53 -0.3
318,842 - GFF4053 0.53 -1.0
318,845 + GFF4053 0.53 -0.4
318,845 + GFF4053 0.53 -1.1
318,846 - GFF4053 0.53 +1.0
318,846 - GFF4053 0.53 +1.9
318,846 - GFF4053 0.53 +0.0
318,846 - GFF4053 0.53 -0.3
318,907 + GFF4053 0.60 +0.6
318,907 + GFF4053 0.60 -0.9
319,060 + GFF4053 0.78 -0.6
319,060 + GFF4053 0.78 +1.0
319,061 - GFF4053 0.78 +1.3
319,130 + GFF4053 0.86 +1.8
319,186 + -1.2
319,187 - -0.5
319,187 - +1.1
319,187 - +0.2
319,210 + -0.0
319,211 - +1.4
319,275 + +0.3
319,275 + -0.1
319,276 - -1.3
319,375 + +0.8
319,375 + -1.5
319,375 + +0.9
319,375 + -0.2
319,375 + +1.3
319,375 + -0.5
319,375 + +0.5
319,375 + +1.4
319,375 + +0.3
319,376 - +1.6
319,376 - -0.7
319,376 - +0.0
319,417 - GFF4054 0.10 -0.8
319,468 + GFF4054 0.15 +0.5
319,468 + GFF4054 0.15 +1.2
319,524 + GFF4054 0.21 +0.3
319,524 + GFF4054 0.21 +0.3
319,525 - GFF4054 0.21 -0.6
319,570 + GFF4054 0.25 -1.6
319,570 + GFF4054 0.25 -0.2
319,570 + GFF4054 0.25 -0.7
319,570 + GFF4054 0.25 +0.2
319,571 - GFF4054 0.26 +0.5
319,571 - GFF4054 0.26 +1.3
319,572 + GFF4054 0.26 +0.6
319,572 + GFF4054 0.26 -0.4
319,572 + GFF4054 0.26 +0.0
319,572 + GFF4054 0.26 -0.7
319,572 + GFF4054 0.26 +1.6
319,573 - GFF4054 0.26 +0.6
319,573 - GFF4054 0.26 +0.7
319,573 - GFF4054 0.26 +0.0
319,588 + GFF4054 0.27 +0.6
319,589 - GFF4054 0.27 +0.3
319,589 - GFF4054 0.27 +0.9
319,692 + GFF4054 0.37 +0.4
319,705 + GFF4054 0.39 -0.5
319,749 + GFF4054 0.43 -2.1
319,749 + GFF4054 0.43 -0.0
319,749 + GFF4054 0.43 +0.4
319,749 + GFF4054 0.43 -0.8
319,749 + GFF4054 0.43 +0.3
319,750 - GFF4054 0.43 +0.6
319,750 - GFF4054 0.43 +0.9
319,750 - GFF4054 0.43 -0.4
319,753 + GFF4054 0.43 -1.3
319,753 + GFF4054 0.43 -0.9
319,754 - GFF4054 0.44 -1.0
319,855 + GFF4054 0.54 +0.7
319,855 + GFF4054 0.54 -0.1
319,855 + GFF4054 0.54 +0.1
319,855 + GFF4054 0.54 +0.1
319,856 - GFF4054 0.54 +1.4
319,856 - GFF4054 0.54 +0.2
319,856 - GFF4054 0.54 +1.3
319,856 - GFF4054 0.54 -0.7
319,856 - GFF4054 0.54 +0.0
319,856 - GFF4054 0.54 -0.0
319,856 - GFF4054 0.54 -0.7
319,933 + GFF4054 0.61 +0.4
319,934 - GFF4054 0.61 +0.9
319,934 - GFF4054 0.61 +0.1
319,996 + GFF4054 0.67 +0.7
319,996 + GFF4054 0.67 +0.8
319,996 + GFF4054 0.67 +0.7
319,996 + GFF4054 0.67 -0.2
319,996 + GFF4054 0.67 -0.4
319,996 + GFF4054 0.67 +0.5
319,996 + GFF4054 0.67 +1.0
319,996 + GFF4054 0.67 +0.4
319,996 + GFF4054 0.67 +0.2
319,996 + GFF4054 0.67 -0.3
319,996 + GFF4054 0.67 +0.3
319,996 + GFF4054 0.67 -0.6
319,997 - GFF4054 0.68 +0.3
319,997 - GFF4054 0.68 +0.4
319,997 - GFF4054 0.68 +0.2
319,997 - GFF4054 0.68 +0.4
319,997 - GFF4054 0.68 -0.1
319,997 - GFF4054 0.68 +0.1
319,997 - GFF4054 0.68 +0.3
319,997 - GFF4054 0.68 +0.0
319,997 - GFF4054 0.68 +0.5
319,997 - GFF4054 0.68 -1.6
319,997 - GFF4054 0.68 -0.4
320,056 + GFF4054 0.73 +1.3
320,057 - GFF4054 0.73 -0.2
320,057 - GFF4054 0.73 -0.0
320,146 + GFF4054 0.82 +0.8
320,146 + GFF4054 0.82 -0.6
320,147 - GFF4054 0.82 +0.7
320,156 - GFF4054 0.83 -0.7
320,173 - GFF4054 0.85 -1.0

Or see this region's nucleotide sequence