Strain Fitness in Pseudomonas sp. DMC3 around GFF3826

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3824 and GFF3825 overlap by 4 nucleotidesGFF3825 and GFF3826 are separated by 128 nucleotidesGFF3826 and GFF3827 overlap by 4 nucleotides GFF3824 - hypothetical protein, at 71,635 to 72,288 GFF3824 GFF3825 - hypothetical protein, at 72,285 to 72,749 GFF3825 GFF3826 - Transcriptional repressor NrdR, at 72,878 to 73,342 GFF3826 GFF3827 - Riboflavin biosynthesis protein RibD, at 73,339 to 74,472 GFF3827 Position (kb) 72 73 74Strain fitness (log2 ratio) -2 -1 0 1at 71.892 kb on - strand, within GFF3824at 72.075 kb on - strand, within GFF3824at 72.117 kb on - strand, within GFF3824at 72.117 kb on - strand, within GFF3824at 72.117 kb on - strand, within GFF3824at 72.742 kb on - strandat 72.802 kb on - strandat 72.803 kb on + strandat 72.804 kb on - strandat 72.815 kb on + strandat 72.815 kb on + strandat 72.816 kb on - strandat 72.816 kb on - strandat 73.247 kb on + strand, within GFF3826at 73.247 kb on + strand, within GFF3826at 73.247 kb on + strand, within GFF3826at 73.268 kb on + strand, within GFF3826

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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71,892 - GFF3824 0.39 -2.0
72,075 - GFF3824 0.67 -1.7
72,117 - GFF3824 0.74 -0.1
72,117 - GFF3824 0.74 +0.3
72,117 - GFF3824 0.74 +0.7
72,742 - -0.2
72,802 - +0.5
72,803 + -0.2
72,804 - -1.7
72,815 + -1.3
72,815 + -0.6
72,816 - -2.2
72,816 - -1.0
73,247 + GFF3826 0.79 -0.5
73,247 + GFF3826 0.79 -0.3
73,247 + GFF3826 0.79 -1.4
73,268 + GFF3826 0.84 -0.7

Or see this region's nucleotide sequence