Strain Fitness in Pseudomonas sp. DMC3 around GFF4049

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF4047 and GFF4048 overlap by 1 nucleotidesGFF4048 and GFF4049 are separated by 22 nucleotidesGFF4049 and GFF4050 are separated by 399 nucleotides GFF4047 - hypothetical protein, at 313,038 to 313,787 GFF4047 GFF4048 - hypothetical protein, at 313,787 to 314,122 GFF4048 GFF4049 - hypothetical protein, at 314,145 to 314,561 GFF4049 GFF4050 - Acetolactate synthase isozyme 3 large subunit, at 314,961 to 316,685 GFF4050 Position (kb) 314 315Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 313.247 kb on - strand, within GFF4047at 313.249 kb on + strand, within GFF4047at 313.249 kb on + strand, within GFF4047at 313.249 kb on + strand, within GFF4047at 313.249 kb on + strand, within GFF4047at 313.249 kb on + strand, within GFF4047at 313.249 kb on + strand, within GFF4047at 313.249 kb on + strand, within GFF4047at 313.249 kb on + strand, within GFF4047at 313.249 kb on + strand, within GFF4047at 313.249 kb on + strand, within GFF4047at 313.249 kb on + strand, within GFF4047at 313.250 kb on - strand, within GFF4047at 313.250 kb on - strand, within GFF4047at 313.250 kb on - strand, within GFF4047at 313.250 kb on - strand, within GFF4047at 313.250 kb on - strand, within GFF4047at 313.250 kb on - strand, within GFF4047at 313.253 kb on + strand, within GFF4047at 313.253 kb on + strand, within GFF4047at 313.253 kb on + strand, within GFF4047at 313.254 kb on - strand, within GFF4047at 313.254 kb on - strand, within GFF4047at 313.254 kb on - strand, within GFF4047at 313.331 kb on + strand, within GFF4047at 313.332 kb on - strand, within GFF4047at 313.347 kb on + strand, within GFF4047at 313.347 kb on + strand, within GFF4047at 313.347 kb on + strand, within GFF4047at 313.347 kb on + strand, within GFF4047at 313.347 kb on + strand, within GFF4047at 313.347 kb on + strand, within GFF4047at 313.348 kb on - strand, within GFF4047at 313.348 kb on - strand, within GFF4047at 313.348 kb on - strand, within GFF4047at 313.392 kb on + strand, within GFF4047at 313.392 kb on + strand, within GFF4047at 313.392 kb on + strand, within GFF4047at 313.393 kb on - strand, within GFF4047at 313.393 kb on - strand, within GFF4047at 313.393 kb on - strand, within GFF4047at 313.393 kb on - strand, within GFF4047at 313.393 kb on - strand, within GFF4047at 313.393 kb on - strand, within GFF4047at 313.890 kb on + strand, within GFF4048at 314.125 kb on + strandat 314.125 kb on + strandat 314.125 kb on + strandat 314.126 kb on - strandat 314.147 kb on - strandat 314.204 kb on + strand, within GFF4049at 314.204 kb on + strand, within GFF4049at 314.424 kb on + strand, within GFF4049at 314.424 kb on + strand, within GFF4049at 314.424 kb on + strand, within GFF4049at 314.425 kb on - strand, within GFF4049at 314.439 kb on + strand, within GFF4049at 314.497 kb on + strand, within GFF4049at 314.497 kb on + strand, within GFF4049at 314.596 kb on - strandat 314.651 kb on + strandat 314.709 kb on + strandat 314.709 kb on + strandat 314.773 kb on + strandat 314.774 kb on - strandat 314.837 kb on + strandat 314.837 kb on + strandat 314.838 kb on - strandat 314.838 kb on - strandat 314.860 kb on + strandat 314.861 kb on - strandat 314.861 kb on - strandat 314.898 kb on + strandat 314.899 kb on - strandat 314.899 kb on - strandat 314.899 kb on - strandat 314.899 kb on - strandat 314.899 kb on - strandat 314.904 kb on + strandat 314.904 kb on + strandat 314.904 kb on + strandat 314.905 kb on - strandat 314.905 kb on - strandat 314.905 kb on - strandat 314.905 kb on - strandat 314.905 kb on - strandat 314.905 kb on - strandat 314.905 kb on - strandat 314.907 kb on + strandat 314.907 kb on + strandat 314.907 kb on + strandat 314.935 kb on - strandat 314.972 kb on - strandat 314.972 kb on - strandat 315.021 kb on + strandat 315.021 kb on + strandat 315.021 kb on + strandat 315.021 kb on + strandat 315.021 kb on + strandat 315.021 kb on + strandat 315.021 kb on + strandat 315.022 kb on - strandat 315.022 kb on - strandat 315.022 kb on - strandat 315.022 kb on - strandat 315.022 kb on - strandat 315.022 kb on - strandat 315.022 kb on - strandat 315.022 kb on - strandat 315.023 kb on + strandat 315.023 kb on + strandat 315.023 kb on + strandat 315.023 kb on + strandat 315.023 kb on + strandat 315.024 kb on - strandat 315.024 kb on - strandat 315.024 kb on - strandat 315.027 kb on + strandat 315.027 kb on + strandat 315.027 kb on + strandat 315.027 kb on + strandat 315.027 kb on + strandat 315.060 kb on + strandat 315.060 kb on + strandat 315.060 kb on + strandat 315.129 kb on - strandat 315.172 kb on + strand, within GFF4050at 315.172 kb on + strand, within GFF4050at 315.173 kb on - strand, within GFF4050at 315.173 kb on - strand, within GFF4050at 315.215 kb on + strand, within GFF4050at 315.228 kb on + strand, within GFF4050at 315.228 kb on + strand, within GFF4050at 315.228 kb on + strand, within GFF4050at 315.228 kb on + strand, within GFF4050at 315.228 kb on + strand, within GFF4050at 315.229 kb on - strand, within GFF4050at 315.230 kb on + strand, within GFF4050at 315.230 kb on + strand, within GFF4050at 315.399 kb on + strand, within GFF4050at 315.399 kb on + strand, within GFF4050at 315.399 kb on + strand, within GFF4050at 315.399 kb on + strand, within GFF4050at 315.400 kb on - strand, within GFF4050at 315.400 kb on - strand, within GFF4050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
313,247 - GFF4047 0.28 -0.1
313,249 + GFF4047 0.28 +0.7
313,249 + GFF4047 0.28 +0.3
313,249 + GFF4047 0.28 -0.4
313,249 + GFF4047 0.28 +0.3
313,249 + GFF4047 0.28 +0.1
313,249 + GFF4047 0.28 +1.5
313,249 + GFF4047 0.28 -1.0
313,249 + GFF4047 0.28 +0.3
313,249 + GFF4047 0.28 +0.2
313,249 + GFF4047 0.28 +1.0
313,249 + GFF4047 0.28 +0.0
313,250 - GFF4047 0.28 +0.5
313,250 - GFF4047 0.28 +0.1
313,250 - GFF4047 0.28 +1.2
313,250 - GFF4047 0.28 +0.3
313,250 - GFF4047 0.28 +0.4
313,250 - GFF4047 0.28 -0.2
313,253 + GFF4047 0.29 -1.0
313,253 + GFF4047 0.29 +0.8
313,253 + GFF4047 0.29 +0.0
313,254 - GFF4047 0.29 +0.4
313,254 - GFF4047 0.29 +0.0
313,254 - GFF4047 0.29 +0.9
313,331 + GFF4047 0.39 -0.3
313,332 - GFF4047 0.39 -1.0
313,347 + GFF4047 0.41 +0.7
313,347 + GFF4047 0.41 -0.0
313,347 + GFF4047 0.41 +1.1
313,347 + GFF4047 0.41 +0.0
313,347 + GFF4047 0.41 +1.0
313,347 + GFF4047 0.41 +0.6
313,348 - GFF4047 0.41 -1.4
313,348 - GFF4047 0.41 -0.1
313,348 - GFF4047 0.41 +0.6
313,392 + GFF4047 0.47 +2.9
313,392 + GFF4047 0.47 +0.4
313,392 + GFF4047 0.47 +0.9
313,393 - GFF4047 0.47 -0.3
313,393 - GFF4047 0.47 -0.1
313,393 - GFF4047 0.47 +2.2
313,393 - GFF4047 0.47 -0.7
313,393 - GFF4047 0.47 -0.1
313,393 - GFF4047 0.47 -1.6
313,890 + GFF4048 0.31 +1.2
314,125 + -0.1
314,125 + -0.9
314,125 + +0.3
314,126 - +2.2
314,147 - -0.0
314,204 + GFF4049 0.14 +0.9
314,204 + GFF4049 0.14 +0.6
314,424 + GFF4049 0.67 -0.4
314,424 + GFF4049 0.67 +1.2
314,424 + GFF4049 0.67 -0.1
314,425 - GFF4049 0.67 -1.0
314,439 + GFF4049 0.71 +0.6
314,497 + GFF4049 0.84 +0.9
314,497 + GFF4049 0.84 +0.1
314,596 - -0.7
314,651 + -0.1
314,709 + +0.0
314,709 + -0.4
314,773 + -1.1
314,774 - -0.4
314,837 + +0.2
314,837 + +1.0
314,838 - -3.1
314,838 - -2.3
314,860 + -1.7
314,861 - -1.6
314,861 - -1.7
314,898 + +0.8
314,899 - -2.9
314,899 - -1.4
314,899 - -2.1
314,899 - +0.6
314,899 - -1.4
314,904 + +0.6
314,904 + +0.3
314,904 + -1.2
314,905 - -1.7
314,905 - -3.0
314,905 - -2.1
314,905 - -2.1
314,905 - -1.9
314,905 - -1.9
314,905 - -1.7
314,907 + -0.0
314,907 + -1.5
314,907 + -0.5
314,935 - -0.7
314,972 - -1.0
314,972 - -1.7
315,021 + -1.6
315,021 + -2.1
315,021 + -0.7
315,021 + -1.4
315,021 + -0.4
315,021 + -1.2
315,021 + -1.2
315,022 - -1.7
315,022 - -1.2
315,022 - -2.3
315,022 - -0.7
315,022 - -1.0
315,022 - -2.6
315,022 - -1.6
315,022 - -1.6
315,023 + -1.6
315,023 + -1.7
315,023 + -1.2
315,023 + -1.0
315,023 + -2.2
315,024 - -1.0
315,024 - -1.2
315,024 - -1.0
315,027 + -1.7
315,027 + -1.4
315,027 + -0.4
315,027 + -1.0
315,027 + -0.7
315,060 + -0.4
315,060 + -1.2
315,060 + -2.9
315,129 - -0.4
315,172 + GFF4050 0.12 -1.9
315,172 + GFF4050 0.12 -0.4
315,173 - GFF4050 0.12 -1.4
315,173 - GFF4050 0.12 -2.0
315,215 + GFF4050 0.15 -1.7
315,228 + GFF4050 0.15 -0.7
315,228 + GFF4050 0.15 -0.7
315,228 + GFF4050 0.15 -0.4
315,228 + GFF4050 0.15 -2.5
315,228 + GFF4050 0.15 -1.4
315,229 - GFF4050 0.16 -0.7
315,230 + GFF4050 0.16 -1.0
315,230 + GFF4050 0.16 -0.4
315,399 + GFF4050 0.25 -1.2
315,399 + GFF4050 0.25 -1.4
315,399 + GFF4050 0.25 -0.7
315,399 + GFF4050 0.25 -2.5
315,400 - GFF4050 0.25 -1.9
315,400 - GFF4050 0.25 -1.4

Or see this region's nucleotide sequence