Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3125 and GFF3126 overlap by 4 nucleotides GFF3126 and GFF3127 overlap by 4 nucleotides GFF3127 and GFF3128 are separated by 9 nucleotides GFF3128 and GFF3129 overlap by 23 nucleotides
GFF3125 - Surfactin synthase subunit 3, at 73,269 to 74,948
GFF3125
GFF3126 - hypothetical protein, at 74,945 to 75,490
GFF3126
GFF3127 - Acyl carrier protein, at 75,487 to 75,741
GFF3127
GFF3128 - Acyl carrier protein, at 75,751 to 76,026
GFF3128
GFF3129 - hypothetical protein, at 76,004 to 76,816
GFF3129
Position (kb) 75
76 Strain fitness (log2 ratio) -1
0
1
2 at 74.670 kb on + strand, within GFF3125 at 74.670 kb on + strand, within GFF3125 at 74.670 kb on + strand, within GFF3125 at 74.671 kb on - strand, within GFF3125 at 74.950 kb on + strand at 74.950 kb on + strand at 74.951 kb on - strand at 75.013 kb on - strand, within GFF3126 at 75.030 kb on + strand, within GFF3126 at 75.030 kb on + strand, within GFF3126 at 75.031 kb on - strand, within GFF3126 at 75.031 kb on - strand, within GFF3126 at 75.031 kb on - strand, within GFF3126 at 75.130 kb on + strand, within GFF3126 at 75.130 kb on + strand, within GFF3126 at 75.131 kb on - strand, within GFF3126 at 75.133 kb on - strand, within GFF3126 at 75.133 kb on - strand, within GFF3126 at 75.201 kb on + strand, within GFF3126 at 75.430 kb on - strand, within GFF3126 at 75.444 kb on + strand at 75.444 kb on + strand at 75.444 kb on + strand at 75.645 kb on - strand, within GFF3127 at 75.665 kb on - strand, within GFF3127 at 75.848 kb on + strand, within GFF3128 at 76.005 kb on + strand at 76.043 kb on - strand at 76.043 kb on - strand at 76.043 kb on - strand at 76.050 kb on + strand at 76.050 kb on + strand at 76.050 kb on + strand at 76.051 kb on - strand at 76.062 kb on + strand at 76.063 kb on - strand at 76.063 kb on - strand at 76.124 kb on + strand, within GFF3129 at 76.124 kb on + strand, within GFF3129 at 76.124 kb on + strand, within GFF3129 at 76.124 kb on + strand, within GFF3129 at 76.125 kb on - strand, within GFF3129 at 76.125 kb on - strand, within GFF3129 at 76.399 kb on - strand, within GFF3129 at 76.399 kb on - strand, within GFF3129 at 76.572 kb on + strand, within GFF3129 at 76.572 kb on + strand, within GFF3129 at 76.573 kb on - strand, within GFF3129 at 76.573 kb on - strand, within GFF3129 at 76.573 kb on - strand, within GFF3129 at 76.695 kb on - strand, within GFF3129
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 74,670 + GFF3125 0.83 -0.4 74,670 + GFF3125 0.83 +0.7 74,670 + GFF3125 0.83 +0.8 74,671 - GFF3125 0.83 -1.2 74,950 + +0.2 74,950 + -1.7 74,951 - +0.9 75,013 - GFF3126 0.12 -0.2 75,030 + GFF3126 0.16 -0.4 75,030 + GFF3126 0.16 +0.3 75,031 - GFF3126 0.16 -1.0 75,031 - GFF3126 0.16 +0.2 75,031 - GFF3126 0.16 +2.0 75,130 + GFF3126 0.34 -0.1 75,130 + GFF3126 0.34 -0.4 75,131 - GFF3126 0.34 +0.1 75,133 - GFF3126 0.34 +0.1 75,133 - GFF3126 0.34 +0.4 75,201 + GFF3126 0.47 +0.5 75,430 - GFF3126 0.89 -0.7 75,444 + -0.2 75,444 + -1.0 75,444 + -0.3 75,645 - GFF3127 0.62 +0.7 75,665 - GFF3127 0.70 +0.1 75,848 + GFF3128 0.35 +1.0 76,005 + +0.6 76,043 - +1.4 76,043 - -0.5 76,043 - -0.7 76,050 + -0.1 76,050 + -0.4 76,050 + +0.5 76,051 - +0.7 76,062 + -0.1 76,063 - -0.8 76,063 - +0.2 76,124 + GFF3129 0.15 -0.9 76,124 + GFF3129 0.15 -0.4 76,124 + GFF3129 0.15 +1.3 76,124 + GFF3129 0.15 -0.5 76,125 - GFF3129 0.15 -0.1 76,125 - GFF3129 0.15 +1.2 76,399 - GFF3129 0.49 -0.2 76,399 - GFF3129 0.49 -0.7 76,572 + GFF3129 0.70 -0.3 76,572 + GFF3129 0.70 -0.4 76,573 - GFF3129 0.70 +0.5 76,573 - GFF3129 0.70 -0.7 76,573 - GFF3129 0.70 +1.1 76,695 - GFF3129 0.85 +0.0
Or see this region's nucleotide sequence