Strain Fitness in Pseudomonas sp. DMC3 around GFF3547

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3546 and GFF3547 overlap by 1 nucleotidesGFF3547 and GFF3548 are separated by 93 nucleotidesGFF3548 and GFF3549 are separated by 18 nucleotides GFF3546 - hypothetical protein, at 131,096 to 131,737 GFF3546 GFF3547 - hypothetical protein, at 131,737 to 132,435 GFF3547 GFF3548 - Phosphate import ATP-binding protein PstB 3, at 132,529 to 133,347 GFF3548 GFF3549 - Phosphate transport system permease protein PstA, at 133,366 to 134,277 GFF3549 Position (kb) 131 132 133Strain fitness (log2 ratio) -2 -1 0 1 2at 130.793 kb on - strandat 131.054 kb on - strandat 131.416 kb on - strand, within GFF3546at 131.416 kb on - strand, within GFF3546at 131.437 kb on + strand, within GFF3546at 131.439 kb on + strand, within GFF3546at 131.439 kb on + strand, within GFF3546at 131.439 kb on + strand, within GFF3546at 131.439 kb on + strand, within GFF3546at 131.440 kb on - strand, within GFF3546at 131.440 kb on - strand, within GFF3546at 131.554 kb on + strand, within GFF3546at 131.554 kb on + strand, within GFF3546at 131.555 kb on - strand, within GFF3546at 131.623 kb on - strand, within GFF3546at 131.678 kb on - strandat 131.826 kb on - strand, within GFF3547at 131.852 kb on + strand, within GFF3547at 131.853 kb on - strand, within GFF3547at 131.853 kb on - strand, within GFF3547at 131.909 kb on + strand, within GFF3547at 131.910 kb on - strand, within GFF3547at 131.969 kb on + strand, within GFF3547at 131.970 kb on - strand, within GFF3547at 131.970 kb on - strand, within GFF3547at 131.970 kb on - strand, within GFF3547at 132.010 kb on - strand, within GFF3547at 132.041 kb on + strand, within GFF3547at 132.041 kb on + strand, within GFF3547at 132.041 kb on + strand, within GFF3547at 132.041 kb on + strand, within GFF3547at 132.041 kb on + strand, within GFF3547at 132.041 kb on + strand, within GFF3547at 132.041 kb on + strand, within GFF3547at 132.041 kb on + strand, within GFF3547at 132.042 kb on - strand, within GFF3547at 132.042 kb on - strand, within GFF3547at 132.042 kb on - strand, within GFF3547at 132.042 kb on - strand, within GFF3547at 132.042 kb on - strand, within GFF3547at 132.042 kb on - strand, within GFF3547at 132.042 kb on - strand, within GFF3547at 132.089 kb on + strand, within GFF3547at 132.098 kb on + strand, within GFF3547at 132.099 kb on - strand, within GFF3547at 132.099 kb on - strand, within GFF3547at 132.272 kb on + strand, within GFF3547at 132.272 kb on + strand, within GFF3547at 132.272 kb on + strand, within GFF3547at 132.272 kb on + strand, within GFF3547at 132.272 kb on + strand, within GFF3547at 132.272 kb on + strand, within GFF3547at 132.273 kb on - strand, within GFF3547at 132.273 kb on - strand, within GFF3547at 132.273 kb on - strand, within GFF3547at 132.291 kb on - strand, within GFF3547at 132.291 kb on - strand, within GFF3547at 132.459 kb on + strandat 132.459 kb on + strandat 132.551 kb on + strandat 132.551 kb on + strandat 132.552 kb on - strandat 132.552 kb on - strandat 132.617 kb on + strand, within GFF3548at 132.719 kb on + strand, within GFF3548at 132.719 kb on + strand, within GFF3548at 132.719 kb on + strand, within GFF3548at 132.719 kb on + strand, within GFF3548at 132.720 kb on - strand, within GFF3548at 132.962 kb on + strand, within GFF3548at 132.963 kb on - strand, within GFF3548at 132.963 kb on - strand, within GFF3548at 133.046 kb on + strand, within GFF3548at 133.047 kb on - strand, within GFF3548at 133.047 kb on - strand, within GFF3548at 133.170 kb on + strand, within GFF3548at 133.243 kb on + strand, within GFF3548at 133.244 kb on - strand, within GFF3548at 133.339 kb on + strandat 133.339 kb on + strandat 133.367 kb on + strandat 133.368 kb on - strandat 133.370 kb on + strandat 133.371 kb on - strandat 133.371 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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130,793 - +0.0
131,054 - +0.5
131,416 - GFF3546 0.50 +0.4
131,416 - GFF3546 0.50 +0.9
131,437 + GFF3546 0.53 -0.1
131,439 + GFF3546 0.53 +0.2
131,439 + GFF3546 0.53 +0.8
131,439 + GFF3546 0.53 -0.9
131,439 + GFF3546 0.53 -0.4
131,440 - GFF3546 0.54 -0.5
131,440 - GFF3546 0.54 +1.6
131,554 + GFF3546 0.71 +0.3
131,554 + GFF3546 0.71 -0.5
131,555 - GFF3546 0.71 -0.2
131,623 - GFF3546 0.82 -0.6
131,678 - -0.1
131,826 - GFF3547 0.13 +0.7
131,852 + GFF3547 0.16 +0.2
131,853 - GFF3547 0.17 +1.2
131,853 - GFF3547 0.17 +1.1
131,909 + GFF3547 0.25 +0.3
131,910 - GFF3547 0.25 -2.2
131,969 + GFF3547 0.33 -0.8
131,970 - GFF3547 0.33 +0.3
131,970 - GFF3547 0.33 +1.2
131,970 - GFF3547 0.33 -0.9
132,010 - GFF3547 0.39 -0.5
132,041 + GFF3547 0.43 +0.6
132,041 + GFF3547 0.43 +0.0
132,041 + GFF3547 0.43 -0.1
132,041 + GFF3547 0.43 -0.0
132,041 + GFF3547 0.43 -0.5
132,041 + GFF3547 0.43 -1.2
132,041 + GFF3547 0.43 +0.2
132,041 + GFF3547 0.43 +0.2
132,042 - GFF3547 0.44 -1.1
132,042 - GFF3547 0.44 +0.7
132,042 - GFF3547 0.44 -0.2
132,042 - GFF3547 0.44 +1.8
132,042 - GFF3547 0.44 +0.1
132,042 - GFF3547 0.44 -0.9
132,042 - GFF3547 0.44 +0.9
132,089 + GFF3547 0.50 +1.3
132,098 + GFF3547 0.52 +1.0
132,099 - GFF3547 0.52 +1.5
132,099 - GFF3547 0.52 +0.4
132,272 + GFF3547 0.77 -1.7
132,272 + GFF3547 0.77 -1.1
132,272 + GFF3547 0.77 -0.4
132,272 + GFF3547 0.77 +0.6
132,272 + GFF3547 0.77 +1.0
132,272 + GFF3547 0.77 -0.3
132,273 - GFF3547 0.77 +0.4
132,273 - GFF3547 0.77 -0.4
132,273 - GFF3547 0.77 +1.3
132,291 - GFF3547 0.79 +1.0
132,291 - GFF3547 0.79 +1.1
132,459 + -1.1
132,459 + +2.1
132,551 + -0.3
132,551 + +0.0
132,552 - -0.1
132,552 - -0.4
132,617 + GFF3548 0.11 +0.3
132,719 + GFF3548 0.23 +0.2
132,719 + GFF3548 0.23 -0.1
132,719 + GFF3548 0.23 +0.9
132,719 + GFF3548 0.23 -0.9
132,720 - GFF3548 0.23 +0.3
132,962 + GFF3548 0.53 +1.1
132,963 - GFF3548 0.53 -1.1
132,963 - GFF3548 0.53 +0.1
133,046 + GFF3548 0.63 -0.0
133,047 - GFF3548 0.63 +0.1
133,047 - GFF3548 0.63 -0.3
133,170 + GFF3548 0.78 +0.1
133,243 + GFF3548 0.87 -0.1
133,244 - GFF3548 0.87 +0.8
133,339 + +0.4
133,339 + +0.1
133,367 + +0.4
133,368 - +1.5
133,370 + +0.3
133,371 - +1.1
133,371 - -0.0

Or see this region's nucleotide sequence