Strain Fitness in Pseudomonas sp. DMC3 around GFF3147

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3146 and GFF3147 are separated by 290 nucleotidesGFF3147 and GFF3148 overlap by 35 nucleotidesGFF3148 and GFF3149 are separated by 331 nucleotides GFF3145 - Actin cross-linking toxin VgrG1, at 98,403 to 100,418 GFF3145 GFF3146 - hypothetical protein, at 100,408 to 101,121 GFF3146 GFF3147 - hypothetical protein, at 101,412 to 101,768 GFF3147 GFF3148 - hypothetical protein, at 101,734 to 102,276 GFF3148 GFF3149 - Ribosomal RNA large subunit methyltransferase J, at 102,608 to 103,447 GFF3149 Position (kb) 101 102Strain fitness (log2 ratio) -2 -1 0 1 2at 100.588 kb on + strand, within GFF3146at 100.588 kb on + strand, within GFF3146at 100.588 kb on + strand, within GFF3146at 100.589 kb on - strand, within GFF3146at 100.623 kb on - strand, within GFF3146at 100.820 kb on + strand, within GFF3146at 100.821 kb on - strand, within GFF3146at 100.821 kb on - strand, within GFF3146at 100.953 kb on - strand, within GFF3146at 100.953 kb on - strand, within GFF3146at 101.240 kb on + strandat 101.264 kb on + strandat 101.264 kb on + strandat 101.265 kb on - strandat 101.265 kb on - strandat 101.265 kb on - strandat 101.282 kb on + strandat 101.282 kb on + strandat 101.283 kb on - strandat 101.283 kb on - strandat 101.299 kb on - strandat 101.299 kb on - strandat 101.299 kb on - strandat 101.370 kb on + strandat 101.370 kb on + strandat 101.371 kb on - strandat 101.475 kb on + strand, within GFF3147at 101.806 kb on + strand, within GFF3148at 101.807 kb on - strand, within GFF3148at 101.815 kb on + strand, within GFF3148at 101.815 kb on + strand, within GFF3148at 101.816 kb on - strand, within GFF3148at 101.816 kb on - strand, within GFF3148at 101.816 kb on - strand, within GFF3148at 101.816 kb on - strand, within GFF3148at 101.816 kb on - strand, within GFF3148at 101.816 kb on - strand, within GFF3148at 101.876 kb on + strand, within GFF3148at 101.876 kb on + strand, within GFF3148at 101.876 kb on + strand, within GFF3148at 101.876 kb on + strand, within GFF3148at 101.876 kb on + strand, within GFF3148at 101.876 kb on + strand, within GFF3148at 101.876 kb on + strand, within GFF3148at 101.877 kb on - strand, within GFF3148at 101.877 kb on - strand, within GFF3148at 101.877 kb on - strand, within GFF3148at 101.877 kb on - strand, within GFF3148at 101.921 kb on + strand, within GFF3148at 101.922 kb on - strand, within GFF3148at 101.922 kb on - strand, within GFF3148at 101.922 kb on - strand, within GFF3148at 101.922 kb on - strand, within GFF3148at 101.991 kb on - strand, within GFF3148at 101.991 kb on - strand, within GFF3148at 102.001 kb on + strand, within GFF3148at 102.001 kb on + strand, within GFF3148at 102.005 kb on + strand, within GFF3148at 102.005 kb on + strand, within GFF3148at 102.005 kb on + strand, within GFF3148at 102.005 kb on + strand, within GFF3148at 102.005 kb on + strand, within GFF3148at 102.005 kb on + strand, within GFF3148at 102.005 kb on + strand, within GFF3148at 102.005 kb on + strand, within GFF3148at 102.006 kb on - strand, within GFF3148at 102.006 kb on - strand, within GFF3148at 102.006 kb on - strand, within GFF3148at 102.006 kb on - strand, within GFF3148at 102.006 kb on - strand, within GFF3148at 102.006 kb on - strand, within GFF3148at 102.006 kb on - strand, within GFF3148at 102.006 kb on - strand, within GFF3148at 102.006 kb on - strand, within GFF3148at 102.021 kb on + strand, within GFF3148at 102.021 kb on + strand, within GFF3148at 102.024 kb on - strand, within GFF3148at 102.024 kb on - strand, within GFF3148at 102.024 kb on - strand, within GFF3148at 102.095 kb on + strand, within GFF3148at 102.095 kb on + strand, within GFF3148at 102.176 kb on + strand, within GFF3148at 102.177 kb on - strand, within GFF3148at 102.184 kb on + strand, within GFF3148at 102.233 kb on + strandat 102.233 kb on + strandat 102.234 kb on - strandat 102.234 kb on - strandat 102.241 kb on + strandat 102.241 kb on + strandat 102.242 kb on - strandat 102.242 kb on - strandat 102.269 kb on + strandat 102.322 kb on + strandat 102.344 kb on - strandat 102.344 kb on - strandat 102.467 kb on - strandat 102.515 kb on + strandat 102.579 kb on + strandat 102.580 kb on - strandat 102.615 kb on - strandat 102.615 kb on - strandat 102.746 kb on + strand, within GFF3149

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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100,588 + GFF3146 0.25 +0.8
100,588 + GFF3146 0.25 -0.9
100,588 + GFF3146 0.25 +0.3
100,589 - GFF3146 0.25 -0.0
100,623 - GFF3146 0.30 -0.4
100,820 + GFF3146 0.58 +0.2
100,821 - GFF3146 0.58 +0.5
100,821 - GFF3146 0.58 -0.2
100,953 - GFF3146 0.76 -1.7
100,953 - GFF3146 0.76 -0.4
101,240 + +0.5
101,264 + +1.8
101,264 + -0.4
101,265 - +0.6
101,265 - +0.3
101,265 - -0.6
101,282 + -0.4
101,282 + +0.3
101,283 - +0.6
101,283 - -0.1
101,299 - -0.9
101,299 - -0.2
101,299 - -0.2
101,370 + -0.9
101,370 + -0.3
101,371 - -0.3
101,475 + GFF3147 0.18 -1.0
101,806 + GFF3148 0.13 -1.0
101,807 - GFF3148 0.13 +1.2
101,815 + GFF3148 0.15 +0.7
101,815 + GFF3148 0.15 -0.0
101,816 - GFF3148 0.15 +0.2
101,816 - GFF3148 0.15 -1.0
101,816 - GFF3148 0.15 -0.7
101,816 - GFF3148 0.15 -0.3
101,816 - GFF3148 0.15 -1.3
101,816 - GFF3148 0.15 +0.9
101,876 + GFF3148 0.26 +0.3
101,876 + GFF3148 0.26 -1.4
101,876 + GFF3148 0.26 +0.5
101,876 + GFF3148 0.26 -2.4
101,876 + GFF3148 0.26 -0.0
101,876 + GFF3148 0.26 -0.3
101,876 + GFF3148 0.26 +1.3
101,877 - GFF3148 0.26 +0.1
101,877 - GFF3148 0.26 -0.9
101,877 - GFF3148 0.26 -0.5
101,877 - GFF3148 0.26 -1.5
101,921 + GFF3148 0.34 -0.5
101,922 - GFF3148 0.35 +1.2
101,922 - GFF3148 0.35 -1.2
101,922 - GFF3148 0.35 +0.5
101,922 - GFF3148 0.35 -0.1
101,991 - GFF3148 0.47 -1.2
101,991 - GFF3148 0.47 +0.3
102,001 + GFF3148 0.49 -0.3
102,001 + GFF3148 0.49 -0.3
102,005 + GFF3148 0.50 -0.7
102,005 + GFF3148 0.50 +0.9
102,005 + GFF3148 0.50 +1.4
102,005 + GFF3148 0.50 -0.0
102,005 + GFF3148 0.50 -0.3
102,005 + GFF3148 0.50 -1.2
102,005 + GFF3148 0.50 -0.5
102,005 + GFF3148 0.50 +1.4
102,006 - GFF3148 0.50 -1.6
102,006 - GFF3148 0.50 +0.6
102,006 - GFF3148 0.50 +1.8
102,006 - GFF3148 0.50 +0.5
102,006 - GFF3148 0.50 -0.7
102,006 - GFF3148 0.50 +1.0
102,006 - GFF3148 0.50 -0.4
102,006 - GFF3148 0.50 -0.0
102,006 - GFF3148 0.50 -0.5
102,021 + GFF3148 0.53 -0.2
102,021 + GFF3148 0.53 -0.7
102,024 - GFF3148 0.53 +1.1
102,024 - GFF3148 0.53 -0.3
102,024 - GFF3148 0.53 -0.7
102,095 + GFF3148 0.66 +0.8
102,095 + GFF3148 0.66 -0.3
102,176 + GFF3148 0.81 -0.7
102,177 - GFF3148 0.82 -0.7
102,184 + GFF3148 0.83 +0.8
102,233 + +0.1
102,233 + -1.3
102,234 - -0.5
102,234 - -0.6
102,241 + -0.6
102,241 + -1.5
102,242 - -0.3
102,242 - -0.2
102,269 + +1.4
102,322 + +0.6
102,344 - -1.1
102,344 - +0.5
102,467 - -0.0
102,515 + -0.1
102,579 + -2.4
102,580 - -0.6
102,615 - -1.0
102,615 - -1.5
102,746 + GFF3149 0.16 -0.3

Or see this region's nucleotide sequence