Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF35 and GFF36 overlap by 4 nucleotides GFF36 and GFF37 overlap by 4 nucleotides GFF37 and GFF38 are separated by 113 nucleotides GFF38 and GFF39 overlap by 1 nucleotides
GFF35 - Chaperone SurA, at 37,908 to 39,230
GFF35
GFF36 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 39,227 to 40,216
GFF36
GFF37 - Ribosomal RNA small subunit methyltransferase A, at 40,213 to 41,031
GFF37
GFF38 - Protein ApaG, at 41,145 to 41,525
GFF38
GFF39 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical, at 41,525 to 42,406
GFF39
Position (kb) 40
41
42 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 40.213 kb on - strand at 40.225 kb on + strand at 40.225 kb on + strand at 40.226 kb on - strand at 40.226 kb on - strand at 40.397 kb on + strand, within GFF37 at 40.397 kb on + strand, within GFF37 at 40.398 kb on - strand, within GFF37 at 40.398 kb on - strand, within GFF37 at 40.549 kb on + strand, within GFF37 at 40.549 kb on + strand, within GFF37 at 40.549 kb on + strand, within GFF37 at 40.549 kb on + strand, within GFF37 at 40.550 kb on - strand, within GFF37 at 40.799 kb on + strand, within GFF37 at 41.071 kb on + strand at 41.071 kb on + strand at 41.072 kb on - strand at 41.082 kb on - strand at 41.090 kb on - strand at 41.109 kb on + strand at 41.109 kb on + strand at 41.110 kb on - strand at 41.132 kb on - strand at 41.190 kb on + strand, within GFF38 at 41.190 kb on + strand, within GFF38 at 41.191 kb on - strand, within GFF38 at 41.238 kb on + strand, within GFF38 at 41.239 kb on - strand, within GFF38 at 41.251 kb on + strand, within GFF38 at 41.252 kb on - strand, within GFF38 at 41.252 kb on - strand, within GFF38 at 41.391 kb on + strand, within GFF38 at 41.391 kb on + strand, within GFF38 at 41.391 kb on + strand, within GFF38 at 41.391 kb on + strand, within GFF38 at 41.391 kb on + strand, within GFF38 at 41.391 kb on + strand, within GFF38 at 41.391 kb on + strand, within GFF38 at 41.391 kb on + strand, within GFF38 at 41.392 kb on - strand, within GFF38 at 41.392 kb on - strand, within GFF38 at 41.392 kb on - strand, within GFF38 at 41.392 kb on - strand, within GFF38 at 41.392 kb on - strand, within GFF38 at 41.392 kb on - strand, within GFF38 at 41.392 kb on - strand, within GFF38 at 41.393 kb on + strand, within GFF38 at 41.393 kb on + strand, within GFF38 at 41.394 kb on - strand, within GFF38 at 41.443 kb on - strand, within GFF38 at 41.443 kb on - strand, within GFF38 at 41.443 kb on - strand, within GFF38 at 41.534 kb on + strand at 41.534 kb on + strand at 41.535 kb on - strand at 41.535 kb on - strand at 41.681 kb on + strand, within GFF39 at 41.852 kb on + strand, within GFF39 at 41.853 kb on - strand, within GFF39 at 41.853 kb on - strand, within GFF39 at 41.853 kb on - strand, within GFF39 at 41.979 kb on - strand, within GFF39 at 41.993 kb on + strand, within GFF39 at 41.994 kb on - strand, within GFF39
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 40,213 - -2.4 40,225 + -2.3 40,225 + +0.1 40,226 - -1.6 40,226 - +1.0 40,397 + GFF37 0.22 +0.6 40,397 + GFF37 0.22 -0.6 40,398 - GFF37 0.23 -2.8 40,398 - GFF37 0.23 -1.2 40,549 + GFF37 0.41 -0.7 40,549 + GFF37 0.41 -3.0 40,549 + GFF37 0.41 +0.0 40,549 + GFF37 0.41 -0.4 40,550 - GFF37 0.41 +0.2 40,799 + GFF37 0.72 -0.9 41,071 + -0.3 41,071 + -0.1 41,072 - +1.2 41,082 - -0.7 41,090 - -0.4 41,109 + +0.3 41,109 + -0.1 41,110 - +0.0 41,132 - +1.2 41,190 + GFF38 0.12 -0.4 41,190 + GFF38 0.12 -0.4 41,191 - GFF38 0.12 -2.2 41,238 + GFF38 0.24 -0.3 41,239 - GFF38 0.25 -0.5 41,251 + GFF38 0.28 +0.3 41,252 - GFF38 0.28 -0.3 41,252 - GFF38 0.28 -0.9 41,391 + GFF38 0.65 -0.2 41,391 + GFF38 0.65 +1.4 41,391 + GFF38 0.65 -0.8 41,391 + GFF38 0.65 -0.7 41,391 + GFF38 0.65 +0.2 41,391 + GFF38 0.65 -0.5 41,391 + GFF38 0.65 +0.0 41,391 + GFF38 0.65 +0.6 41,392 - GFF38 0.65 +0.3 41,392 - GFF38 0.65 +0.4 41,392 - GFF38 0.65 -0.3 41,392 - GFF38 0.65 +0.3 41,392 - GFF38 0.65 -1.1 41,392 - GFF38 0.65 +0.6 41,392 - GFF38 0.65 +1.0 41,393 + GFF38 0.65 +0.3 41,393 + GFF38 0.65 -0.6 41,394 - GFF38 0.65 +1.4 41,443 - GFF38 0.78 +0.8 41,443 - GFF38 0.78 +0.2 41,443 - GFF38 0.78 +0.5 41,534 + -0.9 41,534 + +0.2 41,535 - -0.7 41,535 - +0.3 41,681 + GFF39 0.18 -1.7 41,852 + GFF39 0.37 +0.0 41,853 - GFF39 0.37 -0.2 41,853 - GFF39 0.37 -1.5 41,853 - GFF39 0.37 -0.7 41,979 - GFF39 0.51 -0.6 41,993 + GFF39 0.53 -1.2 41,994 - GFF39 0.53 -0.4
Or see this region's nucleotide sequence