Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3966 and GFF3967 overlap by 4 nucleotides GFF3967 and GFF3968 are separated by 70 nucleotides GFF3968 and GFF3969 are separated by 219 nucleotides
GFF3966 - NADP-specific glutamate dehydrogenase, at 225,625 to 226,962
GFF3966
GFF3967 - Transcription elongation factor GreB, at 226,959 to 227,453
GFF3967
GFF3968 - hypothetical protein, at 227,524 to 227,880
GFF3968
GFF3969 - hypothetical protein, at 228,100 to 229,953
GFF3969
Position (kb) 226
227
228 Strain fitness (log2 ratio) -1
0
1
2 at 226.165 kb on + strand, within GFF3966 at 226.165 kb on + strand, within GFF3966 at 226.165 kb on + strand, within GFF3966 at 226.165 kb on + strand, within GFF3966 at 226.220 kb on - strand, within GFF3966 at 226.424 kb on - strand, within GFF3966 at 226.622 kb on + strand, within GFF3966 at 226.622 kb on + strand, within GFF3966 at 226.864 kb on + strand at 226.891 kb on + strand at 226.891 kb on + strand at 226.892 kb on - strand at 226.892 kb on - strand at 226.892 kb on - strand at 227.016 kb on + strand, within GFF3967 at 227.368 kb on + strand, within GFF3967 at 227.368 kb on + strand, within GFF3967 at 227.368 kb on + strand, within GFF3967 at 227.368 kb on + strand, within GFF3967 at 227.369 kb on - strand, within GFF3967 at 227.369 kb on - strand, within GFF3967 at 227.467 kb on + strand at 227.526 kb on - strand at 227.526 kb on - strand at 227.526 kb on - strand at 227.537 kb on + strand at 227.610 kb on - strand, within GFF3968 at 227.610 kb on - strand, within GFF3968 at 227.679 kb on - strand, within GFF3968 at 227.848 kb on + strand at 227.848 kb on + strand at 227.848 kb on + strand at 227.848 kb on + strand at 227.849 kb on - strand at 227.849 kb on - strand at 227.849 kb on - strand at 227.849 kb on - strand at 227.849 kb on - strand at 227.849 kb on - strand at 227.921 kb on + strand at 227.922 kb on - strand at 227.922 kb on - strand at 228.031 kb on + strand at 228.031 kb on + strand at 228.031 kb on + strand at 228.031 kb on + strand at 228.031 kb on + strand at 228.032 kb on - strand at 228.032 kb on - strand at 228.032 kb on - strand at 228.032 kb on - strand at 228.032 kb on - strand at 228.032 kb on - strand at 228.032 kb on - strand at 228.034 kb on + strand at 228.034 kb on + strand at 228.034 kb on + strand at 228.034 kb on + strand at 228.034 kb on + strand at 228.035 kb on - strand at 228.035 kb on - strand at 228.035 kb on - strand at 228.085 kb on + strand at 228.086 kb on - strand at 228.086 kb on - strand at 228.104 kb on + strand at 228.105 kb on - strand at 228.110 kb on + strand at 228.110 kb on + strand at 228.110 kb on + strand at 228.111 kb on - strand at 228.111 kb on - strand at 228.111 kb on - strand at 228.111 kb on - strand at 228.257 kb on + strand at 228.258 kb on - strand at 228.360 kb on + strand, within GFF3969 at 228.360 kb on + strand, within GFF3969 at 228.360 kb on + strand, within GFF3969 at 228.361 kb on - strand, within GFF3969 at 228.361 kb on - strand, within GFF3969 at 228.361 kb on - strand, within GFF3969 at 228.361 kb on - strand, within GFF3969 at 228.361 kb on - strand, within GFF3969 at 228.361 kb on - strand, within GFF3969 at 228.361 kb on - strand, within GFF3969
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 226,165 + GFF3966 0.40 -1.2 226,165 + GFF3966 0.40 -0.1 226,165 + GFF3966 0.40 -1.2 226,165 + GFF3966 0.40 -1.2 226,220 - GFF3966 0.44 -0.9 226,424 - GFF3966 0.60 +0.0 226,622 + GFF3966 0.75 -0.1 226,622 + GFF3966 0.75 +0.0 226,864 + -1.7 226,891 + -1.1 226,891 + -0.3 226,892 - +0.7 226,892 - -0.5 226,892 - +0.2 227,016 + GFF3967 0.12 +0.2 227,368 + GFF3967 0.83 +0.5 227,368 + GFF3967 0.83 -0.1 227,368 + GFF3967 0.83 -0.6 227,368 + GFF3967 0.83 +0.5 227,369 - GFF3967 0.83 +1.0 227,369 - GFF3967 0.83 +0.8 227,467 + +0.7 227,526 - +1.9 227,526 - -0.3 227,526 - +0.6 227,537 + -0.2 227,610 - GFF3968 0.24 +1.3 227,610 - GFF3968 0.24 -0.8 227,679 - GFF3968 0.43 +0.1 227,848 + +0.9 227,848 + +0.6 227,848 + +0.1 227,848 + +0.8 227,849 - -1.3 227,849 - -0.1 227,849 - +0.6 227,849 - -0.7 227,849 - -0.0 227,849 - +0.1 227,921 + -0.5 227,922 - +0.4 227,922 - +0.7 228,031 + +0.9 228,031 + +1.0 228,031 + -1.0 228,031 + +0.3 228,031 + +0.7 228,032 - +0.5 228,032 - -0.2 228,032 - +0.0 228,032 - -1.2 228,032 - +0.5 228,032 - +0.6 228,032 - +2.1 228,034 + +0.3 228,034 + -1.0 228,034 + -1.6 228,034 + -0.4 228,034 + +0.2 228,035 - -0.1 228,035 - +1.6 228,035 - -0.7 228,085 + -1.2 228,086 - -1.2 228,086 - -0.4 228,104 + +0.5 228,105 - -0.6 228,110 + +0.5 228,110 + +0.0 228,110 + +0.4 228,111 - +0.6 228,111 - -1.7 228,111 - +1.4 228,111 - +1.5 228,257 + -0.5 228,258 - +0.6 228,360 + GFF3969 0.14 +0.6 228,360 + GFF3969 0.14 +0.9 228,360 + GFF3969 0.14 -0.4 228,361 - GFF3969 0.14 +0.2 228,361 - GFF3969 0.14 -0.7 228,361 - GFF3969 0.14 +0.9 228,361 - GFF3969 0.14 -0.7 228,361 - GFF3969 0.14 +0.9 228,361 - GFF3969 0.14 -0.3 228,361 - GFF3969 0.14 -0.5
Or see this region's nucleotide sequence